Annual review of phytopathology最新文献

{"title":"Evolving Archetypes: Learning from Pathogen Emergence on a Nonmodel Host.","authors":"Markéta Vlková-Žlebková, Fang Wei Yuen, Honour C McCann","doi":"10.1146/annurev-phyto-021622-095110","DOIUrl":"10.1146/annurev-phyto-021622-095110","url":null,"abstract":"<p><p>Research initiatives undertaken in response to disease outbreaks accelerate our understanding of microbial evolution, mechanisms of virulence and resistance, and plant-pathogen coevolutionary interactions. The emergence and global spread of <i>Pseudomonas syringae</i> pv. <i>actinidiae</i> (Psa) on kiwifruit (<i>Actinidia chinensis</i>) showed that there are parallel paths to host adaptation and antimicrobial resistance evolution, accelerated by the movement of mobile elements. Significant progress has been made in identifying type 3 effectors required for virulence and recognition in <i>A. chinensis</i> and <i>Actinidia arguta</i>, broadening our understanding of how host-mediated selection shapes virulence. The rapid development of <i>Actinidia</i> genomics after the Psa3 pandemic began has also generated new insight into molecular mechanisms of immunity and resistance gene evolution in this recently domesticated, nonmodel host. These findings include the presence of close homologs of known resistance genes <i>RPM1</i> and <i>RPS2</i> as well as the novel expansion of CC_G10-NLRs (nucleotide-binding leucine-rich repeats) in <i>Actinidia</i> spp. The advances and approaches developed during the pandemic response can be applied to new pathosystems and new outbreak events.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":" ","pages":"49-68"},"PeriodicalIF":9.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141417523","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Regulation of Bacterial Growth and Behavior by Host Plant.","authors":"Satoru Nakagami, Zhe Wang, Xiaowei Han, Kenichi Tsuda","doi":"10.1146/annurev-phyto-010824-023359","DOIUrl":"10.1146/annurev-phyto-010824-023359","url":null,"abstract":"<p><p>Plants are associated with diverse bacteria in nature. Some bacteria are pathogens that decrease plant fitness, and others are beneficial bacteria that promote plant growth and stress resistance. Emerging evidence also suggests that plant-associated commensal bacteria collectively contribute to plant health and are essential for plant survival in nature. Bacteria with different characteristics simultaneously colonize plant tissues. Thus, plants need to accommodate bacteria that provide service to the host plants, but they need to defend against pathogens at the same time. How do plants achieve this? In this review, we summarize how plants use physical barriers, control common goods such as water and nutrients, and produce antibacterial molecules to regulate bacterial growth and behavior. Furthermore, we highlight that plants use specialized metabolites that support or inhibit specific bacteria, thereby selectively recruiting plant-associated bacterial communities and regulating their function. We also raise important questions that need to be addressed to improve our understanding of plant-bacteria interactions.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":" ","pages":"69-96"},"PeriodicalIF":9.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141299873","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Disease Management in Regenerative Cropping in the Context of Climate Change and Regulatory Restrictions.","authors":"A C Newton, H E Creissen, I A Erreguerena, N D Havis","doi":"10.1146/annurev-phyto-121423-042037","DOIUrl":"10.1146/annurev-phyto-121423-042037","url":null,"abstract":"<p><p>Regenerative agriculture as a term and concept has gained much traction over recent years. Many farmers are convinced that by adopting these principles they will be able to address the triple crisis of biodiversity loss, climate change, and food security. However, the impact of regenerative agriculture practices on crop pathogens and their management has received little attention from the scientific community. Significant changes to cropping systems may result in certain diseases presenting more or less of a threat. Shifts in major diseases may have significant implications regarding optimal integrated pest management (IPM) strategies that aim to improve profitability and productivity in an environmentally sensitive manner. In particular, many aspects of regenerative agriculture change risk levels and risk management in ways that are central to effective IPM. This review outlines some of the challenges, gaps, and opportunities in our understanding of appropriate approaches for managing crop diseases in regenerative cropping systems.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":" ","pages":"337-356"},"PeriodicalIF":9.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141475795","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Free-Riding in Plant Health: A Social-Ecological Systems Approach to Collective Action.","authors":"Sara Garcia-Figuera, Sarah R Lowder, Mark N Lubell, Walter F Mahaffee, Neil McRoberts, David H Gent","doi":"10.1146/annurev-phyto-121423-041950","DOIUrl":"10.1146/annurev-phyto-121423-041950","url":null,"abstract":"<p><p>Plant disease epidemics often transcend land management boundaries, creating a collective-action problem where a group must cooperate in a common effort to maximize individual and group benefits. Drawing upon the social-ecological systems framework and associated design principles, we review variables of resource systems, resource units, actors, and governance systems relevant to collective action in plant health. We identify a need to better characterize how attributes of epidemics determine the usefulness of collective management, what influences actors' decisions to participate, what governance systems fit different plant health threats, and how these subsystems interact to lead to plant health outcomes. We emphasize that there is not a single governance structure that ensures collective action but rather a continuum of structures that depend on the key system variables identified. An integrated social-ecological systems approach to collective action in plant health should enable institutional designs to better fit specific plant health challenges.