Annual review of plant biology最新文献_第8页

The Role and Activity of SWI/SNF Chromatin Remodelers. SWI/SNF染色质重塑子的作用和活性。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-102820-093218

Tomasz Bieluszewski, Sandhan Prakash, Thomas Roulé, Doris Wagner

{"title":"The Role and Activity of SWI/SNF Chromatin Remodelers.","authors":"Tomasz Bieluszewski, Sandhan Prakash, Thomas Roulé, Doris Wagner","doi":"10.1146/annurev-arplant-102820-093218","DOIUrl":"https://doi.org/10.1146/annurev-arplant-102820-093218","url":null,"abstract":"SWITCH deficient SUCROSE NONFERMENTING (SWI/SNF) class chromatin remodeling complexes (CRCs) use the energy derived from ATP hydrolysis to facilitate access of proteins to the genomic DNA for transcription, replication, and DNA repair. Uniquely, SWI/SNF CRCs can both slide the histone octamer along the DNA or eject it from the DNA. Given their ability to change the chromatin status quo, SWI/SNF remodelers are critical for cell fate reprogramming with pioneer and other transcription factors, for responses to environmental challenges, and for disease prevention. Recent cryo-electron microscopy and mass spectrometry approaches have uncovered different subtypes of SWI/SNF complexes with unique properties and functions. At the same time, tethering or rapid depletion and inactivation of SWI/SNF have provided novel insight into SWI/SNF requirements for enhancer activity and into balancing chromatin compaction and accessibility in concert with Polycomb complexes. Given their importance, SWI/SNF recruitment to genomic locations by transcription factors and their biochemical activity is tightly controlled. This review focuses on recent advances in our understanding of SWI/SNF CRCs in animals and plants and discusses the multiple nuclear and biological roles of SWI/SNF CRCs and how SWI/SNF activity is altered by complex subunit composition, posttranslational modifications, and the chromatin context to support proper development and response to extrinsic cues.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"139-163"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9867908","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 3

Causes of Mutation Rate Variability in Plant Genomes. 植物基因组突变率变异的原因。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070522-054109

Daniela Quiroz, Mariele Lensink, Daniel J Kliebenstein, J Grey Monroe

引用次数: 1

The Power and Perils of De Novo Domestication Using Genome Editing. 利用基因组编辑重新驯化的力量和危险。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-053122-030653

Madelaine E Bartlett, Brook T Moyers, Jarrett Man, Banu Subramaniam, Nokwanda P Makunga

{"title":"The Power and Perils of De Novo Domestication Using Genome Editing.","authors":"Madelaine E Bartlett, Brook T Moyers, Jarrett Man, Banu Subramaniam, Nokwanda P Makunga","doi":"10.1146/annurev-arplant-053122-030653","DOIUrl":"https://doi.org/10.1146/annurev-arplant-053122-030653","url":null,"abstract":"There is intense interest in using genome editing technologies to domesticate wild plants, or accelerate the improvement of weakly domesticated crops, in de novo domestication. Here, we discuss promising genetic strategies, with a focus on plant development. Importantly, genome editing releases us from dependence on random mutagenesis or intraspecific diversity, allowing us to draw solutions more broadly from diversity. However, sparse understanding of the complex genetics of diversity limits innovation. Beyond genetics, we urge the ethical use of indigenous knowledge, indigenous plants, and ethnobotany. De novo domestication still requires conventional breeding by phenotypic selection, especially in the development of crops for diverse environments and cultures. Indeed, uniting genome editing with selective breeding could facilitate faster and better outcomes than either technology alone. Domestication is complex and incompletely understood, involving changes to many aspects of plant biology and human culture. Success in de novo domestication requires careful attention to history and collaboration across traditional boundaries.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"727-750"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9505842","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 9

New Horizons in Plant Photoperiodism. 植物光周期的新视野。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 Epub Date: 2023-02-28 DOI: 10.1146/annurev-arplant-070522-055628

