Annual review of plant biology最新文献_第9页

Evolution and Functions of Plant U-Box Proteins: From Protein Quality Control to Signaling. 植物U-Box蛋白质的进化和功能：从蛋白质质量控制到信号传导。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2022-02-28 DOI: 10.1146/annurev-arplant-102720-012310

Jana Trenner, Jacqueline Monaghan, Bushra Saeed, M. Quint, N. Shabek, M. Trujillo

{"title":"Evolution and Functions of Plant U-Box Proteins: From Protein Quality Control to Signaling.","authors":"Jana Trenner, Jacqueline Monaghan, Bushra Saeed, M. Quint, N. Shabek, M. Trujillo","doi":"10.1146/annurev-arplant-102720-012310","DOIUrl":"https://doi.org/10.1146/annurev-arplant-102720-012310","url":null,"abstract":"Posttranslational modifications add complexity and diversity to cellular proteomes. One of the most prevalent modifications across eukaryotes is ubiquitination, which is orchestrated by E3 ubiquitin ligases. U-box-containing E3 ligases have massively expanded in the plant kingdom and have diversified into plant U-box proteins (PUBs). PUBs likely originated from two or three ancestral forms, fusing with diverse functional subdomains that resulted in neofunctionalization. Their emergence and diversification may reflect adaptations to stress during plant evolution, reflecting changes in the needs of plant proteomes to maintain cellular homeostasis. Through their close association with protein kinases, they are physically linked to cell signaling hubs and activate feedback loops by dynamically pairing with E2-ubiquitin-conjugating enzymes to generate distinct ubiquitin polymers that themselves act as signals. Here, we complement current knowledge with comparative genomics to gain a deeper understanding of PUB function, focusing on their evolution and structural adaptations of key U-box residues, as well as their various roles in plant cells. Expected final online publication date for the Annual Review of Plant Biology, Volume 73 is May 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":" ","pages":""},"PeriodicalIF":23.9,"publicationDate":"2022-02-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47851593","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 13

The Costs and Benefits of Plant-Arbuscular Mycorrhizal Fungal Interactions. 植物丛枝菌根真菌相互作用的成本和效益。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2022-02-25 DOI: 10.1146/annurev-arplant-102820-124504

Alison E. Bennett, K. Groten

引用次数: 39

The Land-Sea Connection: Insights Into the Plant Lineage from a Green Algal Perspective. 陆海联系:从绿藻的角度看植物谱系。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2022-02-08 DOI: 10.1146/annurev-arplant-071921-100530

Charles Bachy, Fabian Wittmers, Jan Muschiol, Maria Hamilton, B. Henrissat, A. Worden

{"title":"The Land-Sea Connection: Insights Into the Plant Lineage from a Green Algal Perspective.","authors":"Charles Bachy, Fabian Wittmers, Jan Muschiol, Maria Hamilton, B. Henrissat, A. Worden","doi":"10.1146/annurev-arplant-071921-100530","DOIUrl":"https://doi.org/10.1146/annurev-arplant-071921-100530","url":null,"abstract":"The colonization of land by plants generated opportunities for the rise of new heterotrophic life forms, including humankind. A unique event underpinned this massive change to earth ecosystems-the advent of eukaryotic green algae. Today, an abundant marine green algal group, the prasinophytes, alongside prasinodermophytes and nonmarine chlorophyte algae are facilitating insights into plant developments. Genome-level data allow identification of conserved proteins and protein families with extensive modifications, losses, or gains and expansion patterns that connect to niche specialization and diversification. Here, we contextualize attributes according to Viridiplantae evolutionary relationships, starting with orthologous protein families, and then focusing on key elements with marked differentiation, resulting in patchy distributions across green algae and plants. We place attention on peptidoglycan biosynthesis, important for plastid division and walls; phytochrome photosensors that are master regulators in plants; and carbohydrate-active enzymes, essential to all manner of carbohydrate biotransformations. Together with advances in algal model systems, these areas are ripe for discovering molecular roles and innovations within and across plant and algal lineages. Expected final online publication date for the Annual Review of Plant Biology, Volume 73 is May 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"1 1","pages":""},"PeriodicalIF":23.9,"publicationDate":"2022-02-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"63954358","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 11

Meeting in the Middle: Lessons and Opportunities from Studying C3-C4 Intermediates. 中级课程:学习C3-C4中级课程的经验与机遇。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2022-02-01 DOI: 10.1146/annurev-arplant-102720-114201