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":" ","pages":"357-384"},"PeriodicalIF":9.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140896976","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Theories for Understanding the Effect of Impact Assessment and Project Evaluation on the Practice of Science.","authors":"Neil McRoberts, Samuel Brinker, Kaity Coleman","doi":"10.1146/annurev-phyto-080417-050125","DOIUrl":"10.1146/annurev-phyto-080417-050125","url":null,"abstract":"<p><p>We examine the phenomenon of impact assessment in the practice of scientific research, paying attention to the context in which project evaluation is used in federally funded research on plant health in the United States. Our analysis, which is derived from systems theory, carries out a particular view of the research process. For the purposes of this review, our use of the term systems theory references the body of interdisciplinary work that deals with the organization and function of complex structures in nature and human society. Key concepts in this body of theory are that both the components and the interactions among components are important in understanding behavior and that, frequently, systems are seen to be hierarchical in structure. The aim of our analysis is to bring to the attention of the plant health community several concepts from the social sciences that might help in understanding how researchers have responded to the increased expectations from funders to provide project evaluations and impact assessments. We generate a synthesis of these theories, which have not previously been used in a unified way, to explain choices in response to newly imposed goals. Although our analysis is motivated by a specific disciplinary focus on plant health, the issues we discuss are general. Thus, we hope the review is useful to a wide range of scientists, science program managers, and policymakers.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":" ","pages":"385-400"},"PeriodicalIF":9.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141299875","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Engineering a One Health Super Wheat.","authors":"Francisco M Ayala, Itzell Eurídice Hernández-Sánchez, Monika Chodasiewicz, Brande B H Wulff, Radim Svačina","doi":"10.1146/annurev-phyto-121423-042128","DOIUrl":"10.1146/annurev-phyto-121423-042128","url":null,"abstract":"<p><p>Wheat is the predominant crop worldwide, contributing approximately 20% of protein and calories to the human diet. However, the yield potential of wheat faces limitations due to pests, diseases, and abiotic stresses. Although conventional breeding has improved desirable traits, the use of modern transgenesis technologies has been limited in wheat in comparison to other crops such as maize and soybean. Recent advances in wheat gene cloning and transformation technology now enable the development of a super wheat consistent with the One Health goals of sustainability, food security, and environmental stewardship. This variety combines traits to enhance pest and disease resistance, elevate grain nutritional value, and improve resilience to climate change. In this review, we explore ways to leverage current technologies to combine and transform useful traits into wheat. We also address the requirements of breeders and legal considerations such as patents and regulatory issues.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":" ","pages":"193-215"},"PeriodicalIF":9.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141299871","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The Use of <i>Caenorhabditis elegans</i> as a Model for Plant-Parasitic Nematodes: What Have We Learned?","authors":"Mirela C Coke, Christopher A Bell, P E Urwin","doi":"10.1146/annurev-phyto-021622-113539","DOIUrl":"10.1146/annurev-phyto-021622-113539","url":null,"abstract":"<p><p>Nematoda is a diverse phylum that is estimated to contain more than a million species. More than 4,100 of these species have the ability to parasitize plants and cause agricultural losses estimated at US $173 billion annually. This has led to considerable research into their biology to minimize crop losses via control methods. At the infancy of plant-parasitic nematode molecular biology, researchers compared nematode genomes, genes, and biological processes to the model nematode species <i>Caenorhabditis elegans</i>, which is a free-living bacterial feeder<i>.