Archives of pathology & laboratory medicine最新文献

筛选
英文 中文
Consultations in Eye Pathology: Experience at an Ophthalmology Specialty Hospital. 眼科病理学咨询:眼科专科医院的经验。
IF 3.2 3区 医学
Archives of pathology & laboratory medicine Pub Date : 2024-12-01 DOI: 10.5858/arpa.2022-0507-RA
Tatyana Milman, Orlando G Gonzalez Martinez, Martin Calotti, Roger K Henry, Ralph C Eagle
{"title":"Consultations in Eye Pathology: Experience at an Ophthalmology Specialty Hospital.","authors":"Tatyana Milman, Orlando G Gonzalez Martinez, Martin Calotti, Roger K Henry, Ralph C Eagle","doi":"10.5858/arpa.2022-0507-RA","DOIUrl":"10.5858/arpa.2022-0507-RA","url":null,"abstract":"<p><strong>Context.—: </strong>Ophthalmic pathology is a discipline that relies heavily on a knowledge of clinical ophthalmology. The diagnosis of ocular and periocular lesions can be challenging because some lesions and diseases are unique to this region, whereas others may demonstrate site-specific differences from nonocular counterparts. Because of these challenges, ocular and periocular biopsies are frequently referred to specialized ophthalmic pathology centers for second-opinion diagnoses.</p><p><strong>Objective.—: </strong>To analyze the referral patterns, diagnostic challenges, and diagnostic discrepancies for second-opinion referrals at a dedicated ophthalmic pathology laboratory with an emphasis on lesions of special interest in ophthalmic pathology.</p><p><strong>Data sources.—: </strong>Data sources included the pathology records of all slides and blocks received in consultation at the referral eye pathology center between December 1, 2015, and December 1, 2022, the personal experience of senior authors, and published peer-reviewed literature.</p><p><strong>Conclusions.—: </strong>Corneal, intraocular, and conjunctival biopsies are the most common types of cases received in consultation without the referring pathologist's diagnosis, likely reflecting diagnostic challenges. Degenerative intraocular processes occasionally raise concern for a neoplasm. Conjunctival melanocytic lesions are the most common conjunctival biopsies referred for second-opinion diagnosis and require careful tissue sampling and clinical-pathologic correlation. Careful clinical-pathologic correlation, a high level of suspicion, and adequate sampling also are required for the accurate diagnosis of periocular sebaceous carcinoma. The diagnostic discrepancies involving uveal, retinal, conjunctival, eyelid, and temporal artery biopsies are most likely to adversely influence patient management and possible outcome. Such specimens may benefit from referral to specialized ophthalmic pathology laboratories.</p>","PeriodicalId":8305,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":"1279-1291"},"PeriodicalIF":3.2,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9727721","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
New Entities and Concepts in Salivary Gland Tumor Pathology: The Role of Molecular Alterations. 唾液腺肿瘤病理学的新实体和新概念:分子变化的作用。
IF 3.2 3区 医学
Archives of pathology & laboratory medicine Pub Date : 2024-11-01 DOI: 10.5858/arpa.2023-0001-RA
Raja R Seethala
{"title":"New Entities and Concepts in Salivary Gland Tumor Pathology: The Role of Molecular Alterations.","authors":"Raja R Seethala","doi":"10.5858/arpa.2023-0001-RA","DOIUrl":"10.5858/arpa.2023-0001-RA","url":null,"abstract":"<p><strong>Context.—: </strong>Salivary gland tumors are rare tumor types for which the molecular understanding has resulted in a rapid expansion and shuffling of entities. These changes are reflected in the 5th edition World Health Organization Classification of Head and Neck Tumours (WHO 5th edition), although many nuances still remain.</p><p><strong>Objective.—: </strong>To review how molecular alterations have helped recategorize, justify, and reinstate entities into our lexicon as well as defining interrelationships between categories, new entities, and subtypes. Furthermore, newer theranostic applications to molecular phenotype will be summarized.</p><p><strong>Data sources.—: </strong>World Health Organization Classification of Head and Neck Tumours (WHO 3rd through 5th editions), literature review, and personal and institutional experience.</p><p><strong>Conclusions.