Annual Review of Ecology, Evolution, and Systematics最新文献

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Biotic and Abiotic Controls on the Phanerozoic History of Marine Animal Biodiversity 海洋动物显生宙生物多样性的生物与非生物控制
IF 11.8 1区 生物学
Annual Review of Ecology, Evolution, and Systematics Pub Date : 2021-08-23 DOI: 10.1146/annurev-ecolsys-012021-035131
Andrew M. Bush, J. Payne
{"title":"Biotic and Abiotic Controls on the Phanerozoic History of Marine Animal Biodiversity","authors":"Andrew M. Bush, J. Payne","doi":"10.1146/annurev-ecolsys-012021-035131","DOIUrl":"https://doi.org/10.1146/annurev-ecolsys-012021-035131","url":null,"abstract":"During the past 541 million years, marine animals underwent three intervals of diversification (early Cambrian, Ordovician, Cretaceous–Cenozoic) separated by nondirectional fluctuation, suggesting diversity-dependent dynamics with the equilibrium diversity shifting through time. Changes in factors such as shallow-marine habitat area and climate appear to have modulated the nondirectional fluctuations. Directional increases in diversity are best explained by evolutionary innovations in marine animals and primary producers coupled with stepwise increases in the availability of food and oxygen. Increasing intensity of biotic interactions such as predation and disturbance may have led to positive feedbacks on diversification as ecosystems became more complex. Important areas for further research include improving the geographic coverage and temporal resolution of paleontological data sets, as well as deepening our understanding of Earth system evolution and the physiological and ecological traits that modulated organismal responses to environmental change. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":7988,"journal":{"name":"Annual Review of Ecology, Evolution, and Systematics","volume":"27 1","pages":""},"PeriodicalIF":11.8,"publicationDate":"2021-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90092706","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
Are Terrestrial Biological Invasions Different in the Tropics? 热带地区的陆地生物入侵是否不同?
IF 11.8 1区 生物学
Annual Review of Ecology, Evolution, and Systematics Pub Date : 2021-08-23 DOI: 10.1146/annurev-ecolsys-012021-095454
K. Chong, R. Corlett, Martin A. Nuñez, Jing Hua Chiu, F. Courchamp, W. Dawson, Sara E. Kuebbing, Andrew M. Liebhold, M. Padmanaba, Lara Souza, K. Andersen, S. Fei, B. Lee, S. Lum, M. Luskin, K. M. Ngo, D. Wardle
{"title":"Are Terrestrial Biological Invasions Different in the Tropics?","authors":"K. Chong, R. Corlett, Martin A. Nuñez, Jing Hua Chiu, F. Courchamp, W. Dawson, Sara E. Kuebbing, Andrew M. Liebhold, M. Padmanaba, Lara Souza, K. Andersen, S. Fei, B. Lee, S. Lum, M. Luskin, K. M. Ngo, D. Wardle","doi":"10.1146/annurev-ecolsys-012021-095454","DOIUrl":"https://doi.org/10.1146/annurev-ecolsys-012021-095454","url":null,"abstract":"Most biological invasion literature—including syntheses and meta-analyses and the resulting theory—is reported from temperate regions, drawing only minimally from the tropics except for some island systems. The lack of attention to invasions in the tropics results from and reinforces the assumption that tropical ecosystems, and especially the continental tropics, are more resistant to invasions. We have critically assessed biological invasions in the tropics and compared them with temperate regions, finding relatively weak evidence that tropical and temperate regions differ in their invasibility and in the traits that determine invader success and impacts. Propagule pressure and the traits that promote adaptation to disturbances (e.g., high fecundity or fast growth rates) are generally favorable to invasions in both tropical and temperate regions. We emphasize the urgent need for greater investment and regional cooperation in the study, prevention, and management of biological invasions in the tropics. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":7988,"journal":{"name":"Annual Review of Ecology, Evolution, and Systematics","volume":"41 1","pages":""},"PeriodicalIF":11.8,"publicationDate":"2021-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81448841","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 16
Multispecies Coalescent: Theory and Applications in Phylogenetics 多物种聚结:系统发育理论与应用
IF 11.8 1区 生物学
Annual Review of Ecology, Evolution, and Systematics Pub Date : 2021-08-20 DOI: 10.1146/annurev-ecolsys-012121-095340
S. Mirarab, L. Nakhleh, T. Warnow
