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Two mosaic terminal inverted duplications arising post-zygotically: Evidence for possible formation of neo-telomeres. 合子后产生的两个嵌合末端反向复制:新端粒可能形成的证据。
Cell & chromosome Pub Date : 2008-03-10 DOI: 10.1186/1475-9268-7-1
Art Daniel, Luke St Heaps, Dianne Sylvester, Sara Diaz, Gregory Peters
{"title":"Two mosaic terminal inverted duplications arising post-zygotically: Evidence for possible formation of neo-telomeres.","authors":"Art Daniel,&nbsp;Luke St Heaps,&nbsp;Dianne Sylvester,&nbsp;Sara Diaz,&nbsp;Gregory Peters","doi":"10.1186/1475-9268-7-1","DOIUrl":"https://doi.org/10.1186/1475-9268-7-1","url":null,"abstract":"<p><strong>Objective: </strong>To elucidate the structure of terminal inverted duplications and to investigate potential mechanisms of formation in two cases where there was mosaicism with cells of apparently normal karyotype.</p><p><strong>Results: </strong>A karyotype [46,XY,inv dup(4)(p16.3p15.1)/46,XY] performed on blood lymphocytes from a patient referred for developmental delay (case 1) demonstrated a normal karyotype in 60% of cells with a terminal inverted duplication 4p in the remainder. In case 2, referred for multiple fetal anomalies on an ultrasound scan, 33% of amniocyte colonies were karyotypically normal, with a terminal inv dup 10p in the remainder [46,XX,inv dup(10)(p15.3p11)/46,XX]. Duplicated FISH signals for GATA3 and NEBL loci (in case 2), and for the Wolf-Hirschhorn locus (case 1) confirmed the inverted structure of both duplications. In the GTL banded normal cells from both cases, there was a cryptic deletion detected by FISH of one copy of the subtelomere 4p (case 1, probe GS-36P21), and subtelomere 10p (case 2, probe GS-306F7). At pter on both inv dup chromosomes there was no FISH signal present for the specific subtelomere probe. However, a positive pantelomeric probe signal was detected at 4 pter and 10 pter in both the cryptically-deleted chromosomes and the inv dup chromosomes in the respective cell lines of both cases.</p><p><strong>Conclusion: </strong>An inv dup structure was evident for both cases on GTL bands, and confirmed by the various FISH studies. The presence of telomere (TTAGGG repeat) sequences at pter on the inv dup chromosomes (where more proximal chromosome specific subtelomeric probes were negative) was indicated by the pantelomeric probe signals in both cases. We conclude the most likely mechanism of origin in both cases was by sub-telomeric breakage in the zygote at pter, and delayed repair/rearrangement until after one or more subsequent mitotic divisions. In these divisions, at least one breakage-fusion-bridge cycle occurred, to produce inverted duplications. It is proposed then that two differently \"repaired\" daughter cells proliferated in parallel. In one daughter cell line (with an overtly normal karyotype) there was deletion of the subtelomere and presumed repair through capping by a neo-telomere (i.e. \"healing\", as initially proposed by McClintock). This occurred in both cases presented. In the other daughter cell of each case, it is proposed that chromosome stabilization was achieved (after replication) by sister chromatid reunion to form a dicentric, which broke at a subsequent anaphase, to form an inverted duplication (with loss of the reciprocal product, and the other daughter cell line). One inv dup was repaired without an interstitial specific subtelomere (case 1) and one was repaired with a duplicated specific interstitial subtelomere (case 2). After repair TTAGGG repeats were detected by FISH at each respective new pter.</p>","PeriodicalId":84415,"journal":{"name":"Cell & chromosome","volume":"7 ","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2008-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1475-9268-7-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"27314810","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 16
Calyculin A, an enhancer of myosin, speeds up anaphase chromosome movement. Calyculin A 是肌球蛋白的增强剂,能加快无丝分裂期染色体的移动。
Cell & chromosome Pub Date : 2007-03-24 DOI: 10.1186/1475-9268-6-1
Lacramioara Fabian, Joanna Troscianczuk, Arthur Forer