Mae Antonette Mercado, Anthony J. Studer

{"title":"Meeting in the Middle: Lessons and Opportunities from Studying C3-C4 Intermediates.","authors":"Mae Antonette Mercado, Anthony J. Studer","doi":"10.1146/annurev-arplant-102720-114201","DOIUrl":"https://doi.org/10.1146/annurev-arplant-102720-114201","url":null,"abstract":"The discovery of C3-C4 intermediate species nearly 50 years ago opened up a new avenue for studying the evolution of photosynthetic pathways. Intermediate species exhibit anatomical, biochemical, and physiological traits that range from C3 to C4. A key feature of C3-C4 intermediates that utilize C2 photosynthesis is the improvement in photosynthetic efficiency compared with C3 species. Although the recruitment of some core enzymes is shared across lineages, there is significant variability in gene expression patterns, consistent with models that suggest numerous evolutionary paths from C3 to C4 photosynthesis. Despite the many evolutionary trajectories, the recruitment of glycine decarboxylase for C2 photosynthesis is likely required. As technologies enable high-throughput genotyping and phenotyping, the discovery of new C3-C4 intermediates species will enrich comparisons between evolutionary lineages. The investigation of C3-C4 intermediate species will enhance our understanding of photosynthetic mechanisms and evolutionary processes and will potentially aid in crop improvement. Expected final online publication date for the Annual Review of Plant Biology, Volume 73 is May 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":" ","pages":""},"PeriodicalIF":23.9,"publicationDate":"2022-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45154414","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 3

Climate Change Risks to Global Forest Health: Emergence of Unexpected Events of Elevated Tree Mortality Worldwide. 气候变化对全球森林健康的风险:全球树木死亡率上升的意外事件的出现。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2022-02-01 DOI: 10.1146/annurev-arplant-102820-012804

H. Hartmann, Ana Bastos, Adrian J. Das, Adriane Esquivel‐Muelbert, W. M. Hammond, J. Martínez‐Vilalta, N. McDowell, J. Powers, T. Pugh, K. Ruthrof, C. Allen

{"title":"Climate Change Risks to Global Forest Health: Emergence of Unexpected Events of Elevated Tree Mortality Worldwide.","authors":"H. Hartmann, Ana Bastos, Adrian J. Das, Adriane Esquivel‐Muelbert, W. M. Hammond, J. Martínez‐Vilalta, N. McDowell, J. Powers, T. Pugh, K. Ruthrof, C. Allen","doi":"10.1146/annurev-arplant-102820-012804","DOIUrl":"https://doi.org/10.1146/annurev-arplant-102820-012804","url":null,"abstract":"Recent observations of elevated tree mortality following climate extremes, like heat and drought, raise concerns about climate change risks to global forest health. We currently lack both sufficient data and understanding to identify whether these observations represent a global trend toward increasing tree mortality. Here, we document events of sudden and unexpected elevated tree mortality following heat and drought events in ecosystems that previously were considered tolerant or not at risk of exposure. These events underscore the fact that climate change may affect forests with unexpected force in the future. We use the events as examples to highlight current difficulties and challenges for realistically predicting such tree mortality events and the uncertainties about future forest condition. Advances in remote sensing technology and greater availably of high-resolution data, from both field assessments and from satellites, are needed to improve both understanding and prediction of forest responses to future climate change. Expected final online publication date for the Annual Review of Plant Biology, Volume 73 is May 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":" ","pages":""},"PeriodicalIF":23.9,"publicationDate":"2022-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44184577","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 76

H+-ATPases in Plant Growth and Stress Responses. H+- atp酶在植物生长和胁迫反应中的作用。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2022-02-01 DOI: 10.1146/annurev-arplant-102820-114551

Ying Li, Houqing Zeng, Feiyun Xu, F. Yan, Weifeng Xu

{"title":"H+-ATPases in Plant Growth and Stress Responses.","authors":"Ying Li, Houqing Zeng, Feiyun Xu, F. Yan, Weifeng Xu","doi":"10.1146/annurev-arplant-102820-114551","DOIUrl":"https://doi.org/10.1146/annurev-arplant-102820-114551","url":null,"abstract":"H+-ATPases, including the phosphorylated intermediate-type (P-type) and vacuolar-type (V-type) H+-ATPases, are important ATP-driven proton pumps that generate membrane potential and provide proton motive force for secondary active transport. P- and V-type H+-ATPases have distinct structures and subcellular localizations and play various roles in growth and stress responses. A P-type H+-ATPase is mainly regulated at the posttranslational level by phosphorylation and dephosphorylation of residues in its autoinhibitory C terminus. The expression and activity of both P- and V-type H+-ATPases are highly regulated by hormones and environmental cues. In this review, we summarize the recent advances in understanding of the evolution, regulation, and physiological roles of P- and V-type H+-ATPases, which coordinate and are involved in plant growth and stress adaptation. Understanding the different roles and the regulatory mechanisms of P- and V-type H+-ATPases provides a new perspective for improving plant growth and stress tolerance by modulating the activity of H+-ATPases, which will mitigate the increasing environmental stress conditions with ongoing global climate change. Expected final online publication date for the Annual Review of Plant Biology, Volume 73 is May 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":" ","pages":""},"PeriodicalIF":23.9,"publicationDate":"2022-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48008005","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 23

Time-Based Systems Biology Approaches to Capture and Model Dynamic Gene Regulatory Networks. 基于时间的系统生物学方法捕捉和模拟动态基因调控网络。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2021-06-17 Epub Date: 2021-03-05 DOI: 10.1146/annurev-arplant-081320-090914

Jose M Alvarez, Matthew D Brooks, Joseph Swift, Gloria M Coruzzi

引用次数: 12

Biological Phase Separation and Biomolecular Condensates in Plants. 植物中的生物相分离和生物分子凝结物。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2021-06-17 Epub Date: 2021-03-08 DOI: 10.1146/annurev-arplant-081720-015238