{"title":"Multispecies Coalescent: Theory and Applications in Phylogenetics","authors":"S. Mirarab, L. Nakhleh, T. Warnow","doi":"10.1146/annurev-ecolsys-012121-095340","DOIUrl":"https://doi.org/10.1146/annurev-ecolsys-012121-095340","url":null,"abstract":"Species tree estimation is a basic part of many biological research projects, ranging from answering basic evolutionary questions (e.g., how did a group of species adapt to their environments?) to addressing questions in functional biology. Yet, species tree estimation is very challenging, due to processes such as incomplete lineage sorting, gene duplication and loss, horizontal gene transfer, and hybridization, which can make gene trees differ from each other and from the overall evolutionary history of the species. Over the last 10–20 years, there has been tremendous growth in methods and mathematical theory for estimating species trees and phylogenetic networks, and some of these methods are now in wide use. In this survey, we provide an overview of the current state of the art, identify the limitations of existing methods and theory, and propose additional research problems and directions. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":7988,"journal":{"name":"Annual Review of Ecology, Evolution, and Systematics","volume":"38 1","pages":""},"PeriodicalIF":11.8,"publicationDate":"2021-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86664187","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 20
A Genetic Perspective on Cetacean Evolution 鲸类动物进化的遗传学观点
IF 11.8 1区 生物学
Annual Review of Ecology, Evolution, and Systematics Pub Date : 2021-08-20 DOI: 10.1146/annurev-ecolsys-012021-105003
A. Cabrera, M. Bérubé, Xênia M Lopes, M. Louis, T. Oosting, A. Rey-Iglesia, Vania E. Rivera-León, D. Székely, E. Lorenzen, P. Palsbøll
{"title":"A Genetic Perspective on Cetacean Evolution","authors":"A. Cabrera, M. Bérubé, Xênia M Lopes, M. Louis, T. Oosting, A. Rey-Iglesia, Vania E. Rivera-León, D. Székely, E. Lorenzen, P. Palsbøll","doi":"10.1146/annurev-ecolsys-012021-105003","DOIUrl":"https://doi.org/10.1146/annurev-ecolsys-012021-105003","url":null,"abstract":"Studies of cetacean evolution using genetics and other biomolecules have come a long way—from the use of allozymes and short sequences of mitochondrial or nuclear DNA to the assembly of full nuclear genomes and characterization of proteins and lipids. Cetacean research has also advanced from using only contemporary samples to analyzing samples dating back thousands of years, and to retrieving data from indirect environmental sources, including water or sediments. Combined, these studies have profoundly deepened our understanding of the origin of cetaceans; their adaptation and speciation processes; and of the past population change, migration, and admixture events that gave rise to the diversity of cetaceans found today. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":7988,"journal":{"name":"Annual Review of Ecology, Evolution, and Systematics","volume":"64 1","pages":""},"PeriodicalIF":11.8,"publicationDate":"2021-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"85569485","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
The Invisible Hand of the Periodic Table: How Micronutrients Shape Ecology 元素周期表的无形之手:微量元素如何塑造生态
IF 11.8 1区 生物学
Annual Review of Ecology, Evolution, and Systematics Pub Date : 2021-08-20 DOI: 10.1146/annurev-ecolsys-012021-090118
M. Kaspari
{"title":"The Invisible Hand of the Periodic Table: How Micronutrients Shape Ecology","authors":"M. Kaspari","doi":"10.1146/annurev-ecolsys-012021-090118","DOIUrl":"https://doi.org/10.1146/annurev-ecolsys-012021-090118","url":null,"abstract":"Beyond the better-studied carbohydrates and the macronutrients nitrogen and phosphorus, a remaining 20 or so elements are essential for life and have distinct geographical distributions, making them of keen interest to ecologists. Here, I provide a framework for understanding how shortfalls in micronutrients like iodine, copper, and zinc can regulate individual fitness, abundance, and ecosystem function. With a special focus on sodium, I show how simple experiments manipulating biogeochemistry can reveal why many of the variables that ecologists study vary so dramatically from place to place. I conclude with a discussion of how the Anthropocene's changing temperature, precipitation, and atmospheric CO2 levels are contributing to nutrient dilution (decreases in the nutrient quality at the base of food webs). Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":7988,"journal":{"name":"Annual Review of Ecology, Evolution, and Systematics","volume":"2014 1","pages":""},"PeriodicalIF":11.8,"publicationDate":"2021-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"73730243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 34