{"title":"Calyculin A, an enhancer of myosin, speeds up anaphase chromosome movement.","authors":"Lacramioara Fabian, Joanna Troscianczuk, Arthur Forer","doi":"10.1186/1475-9268-6-1","DOIUrl":"10.1186/1475-9268-6-1","url":null,"abstract":"<p><p>Actin and myosin inhibitors often blocked anaphase movements in insect spermatocytes in previous experiments. Here we treat cells with an enhancer of myosin, Calyculin A, which inhibits myosin-light-chain phosphatase from dephosphorylating myosin; myosin thus is hyperactivated. Calyculin A causes anaphase crane-fly spermatocyte chromosomes to accelerate poleward; after they reach the poles they often move back toward the equator. When added during metaphase, chromosomes at anaphase move faster than normal. Calyculin A causes prometaphase chromosomes to move rapidly up and back along the spindle axis, and to rotate. Immunofluorescence staining with an antibody against phosphorylated myosin regulatory light chain (p-squash) indicated increased phosphorylation of cleavage furrow myosin compared to control cells, indicating that calyculin A indeed increased myosin phosphorylation. To test whether the Calyculin A effects are due to myosin phosphatase or to type 2 phosphatases, we treated cells with okadaic acid, which inhibits protein phosphatase 2A at concentrations similar to Calyculin A but requires much higher concentrations to inhibit myosin phosphatase. Okadaic acid had no effect on chromosome movement. Backward movements did not require myosin or actin since they were not affected by 2,3-butanedione monoxime or LatruculinB. Calyculin A affects the distribution and organization of spindle microtubules, spindle actin, cortical actin and putative spindle matrix proteins skeletor and titin, as visualized using immunofluorescence. We discuss how accelerated and backwards movements might arise.</p>","PeriodicalId":84415,"journal":{"name":"Cell & chromosome","volume":"6 ","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2007-03-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1847834/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"26222849","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Trend towards varying combinatorial centromere association in morphologically identical clusters in Purkinje neurons. 浦肯野神经元形态相同簇中组合着丝粒关联变化趋势。
Cell & chromosome Pub Date : 2006-12-07 DOI: 10.1186/1475-9268-5-1
Kunjumon I Vadakkan, Baoxiang Li, Umberto De Boni
{"title":"Trend towards varying combinatorial centromere association in morphologically identical clusters in Purkinje neurons.","authors":"Kunjumon I Vadakkan,&nbsp;Baoxiang Li,&nbsp;Umberto De Boni","doi":"10.1186/1475-9268-5-1","DOIUrl":"https://doi.org/10.1186/1475-9268-5-1","url":null,"abstract":"<p><p>Neurons with similar morphology and neurotransmitter content located at a specific brain region may be part of the same or functionally separate networks. To address the question whether morphologically similar neurons have similar structural architecture at the chromosomal level, we studied Purkinje neurons in the cerebellum. Previous studies have shown that in Purkinje neurons centromeres of several chromosomes form clusters and that the number and size of these clusters remain stable in the adult brain. We examined whether the same set of centromeres form clusters in all the Purkinje neurons. Fluorescent in situ hybridization (FISH) with chromosome-specific para-centromeric probes provided an indirect evidence for a trend towards varying contributions from different chromosomes forming the centromeric clusters in adjacent Purkinje neurons. The results of the study indicate that the individual Purkinje neurons are likely unique in inter-chromosomal spatial associations.</p>","PeriodicalId":84415,"journal":{"name":"Cell & chromosome","volume":"5 1","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2006-12-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1475-9268-5-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"26432054","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Non-obstructive azoospermia and maturation arrest with complex translocation 46,XY t(9;13;14)(p22;q21.2;p13) is consistent with the Luciani-Guo hypothesis of latent aberrant autosomal regions and infertility. 非梗阻性无精子症和成熟阻滞伴复杂易位46,XY t(9;13;14)(p22;q21.2;p13)与Luciani-Guo潜伏异常常染色体区域和不孕症假说一致。
Cell & chromosome Pub Date : 2005-09-14 DOI: 10.1186/1475-9268-4-2
Eric Scott Sills, Joseph Jinsuk Kim, Michael A Witt, Gianpiero D Palermo