</i> This well-annotated and researched model nematode assisted the molecular biology research, e.g., with genome assemblies, of plant-parasitic nematodes. However, as research into these plant parasites progressed, the necessity of relying on the free-living relative as a reference has reduced. This is partly driven by revealing the considerable divergence between the two types of nematodes both genomically and anatomically, forcing comparisons to be redundant as well as the increased quality of molecular plant nematology proposing more suitable model organisms for this clade of nematode. The major irregularity between the two types of nematodes is the unique anatomical structure and effector repertoire that plant nematodes utilize to establish parasitism, which <i>C. elegans</i> lacks, therefore reducing its value as a heterologous system to investigate parasitic processes. Despite this, <i>C. elegans</i> remains useful for investigating conserved genes via its utility as an expression system because of the current inability to transform plant-parasitic nematodes. Unfortunately, owing to the expertise that this requires, it is not a common and/or accessible tool. Furthermore, we believe that the application of <i>C. elegans</i> as an expression system for plant nematodes will be redundant once tools are established for stable reverse-genetics in these plant parasites. This will remove the restraints on molecular plant nematology and allow it to excel on par with the capabilities of <i>C. elegans</i> research.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":" ","pages":"157-172"},"PeriodicalIF":9.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141287618","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The Greening of One Health: Plants, Pathogens, and the Environment.","authors":"Karen-Beth G Scholthof","doi":"10.1146/annurev-phyto-121423-042102","DOIUrl":"10.1146/annurev-phyto-121423-042102","url":null,"abstract":"<p><p>One Health has an aspirational goal of ensuring the health of humans, animals, plants, and the environment through transdisciplinary, collaborative research. At its essence, One Health addresses the human clash with Nature by formulating strategies to repair and restore a (globally) perturbed ecosystem. A more nuanced evaluation of humankind's impact on the environment (Nature, Earth, Gaia) would fully intercalate plants, plant pathogens, and beneficial plant microbes into One Health. Here, several examples point out how plants and plant microbes are keystones of One Health. Meaningful cross-pollination between plant, animal, and human health practitioners can drive discovery and application of innovative tools to address the many complex problems within the One Health framework.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":" ","pages":"401-421"},"PeriodicalIF":9.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141299874","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Comparing Apples and Oranges: Advances in Disease Resistance Breeding of Woody Perennial Fruit Crops.","authors":"Awais Khan, Anže Švara, Nian Wang","doi":"10.1146/annurev-phyto-021622-120124","DOIUrl":"10.1146/annurev-phyto-021622-120124","url":null,"abstract":"<p><p>Apple and citrus are perennial tree fruit crops that are vital for nutritional security and agricultural economy and to achieve the Sustainable Development Goals of the United Nations. Apple scab and fire blight, along with Huanglongbing, canker, and tristeza virus, stand out as their most notorious diseases and annually destabilize fruit supply. An environmentally sound approach to managing these diseases is improving tree resistance through breeding and biotechnology. Perennial fruit tree germplasm collections are distributed globally and offer untapped potential as sources of resistance. However, long juvenility, specific pollination and flowering habits, and extensive outcrossing hinder apple and citrus breeding. Advances in breeding approaches include <i>trans</i>- and <i>cis-</i>genesis, genome editing, and rapid-cycle breeding, which, in addition to conventional crossbreeding, can all facilitate accelerated integration of resistance into elite germplasm. In addition, the global pool of available sources of resistance can be characterized by the existing genetic mapping and gene expression studies for accurate discovery of associated loci, genes, and markers to efficiently include these sources in breeding efforts. We discuss and propose a multitude of approaches to overcome the challenges of breeding for resistance in woody perennials and outline a technical path to reduce the time required for the ultimate deployment of disease-resistant cultivars.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":" ","pages":"263-287"},"PeriodicalIF":9.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141070365","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Developing Predictive Models and Early Warning Systems for Invading Pathogens: Wheat Rusts.","authors":"Christopher A Gilligan","doi":"10.1146/annurev-phyto-121423-041956","DOIUrl":"10.1146/annurev-phyto-121423-041956","url":null,"abstract":"<p><p>Innovations in aerobiological and epidemiological modeling are enabling the development of powerful techniques to infer connectivity networks for transboundary pathogens in ways that were not previously possible. The innovations are supported by improved access to historical and near real-time highly resolved weather data, multi-country disease surveillance data, and enhanced computing power. Using wheat rusts as an exemplar, we introduce a flexible modeling framework to identify characteristic pathways for long-distance spore dispersal within countries and beyond national borders. We show how the models are used for near real-time early warning systems to support smallholder farmers in East Africa and South Asia. Wheat rust pathogens are ideal exemplars because they continue to pose threats to food security, especially in regions of the world where resources for control are limited. The risks are exacerbated by the rapid appearance and spread of new pathogenic strains, prodigious spore production, and long-distance dispersal for transboundary and pandemic spread.</p>","PeriodicalId":8251,"journal":{"name":"Annual review of phytopathology","volume":" ","pages":"217-241"},"PeriodicalIF":9.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141299870","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}