Demographic Consequences of Phenological Shifts in Response to Climate Change 气候变化对物候变化的人口影响
IF 11.8 1区 生物学
Annual Review of Ecology, Evolution, and Systematics Pub Date : 2021-08-20 DOI: 10.1146/annurev-ecolsys-011921-032939
A. Iler, Paul J. CaraDonna, J. Forrest, E. Post
{"title":"Demographic Consequences of Phenological Shifts in Response to Climate Change","authors":"A. Iler, Paul J. CaraDonna, J. Forrest, E. Post","doi":"10.1146/annurev-ecolsys-011921-032939","DOIUrl":"https://doi.org/10.1146/annurev-ecolsys-011921-032939","url":null,"abstract":"When a phenological shift affects a demographic vital rate such as survival or reproduction, the altered vital rate may or may not have population-level consequences. We review the evidence that climate change affects populations by shifting species’ phenologies, emphasizing the importance of demographic life-history theory. We find many examples of phenological shifts having both positive and negative consequences for vital rates. Yet, few studies link phenological shifts to changes in vital rates known to drive population dynamics, especially in plants. When this link is made, results are largely consistent with life-history theory: Phenological shifts have population-level consequences when they affect survival in longer-lived organisms and reproduction in shorter-lived organisms. However, there are just as many cases in which demographic mechanisms buffer population growth from phenologically induced changes in vital rates. We provide recommendations for future research aiming to understand the complex relationships among climate, phenology, and demography, which will help to elucidate the extent to which phenological shifts actually alter population persistence. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":7988,"journal":{"name":"Annual Review of Ecology, Evolution, and Systematics","volume":"15 1","pages":""},"PeriodicalIF":11.8,"publicationDate":"2021-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88417216","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 51
Plant Communication 工厂沟通
IF 11.8 1区 生物学
Annual Review of Ecology, Evolution, and Systematics Pub Date : 2021-08-10 DOI: 10.1146/annurev-ecolsys-010421-020045
R. Karban
{"title":"Plant Communication","authors":"R. Karban","doi":"10.1146/annurev-ecolsys-010421-020045","DOIUrl":"https://doi.org/10.1146/annurev-ecolsys-010421-020045","url":null,"abstract":"Communication occurs when a sender emits a cue perceived by a receiver that changes the receiver's behavior. Plants perceive information regarding light, water, other nutrients, touch, herbivores, pathogens, mycorrhizae, and nitrogen-fixing bacteria. Plants also emit cues perceived by other plants, beneficial microbes, herbivores, enemies of herbivores, pollinators, and seed dispersers. Individuals responding to light cues experienced increased fitness. Evidence for benefits of responding to cues involving herbivores and pathogens is more limited. The benefits of emitting cues are also less clear, particularly for plant–plant communication. Reliance on multiple or dosage-dependent cues can reduce inappropriate responses, and plants often remember past cues. Plants have multiple needs and prioritize conflicting cues such that the risk of abiotic stress is treated as greater than that of shading, which is in turn treated as greater than that of consumption. Plants can distinguish self from nonself and kin from strangers. They can identify the species of competitor or consumer and respond appropriately. Cues involving mutualists often contain highly specific information. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":7988,"journal":{"name":"Annual Review of Ecology, Evolution, and Systematics","volume":"1 1","pages":""},"PeriodicalIF":11.8,"publicationDate":"2021-08-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76155684","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 19
The Ecological Importance of Allelopathy 化感作用的生态学意义
IF 11.8 1区 生物学
Annual Review of Ecology, Evolution, and Systematics Pub Date : 2021-08-10 DOI: 10.1146/annurev-ecolsys-051120-030619
J. Hierro, R. Callaway