{"title":"Non-obstructive azoospermia and maturation arrest with complex translocation 46,XY t(9;13;14)(p22;q21.2;p13) is consistent with the Luciani-Guo hypothesis of latent aberrant autosomal regions and infertility.","authors":"Eric Scott Sills,&nbsp;Joseph Jinsuk Kim,&nbsp;Michael A Witt,&nbsp;Gianpiero D Palermo","doi":"10.1186/1475-9268-4-2","DOIUrl":"https://doi.org/10.1186/1475-9268-4-2","url":null,"abstract":"<p><strong>Objective: </strong>To describe clinical and histological features observed in the setting of an unusual complex translocation involving three autosomes (9, 13, and 14) identified in an otherwise healthy male referred for infertility consultation.</p><p><strong>Materials and methods: </strong>The patient was age 30 and no family history was available (adopted). Total azoospermia was confirmed on multiple semen analyses. Peripheral karyotype showed a 46,XY t(9;13;14)(p22:q21.2;p13) genotype; no Y-chromosome microdeletions were identified. Cystic fibrosis screening was negative. Bilateral testis biopsy revealed uniform maturation arrest and peritubular fibrosis.</p><p><strong>Results: </strong>Formal genetic counseling was obtained and the extant literature reviewed with the couple. Given the low probability of obtaining sperm on testicular biopsy, as well as the high risk of any retrieved sperm having an unbalanced genetic rearrangement, the couple elected to proceed with fertility treatment using anonymous donor sperm for insemination.</p><p><strong>Conclusion: </strong>Although genes mapped to the Y-chromosome have been established as critical to normal testicular development and spermatogenesis, certain autosomal genes are now also recognized as important in these processes. Here we present clinical evidence to support the Luciani-Guo hypothesis (first advanced in 1984 and refined in 2002), which predicts severe spermatogenic impairment with aberrations involving chromosomes 9, 13, and/or 14, independent of Y-chromosome status. Additional study including fluorescent in situ hybridization and molecular analysis of specific chromosomal regions is needed to characterize more fully the contribution(s) of these autosomes to male testicular development and spermatogenesis.</p>","PeriodicalId":84415,"journal":{"name":"Cell & chromosome","volume":"4 ","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2005-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1475-9268-4-2","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25008877","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 20
Chromosomal changes in uroepithelial carcinomas. 尿上皮癌的染色体改变。
Cell & chromosome Pub Date : 2005-08-07 DOI: 10.1186/1475-9268-4-1
Imad Fadl-Elmula
{"title":"Chromosomal changes in uroepithelial carcinomas.","authors":"Imad Fadl-Elmula","doi":"10.1186/1475-9268-4-1","DOIUrl":"https://doi.org/10.1186/1475-9268-4-1","url":null,"abstract":"<p><p>This article reviews and summarizes chromosomal changes responsible for the initiation and progression of uroepithelial carcinomas. Characterization of these alterations may lead to a better understanding of the genetic mechanisms and open the door for molecular markers that can be used for better diagnosis and prognosis of the disease. Such information might even help in designing new therapeutic strategies geared towards prevention of tumor recurrences and more aggressive approach in progression-prone cases. The revision of 205 cases of uroepithelial carcinomas reported with abnormal karyotypes showed karyotypic profile characterized by nonrandom chromosomal aberrations varying from one or few changes in low-grade and early stage tumors to massively rearranged karyotypes in muscle invasive ones. In general, the karyotypic profile was dominated by losses of chromosomal material seen as loss of entire chromosome and/or deletions of genetic materials. Rearrangements of chromosome 9 resulting in loss of material from 9p, 9q, or of the entire chromosome were the most frequent cytogenetic alterations, seen in 45% of the cases. Whereas loss of material from chromosome arms 1p, 8p, and 11p, and gains of chromosome 7, and chromosome arm 1q, and 8q seem to be an early, but secondary, changes appearing in superficial and well differentiated tumors, the formation of an isochromosome for 5p and loss of material from 17p are associated with more aggressive tumor phenotypes. Upper urinary tract TCCs have identical karyotypic profile to that of bladder TCCs, indicating the same pathogenetic mechanisms are at work in both locales. Intratumor cytogenetic heterogeneity was not seen except in a few post-radiation uroepithelial carcinomas in which distinct karyotypic and clonal pattern were characterized by massive intratumor heterogeneity (cytogenetic polyclonality) with near-diploid clones and simple balanced and/or unbalanced translocations. In the vast majority of cases strong correlation between the tumors grade/stage and karyotypic complexity was seen, indicating that progressive accumulation of acquired genetic alterations is the driving force behind multistep bladder TCC carcinogenesis. Although most of these cytogenetic alterations have been identified for many years, the molecular consequences and relevant cancer genes of these alterations have not yet been identified. However, loss of TSG(s) from chromosome 9 seems to be the primary and important event(s) in uroepithelial carcinogenesis.