Joshua M Gendron, Dorothee Staiger

{"title":"New Horizons in Plant Photoperiodism.","authors":"Joshua M Gendron, Dorothee Staiger","doi":"10.1146/annurev-arplant-070522-055628","DOIUrl":"10.1146/annurev-arplant-070522-055628","url":null,"abstract":"Photoperiod-measuring mechanisms allow organisms to anticipate seasonal changes to align reproduction and growth with appropriate times of the year. This review provides historical and modern context to studies of plant photoperiodism. We describe how studies of photoperiodic flowering in plants led to the first theoretical models of photoperiod-measuring mechanisms in any organism. We discuss how more recent molecular genetic studies in Arabidopsis and rice have revisited these concepts. We then discuss how photoperiod transcriptomics provides new lessons about photoperiodic gene regulatory networks and the discovery of noncanonical photoperiod-measuring systems housed in metabolic networks of plants. This leads to an examination of nonflowering developmental processes controlled by photoperiod, including metabolism and growth. Finally, we highlight the importance of understanding photoperiodism in the context of climate change, delving into the rapid latitudinal migration of plant species and the potential role of photoperiod-measuring systems in generating photic barriers during migration.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"481-509"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11114106/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9517918","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Mycorrhizal Symbiosis in Plant Growth and Stress Adaptation: From Genes to Ecosystems. 植物生长中的菌根共生与逆境适应:从基因到生态系统。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-061722-090342

Jincai Shi, Xiaolin Wang, Ertao Wang

引用次数: 17

The Game of Timing: Circadian Rhythms Intersect with Changing Environments. 定时游戏:昼夜节律与变化的环境相交。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070522-065329

Kanjana Laosuntisuk, Estefania Elorriaga, Colleen J Doherty

引用次数: 3

Engineering Themes in Plant Forms and Functions. 植物形式和功能的工程主题。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-061422-094751

Rahel Ohlendorf, Nathanael Yi-Hsuen Tan, Naomi Nakayama

引用次数: 0

The Evolution and Evolvability of Photosystem II. 光系统的进化与可进化性2。

IF 21.3 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 Epub Date: 2023-03-08 DOI: 10.1146/annurev-arplant-070522-062509

Thomas Oliver, Tom D Kim, Joko P Trinugroho, Violeta Cordón-Preciado, Nitara Wijayatilake, Aaryan Bhatia, A William Rutherford, Tanai Cardona

{"title":"The Evolution and Evolvability of Photosystem II.","authors":"Thomas Oliver, Tom D Kim, Joko P Trinugroho, Violeta Cordón-Preciado, Nitara Wijayatilake, Aaryan Bhatia, A William Rutherford, Tanai Cardona","doi":"10.1146/annurev-arplant-070522-062509","DOIUrl":"10.1146/annurev-arplant-070522-062509","url":null,"abstract":"Photosystem II is the water-oxidizing and O2-evolving enzyme of photosynthesis. How and when this remarkable enzyme arose are fundamental questions in the history of life that have remained difficult to answer. Here, recent advances in our understanding of the origin and evolution of photosystem II are reviewed and discussed in detail. The evolution of photosystem II indicates that water oxidation originated early in the history of life, long before the diversification of cyanobacteria and other major groups of prokaryotes, challenging and transforming current paradigms on the evolution of photosynthesis. We show that photosystem II has remained virtually unchanged for billions of years, and yet the nonstop duplication process of the D1 subunit of photosystem II, which controls photochemistry and catalysis, has enabled the enzyme to become adaptable to variable environmental conditions and even to innovate enzymatic functions beyond water oxidation. We suggest that this evolvability can be harnessed to develop novel light-powered enzymes with the capacity to carry out complex multistep oxidative transformations for sustainable biocatalysis.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"225-257"},"PeriodicalIF":21.3,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9884311","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Lipid Droplets: Packing Hydrophobic Molecules Within the Aqueous Cytoplasm. 脂滴:在含水细胞质内包装疏水分子。

IF 23.9 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 DOI: 10.1146/annurev-arplant-070122-021752