—: </strong>Molecular alterations have helped reclassify, retain, and create new categories by augmenting rather than replacing standard criteria. Key entities that have emerged include sclerosing polycystic adenoma, microsecretory adenocarcinoma, and mucinous adenocarcinoma. Molecular phenotypes solidify the range of morphology in established entities such as mucoepidermoid carcinoma and facilitate connectivity between entities. Molecular characteristics now allow for targeted therapeutic approaches for secretory carcinoma and adenoid cystic carcinoma.</p>","PeriodicalId":8305,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":"1183-1195"},"PeriodicalIF":3.2,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10101804","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Update on Sinonasal Tract Malignancies: Advances in Diagnostic Modalities. 鼻窦道恶性肿瘤的最新进展:诊断方式的进展。
IF 3.2 3区 医学
Archives of pathology & laboratory medicine Pub Date : 2024-10-01 DOI: 10.5858/arpa.2022-0447-RA
Maria A Gubbiotti, Virginia LiVolsi, Kathleen T Montone
{"title":"Update on Sinonasal Tract Malignancies: Advances in Diagnostic Modalities.","authors":"Maria A Gubbiotti, Virginia LiVolsi, Kathleen T Montone","doi":"10.5858/arpa.2022-0447-RA","DOIUrl":"10.5858/arpa.2022-0447-RA","url":null,"abstract":"<p><strong>Context.—: </strong>Sinonasal tract malignancies are rare cancers with frequent morphologic overlap. Given the similar histologic profiles seen in many of these entities, they often present a diagnostic challenge to the practicing pathologist.</p><p><strong>Objective.—: </strong>To provide a streamlined algorithm using histologic clues, immunohistochemical profiles, and molecular assays to aid in diagnosis of these lesions.</p><p><strong>Data sources.—: </strong>Sources were the World Health Organization Tumor Classification, literature review, and institutional experience.</p><p><strong>Conclusions.—: </strong>Although many sinonasal tract malignancies show similar histology, distinct immunohistochemical and molecular profiles can help parse out differences, thereby facilitating diagnosis for the pathologist.</p>","PeriodicalId":8305,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":"1082-1091"},"PeriodicalIF":3.2,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9111639","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Update on Salivary Gland Fine-Needle Aspiration and the Milan System for Reporting Salivary Gland Cytopathology. 唾液腺细针抽吸术和唾液腺细胞病理学米兰报告系统的最新进展。
IF 3.2 3区 医学
Archives of pathology & laboratory medicine Pub Date : 2024-10-01 DOI: 10.5858/arpa.2022-0529-RA
Marc Pusztaszeri, Esther Diana Rossi, William C Faquin
{"title":"Update on Salivary Gland Fine-Needle Aspiration and the Milan System for Reporting Salivary Gland Cytopathology.","authors":"Marc Pusztaszeri, Esther Diana Rossi, William C Faquin","doi":"10.5858/arpa.2022-0529-RA","DOIUrl":"10.5858/arpa.2022-0529-RA","url":null,"abstract":"<p><strong>Context.—: </strong>Fine-needle aspiration (FNA) is a well-established procedure for the diagnosis and management of salivary gland lesions, despite challenges imposed by salivary gland tumor diversity, complexity, and cytomorphologic overlap. Until recently, the reporting of salivary gland FNA specimens was inconsistent among different institutions throughout the world, leading to diagnostic confusion among pathologists and clinicians. In 2015, an international group of pathologists initiated the development of an evidence-based tiered classification system for reporting salivary gland FNA specimens, the Milan System for Reporting Salivary Gland Cytopathology (MSRSGC). The MSRSGC consists of 6 diagnostic categories, which incorporate the morphologic heterogeneity and overlap among various nonneoplastic, benign, and malignant lesions of the salivary glands. In addition, each MSRSGC diagnostic category is associated with a risk of malignancy and management recommendations.</p><p><strong>Objective.—: </strong>To review the current status of salivary gland FNA, core needle biopsies, ancillary studies, and the beneficial role of the MSRSGC in providing a framework for reporting salivary gland lesions and guiding clinical management.</p><p><strong>Data sources.—: </strong>Literature review and personal institutional experience.</p><p><strong>Conclusions.—: </strong>The main goal of the MSRSGC is to improve communication between cytopathologists and treating clinicians, while also facilitating cytologic-histologic correlation, quality improvement, and research. Since its implementation, the MSRSGC has gained international acceptance as a tool to improve reporting standards and consistency in this complex diagnostic area, and it has been endorsed by the 2021 American Society of Clinical Oncology management guidelines for salivary gland cancer. The large amount of data from published studies using MSRSGC served as a basis for the recent update of the MSRSGC.</p>","PeriodicalId":8305,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":"1092-1104"},"PeriodicalIF":3.2,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9522543","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