</p>","PeriodicalId":84415,"journal":{"name":"Cell & chromosome","volume":"4 ","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2005-08-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1475-9268-4-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25232571","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 63
Chromosome loops arising from intrachromosomal tethering of telomeres occur at high frequency in G1 (non-cycling) mitotic cells: Implications for telomere capture. 染色体环由染色体内端粒栓系引起,在G1(非循环)有丝分裂细胞中发生频率很高:对端粒捕获的影响。
Cell & chromosome Pub Date : 2004-09-29 DOI: 10.1186/1475-9268-3-3
Art Daniel, Luke St Heaps
{"title":"Chromosome loops arising from intrachromosomal tethering of telomeres occur at high frequency in G1 (non-cycling) mitotic cells: Implications for telomere capture.","authors":"Art Daniel,&nbsp;Luke St Heaps","doi":"10.1186/1475-9268-3-3","DOIUrl":"https://doi.org/10.1186/1475-9268-3-3","url":null,"abstract":"<p><p>BACKGROUND: To investigate potential mechanisms for telomere capture the spatial arrangement of telomeres and chromosomes was examined in G1 (non-cycling) mitotic cells with diploid or triploid genomes. This was examined firstly by directly labelling the respective short arm (p) and long arm subtelomeres (q) with different fluorophores and probing cell preparations using a number of subtelomere probe pairs, those for chromosomes 1, 3, 4, 5, 6, 7, 9, 10, 12, 17, 18, and 20. In addition some interstitial probes (CEN15, PML and SNRPN on chromosome 15) and whole chromosome paint probes (e.g. WCP12) were jointly hybridised to investigate the co-localization of interphase chromosome domains and tethered subtelomeres. Cells were prepared by omitting exposure to colcemid and hypotonic treatments. RESULTS: In these cells a specific interphase chromosome topology was detected. It was shown that the p and q telomeres of the each chromosome associate frequently (80% pairing) in an intrachromosomal manner, i.e. looped chromosomes with homologues usually widely spaced within the nucleus. This p-q tethering of the telomeres from the one chromosome was observed with large (chromosomes 3, 4, 5), medium sized (6, 7, 9, 10, 12), or small chromosomes (17, 18, 20). When triploid nuclei were probed there were three tetherings of p-q subtelomere signals representing the three widely separated looped chromosome homologues. The separate subtelomere pairings were shown to coincide with separate chromosome domains as defined by the WCP and interstitial probes. The 20% of apparently unpaired subtelomeric signals in diploid nuclei were partially documented to be pairings with the telomeres of other chromosomes. CONCLUSIONS: A topology for telomeres was detected where looped chromosome homologues were present at G1 interphase. These homologues were spatially arranged with respect to one-another independently of other chromosomes, i.e. there was no chromosome order on different sides of the cell nuclei and no segregation into haploid sets was detected. The normal function of this high frequency of intrachromosomal loops is unknown but a potential role is likely in the genesis of telomere captures whether of the intrachromosomal type or between non-homologues. This intrachromosomal tethering of telomeres cannot be related to telomeric or subtelomeric sequences since these are shared in varying degree with other chromosomes. In our view, these intrachromosomal telomeric tetherings with the resulting looped chromosomes arranged in a regular topology must be important to normal cell function since non-cycling cells in G1 are far from quiescent, are in fact metabolically active, and these cells represent the majority status since only a small proportion of cells are normally dividing.</p>","PeriodicalId":84415,"journal":{"name":"Cell & chromosome","volume":"3 1","pages":"3"},"PeriodicalIF":0.0,"publicationDate":"2004-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1475-9268-3-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"24762385","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 11