Ryan J Emenecker, Alex S Holehouse, Lucia C Strader

{"title":"Biological Phase Separation and Biomolecular Condensates in Plants.","authors":"Ryan J Emenecker, Alex S Holehouse, Lucia C Strader","doi":"10.1146/annurev-arplant-081720-015238","DOIUrl":"10.1146/annurev-arplant-081720-015238","url":null,"abstract":"A surge in research focused on understanding the physical principles governing the formation, properties, and function of membraneless compartments has occurred over the past decade. Compartments such as the nucleolus, stress granules, and nuclear speckles have been designated as biomolecular condensates to describe their shared property of spatially concentrating biomolecules. Although this research has historically been carried out in animal and fungal systems, recent work has begun to explore whether these same principles are relevant in plants. Effectively understanding and studying biomolecular condensates require interdisciplinary expertise that spans cell biology, biochemistry, and condensed matter physics and biophysics. As such, some involved concepts may be unfamiliar to any given individual. This review focuses on introducing concepts essential to the study of biomolecular condensates and phase separation for biologists seeking to carry out research in this area and further examines aspects of biomolecular condensates that are relevant to plant systems.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"72 ","pages":"17-46"},"PeriodicalIF":23.9,"publicationDate":"2021-06-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8221409/pdf/nihms-1713550.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25448058","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Phytochrome Signaling Networks. 植物色素信号网络。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2021-06-17 Epub Date: 2021-03-23 DOI: 10.1146/annurev-arplant-080620-024221

Mei-Chun Cheng, Praveen Kumar Kathare, Inyup Paik, Enamul Huq

{"title":"Phytochrome Signaling Networks.","authors":"Mei-Chun Cheng, Praveen Kumar Kathare, Inyup Paik, Enamul Huq","doi":"10.1146/annurev-arplant-080620-024221","DOIUrl":"10.1146/annurev-arplant-080620-024221","url":null,"abstract":"The perception of light signals by the phytochrome family of photoreceptors has a crucial influence on almost all aspects of growth and development throughout a plant's life cycle. The holistic regulatory networks orchestrated by phytochromes, including conformational switching, subcellular localization, direct protein-protein interactions, transcriptional and posttranscriptional regulations, and translational and posttranslational controls to promote photomorphogenesis, are highly coordinated and regulated at multiple levels. During the past decade, advances using innovative approaches have substantially broadened our understanding of the sophisticated mechanisms underlying the phytochrome-mediated light signaling pathways. This review discusses and summarizes these discoveries of the role of the modular structure of phytochromes, phytochrome-interacting proteins, and their functions; the reciprocal modulation of both positive and negative regulators in phytochrome signaling; the regulatory roles of phytochromes in transcriptional activities, alternative splicing, and translational regulation; and the kinases and E3 ligases that modulate PHYTOCHROME INTERACTING FACTORs to optimize photomorphogenesis.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"72 ","pages":"217-244"},"PeriodicalIF":23.9,"publicationDate":"2021-06-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10988782/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25508439","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Extension of Plant Phenotypes by the Foliar Microbiome. 植物表型的叶面微生物扩展。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2021-06-17 DOI: 10.1146/annurev-arplant-080620-114342

Christine V Hawkes, Rasmus Kjøller, Jos M Raaijmakers, Leise Riber, Svend Christensen, Simon Rasmussen, Jan H Christensen, Anders Bjorholm Dahl, Jesper Cairo Westergaard, Mads Nielsen, Gina Brown-Guedira, Lars Hestbjerg Hansen

{"title":"Extension of Plant Phenotypes by the Foliar Microbiome.","authors":"Christine V Hawkes, Rasmus Kjøller, Jos M Raaijmakers, Leise Riber, Svend Christensen, Simon Rasmussen, Jan H Christensen, Anders Bjorholm Dahl, Jesper Cairo Westergaard, Mads Nielsen, Gina Brown-Guedira, Lars Hestbjerg Hansen","doi":"10.1146/annurev-arplant-080620-114342","DOIUrl":"https://doi.org/10.1146/annurev-arplant-080620-114342","url":null,"abstract":"The foliar microbiome can extend the host plant phenotype by expanding its genomic and metabolic capabilities. Despite increasing recognition of the importance of the foliar microbiome for plant fitness, stress physiology, and yield, the diversity, function, and contribution of foliar microbiomes to plant phenotypic traits remain largely elusive. The recent adoption of high-throughput technologies is helping to unravel the diversityand spatiotemporal dynamics of foliar microbiomes, but we have yet to resolve their functional importance for plant growth, development, and ecology. Here, we focus on the processes that govern the assembly of the foliar microbiome and the potential mechanisms involved in extended plant phenotypes. We highlight knowledge gaps and provide suggestions for new research directions that can propel the field forward. These efforts will be instrumental in maximizing the functional potential of the foliar microbiome for sustainable crop production.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"72 ","pages":"823-846"},"PeriodicalIF":23.9,"publicationDate":"2021-06-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39244834","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 24