BRAF Exon 15 Mutations in the Evaluation of Well-Differentiated Epithelial Nephroblastic Neoplasms in Children: A Report From the Children's Oncology Group Study AREN03B2. 儿童分化良好的上皮性肾母细胞肿瘤评估中的 BRAF 15 号外显子突变:儿童肿瘤学组 AREN03B2 研究报告》。
IF 3.2 3区 医学
Archives of pathology & laboratory medicine Pub Date : 2024-10-01 DOI: 10.5858/arpa.2022-0528-OA
Jeffery A Goldstein, Lindsay A Renfro, Lawrence J Jennings, Elizabeth A Mullen, James Geller, Kelly Vallance, Conrad V Fernandez, Elizabeth J Perlman
{"title":"BRAF Exon 15 Mutations in the Evaluation of Well-Differentiated Epithelial Nephroblastic Neoplasms in Children: A Report From the Children's Oncology Group Study AREN03B2.","authors":"Jeffery A Goldstein, Lindsay A Renfro, Lawrence J Jennings, Elizabeth A Mullen, James Geller, Kelly Vallance, Conrad V Fernandez, Elizabeth J Perlman","doi":"10.5858/arpa.2022-0528-OA","DOIUrl":"10.5858/arpa.2022-0528-OA","url":null,"abstract":"<p><strong>Context.—: </strong>The distinction between well-differentiated epithelial favorable-histology Wilms tumor (EFHWT) and metanephric adenoma (MA) in children has historically been determined by the required absence of both a fibrous pseudocapsule and mitotic activity in MA. More recently these features have been allowed in adult MA. Mutations in exon 15 of the BRAF gene are reported in up to 88% of MAs but have not been reported in EFHWTs in children lacking MA features.</p><p><strong>Objective.—: </strong>To clarify the pathologic and molecular features used to distinguish between pediatric MA and EFHWT.</p><p><strong>Design.—: </strong>Stage I epithelial tumors classified as EFHWT on central review (36 patients) were identified from the Children's Oncology Group AREN03B2 study. Thirteen tumors had morphologic features overlapping those of MA and 23 lacked such features; 35 of 36 had tissue available for sequencing of BRAF.</p><p><strong>Results.—: </strong>Patients with EFHWTs with MA features (13) were older (mean, 8.4 versus 1.9 years; P < .001), had smaller tumor diameters (mean, 6.0 versus 9.7 cm; P < .001), and had fewer mitoses (mean, 1 versus 48 mitoses per 10 high-power fields; P < .001) than patients with EFHWT lacking MA features (23). All EFHWTs with MA features contained at least a partial fibrous pseudocapsule; 7 of 12 (58%) had a BRAF exon 15 mutation. No BRAF exon 15 mutations were identified in 23 EFHWTs lacking MA features. None of the 13 EFHWT patients with MA features have experienced relapse (median follow-up 5.9 years).</p><p><strong>Conclusions.—: </strong>Pediatric epithelial neoplasms with features of MA that show partial encapsulation and/or modest mitotic activity may be classified as MAs. Although BRAF mutation supports the diagnosis of MA, it is not required for the diagnosis.</p>","PeriodicalId":8305,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":"e362-e366"},"PeriodicalIF":3.2,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11186972/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138794576","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Neoplastic Progression in Intraductal Papillary Neoplasm of the Bile Duct. 胆管内导管乳头状瘤的肿瘤进展
IF 3.2 3区 医学
Archives of pathology & laboratory medicine Pub Date : 2024-09-01 DOI: 10.5858/arpa.2022-0407-RA
Yoh Zen, Masayuki Akita