Athanas Guzha, Payton Whitehead, Till Ischebeck, Kent D Chapman

{"title":"Lipid Droplets: Packing Hydrophobic Molecules Within the Aqueous Cytoplasm.","authors":"Athanas Guzha, Payton Whitehead, Till Ischebeck, Kent D Chapman","doi":"10.1146/annurev-arplant-070122-021752","DOIUrl":"https://doi.org/10.1146/annurev-arplant-070122-021752","url":null,"abstract":"Lipid droplets, also known as oil bodies or lipid bodies, are plant organelles that compartmentalize neutral lipids as a hydrophobic matrix covered by proteins embedded in a phospholipid monolayer. Some of these proteins have been known for decades, such as oleosins, caleosins, and steroleosins, whereas a host of others have been discovered more recently with various levels of abundance on lipid droplets, depending on the tissue and developmental stage. In addition to a growing inventory of lipid droplet proteins, the subcellular machinery that contributes to the biogenesis and degradation of lipid droplets is being identified and attention is turning to more mechanistic questions regarding lipid droplet dynamics. While lipid droplets are mostly regarded as storage deposits for carbon and energy in lipid-rich plant tissues such as seeds, these organelles are present in essentially all plant cells, where they display additional functions in signaling, membrane remodeling, and the compartmentalization of a variety of hydrophobic components. Remarkable metabolic engineering efforts have demonstrated the plasticity of vegetative tissues such as leaves to synthesize and package large amounts of storage lipids, which enable future applications in bioenergy and the engineering of high-value lipophilic compounds. Here, we review the growing body of knowledge about lipid droplets in plant cells, describe the evolutionary similarity and divergence in their associated subcellular machinery, and point to gaps that deserve future attention.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"195-223"},"PeriodicalIF":23.9,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9505848","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 12

Merging Signaling with Structure: Functions and Mechanisms of Plant Glutamate Receptor Ion Channels. 信号与结构的融合：植物谷氨酸受体离子通道的功能和机制。

IF 21.3 1区生物学

Annual review of plant biology Pub Date : 2023-05-22 Epub Date: 2023-02-28 DOI: 10.1146/annurev-arplant-070522-033255

Alexander A Simon, Carlos Navarro-Retamal, José A Feijó

{"title":"Merging Signaling with Structure: Functions and Mechanisms of Plant Glutamate Receptor Ion Channels.","authors":"Alexander A Simon, Carlos Navarro-Retamal, José A Feijó","doi":"10.1146/annurev-arplant-070522-033255","DOIUrl":"10.1146/annurev-arplant-070522-033255","url":null,"abstract":"Plant glutamate receptor-like (GLR) genes encode ion channels with demonstrated roles in electrical and calcium (Ca2+) signaling. The expansion of the GLR family along the lineage of land plants, culminating in the appearance of a multiclade system among flowering plants, has been a topic of interest since their discovery nearly 25 years ago. GLRs are involved in many physiological processes, from wound signaling to transcriptional regulation to sexual reproduction. Emerging evidence supports the notion that their fundamental functions are conserved among different groups of plants as well. In this review, we update the physiological and genetic evidence for GLRs, establishing their role in signaling and cell-cell communication. Special emphasis is given to the recent discussion of GLRs' atomic structures. Along with functional assays, a structural view of GLRs' molecular organization presents a window for novel hypotheses regarding the molecular mechanisms underpinning signaling associated with the ionic fluxes that GLRs regulate. Newly uncovered transcriptional regulations associated with GLRs-which propose the involvement of genes from all clades ofArabidopsis thaliana in ways not previously observed-are discussed in the context of the broader impacts of GLR activity. We posit that the functions of GLRs in plant biology are probably much broader than anticipated, but describing their widespread involvement will only be possible with (a) a comprehensive understanding of the channel's properties at the molecular and structural levels, including protein-protein interactions, and (b) the design of new genetic approaches to explore stress and pathogen responses where precise transcriptional control may result in more precise testable hypotheses to overcome their apparent functional redundancies.","PeriodicalId":8335,"journal":{"name":"Annual review of plant biology","volume":"74 ","pages":"415-452"},"PeriodicalIF":21.3,"publicationDate":"2023-05-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11479355/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9566264","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0