DNA and the chromosome - varied targets for chemotherapy. DNA和染色体——化疗的不同靶点。
Cell & chromosome Pub Date : 2004-05-24 DOI: 10.1186/1475-9268-3-2
Stephanie M Nelson, Lynnette R Ferguson, William A Denny
{"title":"DNA and the chromosome - varied targets for chemotherapy.","authors":"Stephanie M Nelson,&nbsp;Lynnette R Ferguson,&nbsp;William A Denny","doi":"10.1186/1475-9268-3-2","DOIUrl":"https://doi.org/10.1186/1475-9268-3-2","url":null,"abstract":"<p><p>The nucleus of the cell serves to maintain, regulate, and replicate the critical genetic information encoded by the genome. Genomic DNA is highly associated with proteins that enable simple nuclear structures such as nucleosomes to form higher-order organisation such as chromatin fibres. The temporal association of regulatory proteins with DNA creates a dynamic environment capable of quickly responding to cellular requirements and distress. The response is often mediated through alterations in the chromatin structure, resulting in changed accessibility of specific DNA sequences that are then recognized by specific proteins. Anti-cancer drugs that target cellular DNA have been used clinically for over four decades, but it is only recently that nuclease specific drugs have been developed to not only target the DNA but also other components of the nuclear structure and its regulation. In this review, we discuss some of the new drugs aimed at primary DNA sequences, DNA secondary structures, and associated proteins, keeping in mind that these agents are not only important from a clinical perspective but also as tools for understanding the nuclear environment in normal and cancer cells.</p>","PeriodicalId":84415,"journal":{"name":"Cell & chromosome","volume":"3 1","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2004-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1475-9268-3-2","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"24530055","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 49
Imaging genome abnormalities in cancer research. 癌症研究中的基因组异常成像。
Cell & chromosome Pub Date : 2004-01-13 DOI: 10.1186/1475-9268-3-1
Henry HQ Heng, Joshua B Stevens, Guo Liu, Steven W Bremer, Christine J Ye
{"title":"Imaging genome abnormalities in cancer research.","authors":"Henry HQ Heng,&nbsp;Joshua B Stevens,&nbsp;Guo Liu,&nbsp;Steven W Bremer,&nbsp;Christine J Ye","doi":"10.1186/1475-9268-3-1","DOIUrl":"https://doi.org/10.1186/1475-9268-3-1","url":null,"abstract":"<p><p>Increasing attention is focusing on chromosomal and genome structure in cancer research due to the fact that genomic instability plays a principal role in cancer initiation, progression and response to chemotherapeutic agents. The integrity of the genome (including structural, behavioral and functional aspects) of normal and cancer cells can be monitored with direct visualization by using a variety of cutting edge molecular cytogenetic technologies that are now available in the field of cancer research. Examples are presented in this review by grouping these methodologies into four categories visualizing different yet closely related major levels of genome structures. An integrated discussion is also presented on several ongoing projects involving the illustration of mitotic and meiotic chromatin loops; the identification of defective mitotic figures (DMF), a new type of chromosomal aberration capable of monitoring condensation defects in cancer; the establishment of a method that uses Non-Clonal Chromosomal Aberrations (NCCAs) as an index to monitor genomic instability; and the characterization of apoptosis related chromosomal fragmentations caused by drug treatments.</p>","PeriodicalId":84415,"journal":{"name":"Cell & chromosome","volume":"3 1","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2004-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1475-9268-3-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"24164030","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 67
Microarray analysis of gene expression during the cell cycle. 细胞周期中基因表达的微阵列分析。
Cell & chromosome Pub Date : 2003-09-19 DOI: 10.1186/1475-9268-2-1
Stephen Cooper, Kerby Shedden