{"title":"Neoplastic Progression in Intraductal Papillary Neoplasm of the Bile Duct.","authors":"Yoh Zen, Masayuki Akita","doi":"10.5858/arpa.2022-0407-RA","DOIUrl":"10.5858/arpa.2022-0407-RA","url":null,"abstract":"<p><strong>Context.—: </strong>Intraductal papillary neoplasm of the bile duct (IPNB) is classified into types 1 and 2 based on criteria proposed in 2019. Recent studies investigated the clinicopathologic and molecular features of IPNB, which contributed to a more detailed understanding of this undercharacterized neoplasm.</p><p><strong>Objective.—: </strong>To summarize driver gene mutations, radiologic tumor evolution, and a potentially unique pattern of tumor progression in IPNB.</p><p><strong>Data sources.—: </strong>Data were derived from a literature review and personal clinical and research experiences.</p><p><strong>Conclusions.—: </strong>In contrast to de novo cholangiocarcinoma, type 1 IPNB often has mutations in APC, CTNNB1, STK11, and GNAS. These molecular features are shared with intraductal papillary mucinous neoplasm of the pancreas; however, the frequencies of individual gene abnormalities differ between these 2 neoplasms. A radiologic review of sequential images suggested that type 1 IPNB is a slow-growing neoplasm, with an ∼1-cm increase in size every 2 to 3 years, and remains in a noninvasive state for many years. A similar papillary neoplasm may develop in the biliary tree years after the complete surgical resection of IPNB. The second neoplasm has the same genetic abnormalities as the first neoplasm, indicating intrabiliary implantation rather than multifocal lesions. In contrast to type 1 IPNB, most cases of type 2 IPNB have invasive malignancy at the initial presentation. Type 2 IPNB shares many clinicopathologic and molecular features with de novo cholangiocarcinoma, questioning the distinctness of this tumor entity. The molecular mechanisms underlying malignant transformation in IPNB warrant further study.</p>","PeriodicalId":8305,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":"989-996"},"PeriodicalIF":3.2,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9291918","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Neoplastic Progression in Neuroendocrine Neoplasms of the Pancreas. 胰腺神经内分泌肿瘤的肿瘤进展。
IF 3.2 3区 医学
Archives of pathology & laboratory medicine Pub Date : 2024-09-01 DOI: 10.5858/arpa.2022-0417-RA
Claudio Luchini, Aldo Scarpa
{"title":"Neoplastic Progression in Neuroendocrine Neoplasms of the Pancreas.","authors":"Claudio Luchini, Aldo Scarpa","doi":"10.5858/arpa.2022-0417-RA","DOIUrl":"10.5858/arpa.2022-0417-RA","url":null,"abstract":"<p><strong>Context.—: </strong>Pancreatic neuroendocrine neoplasms (PanNENs) represent a heterogeneous group of epithelial tumors of the pancreas showing neuroendocrine differentiation. These neoplasms are classified into well-differentiated pancreatic neuroendocrine tumors (PanNETs), which include G1, G2, and G3 tumors, and poorly differentiated pancreatic neuroendocrine carcinomas (PanNECs), which are G3 by definition. This classification mirrors clinical, histologic, and behavioral differences and is also supported by robust molecular evidence.</p><p><strong>Objective.—: </strong>To summarize and discuss the state of the art regarding neoplastic progression of PanNENs. A better comprehension of the mechanisms underpinning neoplastic evolution and progression of these neoplasms may open new horizons for expanding biologic knowledge and ultimately for addressing new therapeutic strategies for patients with PanNENs.</p><p><strong>Data sources.—: </strong>Literature review of published studies and the authors' own work.</p><p><strong>Conclusions.—: </strong>PanNETs can be seen as a unique category, where G1-G2 tumors may progress to G3 tumors mainly driven by DAXX/ATRX mutations and alternative lengthening of telomeres. Conversely, PanNECs display totally different histomolecular features more closely related to pancreatic ductal adenocarcinoma, including TP53 and Rb alterations. They seem to derive from a nonneuroendocrine cell of origin. Even the study of PanNEN precursor lesions corroborates the rationale of considering PanNETs and PanNECs as separate and distinct entities. Improving the knowledge regarding this dichotomous distinction, which guides tumor evolution and progression, will represent a critical basis for PanNEN precision oncology.</p>","PeriodicalId":8305,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":"975-979"},"PeriodicalIF":3.2,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10861176","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Oncocytic Follicular Cell-Derived Thyroid Tumors With Papillary Growth Pattern: A Clinicopathologic Study of 32 Cases. 具有乳头状生长模式的肿瘤细胞滤泡细胞衍生甲状腺瘤:32例临床病理学研究
IF 3.2 3区 医学
Archives of pathology & laboratory medicine Pub Date : 2024-09-01 DOI: 10.5858/arpa.2023-0309-OA
David Suster, Natali Ronen, Tamara Giorgadze, Ada Baisre-de Leon, Ibsen Montalvan, Saul Suster