{"title":"The Ecological Importance of Allelopathy","authors":"J. Hierro, R. Callaway","doi":"10.1146/annurev-ecolsys-051120-030619","DOIUrl":"https://doi.org/10.1146/annurev-ecolsys-051120-030619","url":null,"abstract":"Allelopathy (i.e., chemical interaction among species) was originally conceived as inclusive of positive and negative effects of plants on other plants, and we adopt this view. Most studies of allelopathy have been phenomenological, but we focus on studies that have explored the ecological significance of this interaction. The literature suggests that studies of allelopathy have been particularly important for three foci in ecology: species distribution, conditionality of interactions, and maintenance of species diversity. There is evidence that allelopathy influences local distributions of plant species around the world. Allelopathic conditionality appears to arise through coevolution, and this is a mechanism for plant invasions. Finally, allelopathy promotes species coexistence via intransitive competition, modifications of direct interactions, and (co)evolution. Recent advances additionally suggest that coexistence might be favored through biochemical recognition. The preponderance of phenomenological studies notwithstanding, allelopathy has broad ecological consequences. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":7988,"journal":{"name":"Annual Review of Ecology, Evolution, and Systematics","volume":"40 1","pages":""},"PeriodicalIF":11.8,"publicationDate":"2021-08-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90079660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 36
Ancient Invaders: How Paleogenetic Tools Help to Identify and Understand Biological Invasions of the Past 古代入侵者:古遗传学工具如何帮助识别和理解过去的生物入侵
IF 11.8 1区 生物学
Annual Review of Ecology, Evolution, and Systematics Pub Date : 2021-08-10 DOI: 10.1146/annurev-ecolsys-012021-100938
M. Knapp, Catherine J. Collins, E. Matisoo-Smith
{"title":"Ancient Invaders: How Paleogenetic Tools Help to Identify and Understand Biological Invasions of the Past","authors":"M. Knapp, Catherine J. Collins, E. Matisoo-Smith","doi":"10.1146/annurev-ecolsys-012021-100938","DOIUrl":"https://doi.org/10.1146/annurev-ecolsys-012021-100938","url":null,"abstract":"Past biological invasions have contributed to shaping our present day biodiversity. For many island ecosystems, they are the only source of terrestrial life. At the same time, biological invasions, in particular when caused by human activity, are a major concern for the conservation of native species. It is therefore essential to understand the drivers of biological invasions as well as the role invasions have played in different ecosystems. Molecular tools have provided valuable data to reconstruct biological invasions, their drivers, and their impacts. Recent technological developments have further increased the potential of molecular tools to track past shifts in biodiversity. Here, we provide a perspective on how such molecular tools have influenced our understanding of past biological invasions and discuss how they may further help to shape our understanding and management of biological invasions. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":7988,"journal":{"name":"Annual Review of Ecology, Evolution, and Systematics","volume":"7 1","pages":""},"PeriodicalIF":11.8,"publicationDate":"2021-08-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88015440","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
The Biology of Chernobyl 切尔诺贝利的生物学
IF 11.8 1区 生物学
Annual Review of Ecology, Evolution, and Systematics Pub Date : 2021-08-10 DOI: 10.1146/annurev-ecolsys-110218-024827
Timothy A Mousseau
{"title":"The Biology of Chernobyl","authors":"Timothy A Mousseau","doi":"10.1146/annurev-ecolsys-110218-024827","DOIUrl":"https://doi.org/10.1146/annurev-ecolsys-110218-024827","url":null,"abstract":"Environmental disasters offer the unique opportunity for landscape-scale ecological and evolutionary studies that are not possible in the laboratory or small experimental plots. The nuclear accident at Chernobyl (1986) allows for rigorous analyses of radiation effects on individuals and populations at an ecosystem scale. Here, the current state of knowledge related to populations within the Chernobyl region of Ukraine and Belarus following the largest civil nuclear accident in history is reviewed. There is now a significant literature that provides contrasting and occasionally conflicting views of the state of animals and how they are affected by this mutagenic stressor. Studies of genetic and physiological effects have largely suggested significant injuries to individuals inhabiting the more radioactive areas of the Chernobyl region. Most population censuses for most species suggest that abundances are reduced in the more radioactive areas. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":7988,"journal":{"name":"Annual Review of Ecology, Evolution, and Systematics","volume":"1 1","pages":""},"PeriodicalIF":11.8,"publicationDate":"2021-08-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"87039748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
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