{"title":"Microarray analysis of gene expression during the cell cycle.","authors":"Stephen Cooper,&nbsp;Kerby Shedden","doi":"10.1186/1475-9268-2-1","DOIUrl":"https://doi.org/10.1186/1475-9268-2-1","url":null,"abstract":"<p><p>Microarrays have been applied to the determination of genome-wide expression patterns during the cell cycle of a number of different cells. Both eukaryotic and prokaryotic cells have been studied using whole-culture and selective synchronization methods. The published microarray data on yeast, mammalian, and bacterial cells have been uniformly interpreted as indicating that a large number of genes are expressed in a cell-cycle-dependent manner. These conclusions are reconsidered using explicit criteria for synchronization and precise criteria for identifying gene expression patterns during the cell cycle. The conclusions regarding cell-cycle-dependent gene expression based on microarray analysis are weakened by arguably problematic choices for synchronization methodology (e.g., whole-culture methods that do not synchronize cells) and questionable statistical rigor for identifying cell-cycle-dependent gene expression. Because of the uncertainties in synchrony methodology, as well as uncertainties in microarray analysis, one should be somewhat skeptical of claims that there are a large number of genes expressed in a cell-cycle-dependent manner.</p>","PeriodicalId":84415,"journal":{"name":"Cell & chromosome","volume":"2 1","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2003-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1475-9268-2-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"24043966","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 65
MG-132, an inhibitor of proteasomes and calpains, induced inhibition of oocyte maturation and aneuploidy in mouse oocytes. MG-132是一种蛋白酶体和钙蛋白酶的抑制剂,可诱导小鼠卵母细胞成熟和非整倍体的抑制。
Cell & chromosome Pub Date : 2002-10-08 DOI: 10.1186/1475-9268-1-2
John B Mailhes, Colette Hilliard, Mary Lowery, Steve N London
{"title":"MG-132, an inhibitor of proteasomes and calpains, induced inhibition of oocyte maturation and aneuploidy in mouse oocytes.","authors":"John B Mailhes,&nbsp;Colette Hilliard,&nbsp;Mary Lowery,&nbsp;Steve N London","doi":"10.1186/1475-9268-1-2","DOIUrl":"https://doi.org/10.1186/1475-9268-1-2","url":null,"abstract":"<p><p>BACKGROUND: Although chromosome missegregation during oocyte maturation (OM) is a significant contributor to human morbidity and mortality, very little is known about the causes and mechanisms of aneuploidy. Several investigators have proposed that temporal perturbations during OM predispose oocytes to aberrant chromosome segregation. One approach for testing this proposal is to temporarily inhibit the activity of protein proteolysis during OM. We used the reversible proteasome inhibitor MG-132 to transiently perturb the temporal sequence of events during OM and subsequently analyzed mouse metaphase II (MII) for cytogenetic abnormalities. The transient inhibition of proteasome activity by MG-132 resulted in elevated levels of oocytes containing extra chromatids and chromosomes. RESULTS: The transient inhibition of proteasome-mediated proteolysis during OM by MG-132 resulted in dose-response delays during OM and elevated levels of aneuploid MII oocytes. Oocytes exposed in vitro to MG-132 exhibited greater delays during metaphase I (MI) as demonstrated by significantly (p < 0.01) higher levels of MI arrested oocytes and lower frequencies of premature sister chromatid separation in MII oocytes. Furthermore, the proportions of MII oocytes containing single chromatids and extra chromosomes significantly (p < 0.01) increased with MG-132 dosage. CONCLUSIONS: These data suggest that the MG-132-induced transient delay of proteasomal activity during mouse OM in vitro predisposed oocytes to abnormal chromosome segregation. Although these findings support a relationship between disturbed proteasomal activity and chromosome segregation, considerable additional data are needed to further investigate the roles of proteasome-mediated proteolysis and other potential molecular mechanisms on chromosome segregation during OM.</p>","PeriodicalId":84415,"journal":{"name":"Cell & chromosome","volume":"1 1","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2002-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/1475-9268-1-2","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"22117150","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 39
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