{"title":"Oncocytic Follicular Cell-Derived Thyroid Tumors With Papillary Growth Pattern: A Clinicopathologic Study of 32 Cases.","authors":"David Suster, Natali Ronen, Tamara Giorgadze, Ada Baisre-de Leon, Ibsen Montalvan, Saul Suster","doi":"10.5858/arpa.2023-0309-OA","DOIUrl":"10.5858/arpa.2023-0309-OA","url":null,"abstract":"<p><strong>Context.—: </strong>Oncocytic thyroid tumors displaying a papillary growth pattern are rare and may cause diagnostic problems.</p><p><strong>Objective.—: </strong>To examine the clinicopathologic features of a series of 32 follicular cell-derived tumors composed of cells with oncocytic cytoplasm and displaying papillary architecture.</p><p><strong>Design.—: </strong>Thirty-two cases were collected and studied to assess clinicopathologic features, including immunohistochemical and molecular testing for BRAF V600E.</p><p><strong>Results.—: </strong>The patients were 26 women and 6 men, aged 17 to 77 years. The nodules ranged from 0.3 to 6.0 cm. Eighteen cases showed features of oncocytic hyperplastic nodules and were identified against a background of thyroid follicular nodular disease; 4 cases showed features of oncocytic follicular adenoma; and 10 cases corresponded to carcinomas with oncocytic and papillary features. Nuclear features of papillary thyroid carcinoma were absent or exceedingly rare. All cases were negative for HBME-1 and cytokeratin 19 (CK19) and wild type for BRAF V600E. Follow-up in 25 patients showed that all patients with hyperplastic nodules and oncocytic follicular adenomas were alive and well and free of disease from 7 to 20 years. One patient with oncocytic follicular carcinoma showed metastases and died of tumor at 16 months; 2 patients with carcinoma had metastases and recurrence at 6 and 7 years; and 5 patients with invasive tumors were free of disease from 5 to 10 years.</p><p><strong>Conclusions.—: </strong>Oncocytic thyroid tumors with papillary features can span a spectrum from benign hyperplastic, to encapsulated neoplastic, to invasive malignant lesions. Owing to their papillary features, it is important not to confuse them for other types of thyroid tumors, such as oncocytic papillary thyroid carcinoma.</p>","PeriodicalId":8305,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":"997-1006"},"PeriodicalIF":3.2,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138794592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Back-to-Back Comparison of Third-Generation Sequencing and Next-Generation Sequencing in Carrier Screening of Thalassemia. 第三代测序与下一代测序在地中海贫血症携带者筛查中的背靠背比较。
IF 3.2 3区 医学
Archives of pathology & laboratory medicine Pub Date : 2024-07-01 DOI: 10.5858/arpa.2022-0168-OA
Renliang Huang, Yinyin Liu, Jing Xu, Dan Lin, Aiping Mao, Liuqing Yang, Gaobu Zhong, Huoniao Wang, Ruofan Xu, Yiwei Chen, Qiaomiao Zhou
{"title":"Back-to-Back Comparison of Third-Generation Sequencing and Next-Generation Sequencing in Carrier Screening of Thalassemia.","authors":"Renliang Huang, Yinyin Liu, Jing Xu, Dan Lin, Aiping Mao, Liuqing Yang, Gaobu Zhong, Huoniao Wang, Ruofan Xu, Yiwei Chen, Qiaomiao Zhou","doi":"10.5858/arpa.2022-0168-OA","DOIUrl":"10.5858/arpa.2022-0168-OA","url":null,"abstract":"<p><strong>Context.—: </strong>Recently, new technologies, such as next-generation sequencing and third-generation sequencing, have been used in carrier screening of thalassemia. However, there is no direct comparison between the 2 methods in carrier screening of thalassemia.</p><p><strong>Objective.—: </strong>To compare the clinical performance of third-generation sequencing with next-generation sequencing in carrier screening of thalassemia.</p><p><strong>Design.—: </strong>Next-generation sequencing and third-generation sequencing were simultaneously conducted for 1122 individuals in Hainan Province.</p><p><strong>Results.—: </strong>Among 1122 genetic results, 1105 (98.48%) were concordant and 17 (1.52%) were discordant between the 2 methods. Among the 17 discordant results, 4 were common thalassemia variants, 9 were rare thalassemia variants, and 4 were variations with unknown pathogenicity. Sanger sequencing and polymerase chain reaction for discordant samples confirmed all the results of third-generation sequencing. Among the 685 individuals with common and rare thalassemia variants detected by third-generation sequencing, 512 (74.74%) were carriers of α-thalassemia, 110 (16.06%) were carriers of β-thalassemia, and 63 (9.20%) had coinheritance of α-thalassemia and β-thalassemia. Three thalassemia variants were reported for the first time in Hainan Province, including -THAI, -α2.4, and ααααanti3.7. Eleven variants with potential pathogenicity were identified in 36 patients with positive hemoglobin test results. Among 52 individuals with negative hemoglobin test results, 17 were identified with thalassemia variants. In total, third-generation sequencing and next-generation sequencing correctly detected 763 and 746 individuals with variants, respectively. Third-generation sequencing yielded a 2.28% (17 of 746) increment compared with next-generation sequencing.</p><p><strong>Conclusions.—: </strong>Third-generation sequencing was demonstrated to be a more accurate and reliable approach in carrier screening of thalassemia compared with next-generation sequencing.</p>","PeriodicalId":8305,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":"797-804"},"PeriodicalIF":3.2,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10525367","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Creation of a Quality Payment Program Measure for Mismatch Repair or Microsatellite Instability Biomarker Testing Status in Colorectal, Endometrial, Gastroesophageal, or Small Bowel Carcinoma. 针对结直肠癌、子宫内膜癌、胃食管癌或小肠癌的错配修复或微卫星不稳定性生物标记物检测状况制定质量付费计划衡量标准。
IF 3.2 3区 医学
Archives of pathology & laboratory medicine Pub Date : 2024-06-01 DOI: 10.5858/arpa.2022-0418-OA
Gregary T Bocsi, Jennifer Laudadio, Richa Jain, Sarah M Eakin, Amarpreet Bhalla, Jonathan A Rosenberg, Jennifer K Maratt, Sonia S Kupfer, David A Leiman, Diana M Cardona
{"title":"Creation of a Quality Payment Program Measure for Mismatch Repair or Microsatellite Instability Biomarker Testing Status in Colorectal, Endometrial, Gastroesophageal, or Small Bowel Carcinoma.","authors":"Gregary T Bocsi, Jennifer Laudadio, Richa Jain, Sarah M Eakin, Amarpreet Bhalla, Jonathan A Rosenberg, Jennifer K Maratt, Sonia S Kupfer, David A Leiman, Diana M Cardona","doi":"10.5858/arpa.2022-0418-OA","DOIUrl":"10.5858/arpa.2022-0418-OA","url":null,"abstract":"<p><strong>Context.—: </strong>Quality measures that are supported by evidence-based clinical practice guidelines are preferred for assessing the quality of pathologists' practices. Careful testing of a measure ensures that scores obtained by that measure reflect the quality of a pathologist's practice.</p><p><strong>Objective.—: </strong>To specify a new quality measure and to demonstrate through testing that it is suitable for measuring pathologists' appropriate incorporation of information regarding microsatellite instability (MSI) and/or mismatch repair (MMR) status in pathology reports for colorectal, endometrial, gastroesophageal, and small bowel carcinoma.</p><p><strong>Design.—: </strong>The College of American Pathologists collaborated with the American Gastroenterological Association to specify and test the new measure. Face validity testing was used to investigate the validity of the measure. Feasibility testing was conducted to understand if data elements required by the measure specification were readily accessible. Signal-to-noise analysis was used to characterize the measure's reliability.</p><p><strong>Results.—: </strong>Guideline recommendations for MSI and/or MMR testing supported specifications for the measure. Face validity testing indicated that the measure could distinguish the quality of care provided. Data elements required by the measure specification were found to be accessible, which supported the measure's feasibility. Reliability testing showed that differences in measure score were attributable to real differences in performance rather than random variation in scoring.</p><p><strong>Conclusions.—: </strong>The Mismatch Repair or Microsatellite Instability Biomarker Testing Status in Colorectal Carcinoma, Endometrial, Gastroesophageal, or Small Bowel Carcinoma measure was appropriately specified, and testing demonstrated that it is well suited for characterizing the quality of pathologists' communication of MMR and/or MSI status.</p>","PeriodicalId":8305,"journal":{"name":"Archives of pathology & laboratory medicine","volume":" ","pages":"728-734"},"PeriodicalIF":3.2,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12369274/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10296120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
相关产品
×
本文献相关产品
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信
小红书