Molecular pathology : MP最新文献

{"title":"Demystified. Human endogenous retroviruses.","authors":"P N Nelson, P R Carnegie, J Martin, H Davari Ejtehadi, P Hooley, D Roden, S Rowland-Jones, P Warren, J Astley, P G Murray","doi":"10.1136/mp.56.1.11","DOIUrl":"10.1136/mp.56.1.11","url":null,"abstract":"<p><p>Human endogenous retroviruses (HERVs) are a family of viruses within our genome with similarities to present day exogenous retroviruses. HERVs have been inherited by successive generations and it is possible that some have conferred biological benefits. However, several HERVs have been implicated in certain cancers and autoimmune diseases. This article demystifies these retroviruses by providing an insight into HERVs, their means of classification, and a synopsis of HERVs implicated in cancer and autoimmunity. Furthermore, the biological roles of HERVs are explored.</p>","PeriodicalId":79512,"journal":{"name":"Molecular pathology : MP","volume":"56 1","pages":"11-8"},"PeriodicalIF":0.0,"publicationDate":"2003-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1187282/pdf/mp56000011.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"22221902","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Pseudobacteraemia in a patient with neutropenic fever caused by a novel paenibacillus species: Paenibacillus hongkongensis sp. nov.","authors":"J L L Teng,&nbsp;P C Y Woo,&nbsp;K W Leung,&nbsp;S K P Lau,&nbsp;M K M Wong,&nbsp;K Y Yuen","doi":"10.1136/mp.56.1.29","DOIUrl":"https://doi.org/10.1136/mp.56.1.29","url":null,"abstract":"<p><strong>Aims: </strong>To characterise a strain of Gram negative aerobic straight or slightly curved rods (HKU3) isolated from the blood culture of a 9 year old Chinese boy with neutropenic fever and pseudobacteraemia.</p><p><strong>Methods: </strong>The isolate was phenotypically investigated by standard biochemical methods using conventional biochemical tests, scanning electron microscopy, and transmission electron microscopy. Genotypically, the 16S rRNA gene of the bacterium was amplified by the polymerase chain reaction (PCR) and sequenced. The sequence of the PCR product was compared with known 16S rRNA gene sequences in the Genbank by multiple sequence alignment. The G + C content was determined by thermal denaturation. A phylogenetic tree was constructed by the PileUp method.</p><p><strong>Results: </strong>The cells of the bacterial strain were aerobic, sporulating, Gram negative straight or slight curved rods. The bacterium grew on horse blood agar as non-haemolytic, grey colonies of 1 mm in diameter after 24 hours of incubation at 37 degrees C in ambient air. No enhancement of growth was seen in 5% CO(2). It grew at 50 degrees C as pinpoint colonies after 72 hours of incubation, but did not grow at 65 degrees C or on MacConkey agar. It was non-motile. It produced catalase (weakly positive) and cytochrome oxidase. It reduced nitrate, produced beta galactosidase, hydrolysed esculin, and utilised sodium acetate. A scanning electron micrograph of the bacterium showed straight or slightly curved rods. A transmission electron micrograph of the cell wall of the bacterium revealed multiple electron dense layers, including the outer membrane, middle murein layer, and inner cytoplasmic membrane, compatible with its Gram smear appearance. 16S rRNA gene sequencing showed that there were 7.7%, 8.0%, 8.2%, and 8.6% differences between the 16S rRNA gene sequence of the bacterium and those of Paenibacillus macerans, Paenibacillus borealis, Bacillus ehimensis, and Paenibacillus amylolyticus, respectively. The mean (SD) G + C content of the bacterium was 47.6 (2.1) mol%. Phylogenetically, it belongs to the genus paenibacillus (previously called group 3 bacillus).</p><p><strong>Conclusions: </strong>A bacterium that exhibited phenotypic and genotypic characteristics that are very different from closely related members of paenibacillus was the cause of pseudobacteraemia in a patient with neutropenic fever. A new species, Paenibacillus hongkongensis sp. nov. is proposed, for which HKU3 is the type strain.</p>","PeriodicalId":79512,"journal":{"name":"Molecular pathology : MP","volume":"56 1","pages":"29-35"},"PeriodicalIF":0.0,"publicationDate":"2003-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1136/mp.56.1.29","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"22221835","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Helicobacter pylori genotyping in gastric adenocarcinoma and MALT lymphoma by multiplex PCR analyses of paraffin wax embedded tissues.","authors":"C I Koehler,&nbsp;M B Mues,&nbsp;H P Dienes,&nbsp;J Kriegsmann,&nbsp;P Schirmacher,&nbsp;M Odenthal","doi":"10.1136/mp.56.1.36","DOIUrl":"https://doi.org/10.1136/mp.56.1.36","url":null,"abstract":"<p><strong>Background: </strong>Gastric infection with Helicobacter pylori is the major cause of chronic active gastritis and is associated with the pathogenesis of peptic ulcer and gastric carcinoma. Gastric mucosal damage involves both host and H pylori dependent factors, such as the presence of the cag pathogenicity island and allelic variations of the vacA and iceA genes.</p><p><strong>Aims: </strong>To evaluate the association of these virulence factors with the development of gastric malignancies, a retrospective study was performed on archived tissue routinely obtained for diagnostic histopathology.</p><p><strong>Methods: </strong>DNA was extracted from formalin fixed, paraffin wax embedded gastric tissue sections of 93 patients with chronic active gastritis (n = 39), adenocarcinoma (n = 28), or mucosa associated lymphoid tissue (MALT) lymphoma (n = 24). The extracted DNA was used to perform a polymerase chain reaction based, simultaneous analysis of the following: (1) cagA status, (2) allelic variation of the iceA genes (iceA1, iceA2), allelic variation of the signal peptide (s1a, s1b, s2) and the midregion (m1, m1a, m2) of the vacA gene.</p><p><strong>Results: </strong>The iceA1 gene showed a 3.6 fold and the vacA s1a variant a 4.2 fold higher prevalence in gastric adenocarcinoma than in gastritis. The combined presence of both the vacA s1a and iceA1 genes had a 5.6 fold higher frequency in adenocarcinoma. The vacA m2 allele was the predominant subtype in MALT lymphoma and the combination of the vacA m2 subtypes with the vacA s1 and the iceA1 variants occurred in MALT lymphoma nearly five times more often than in chronic active gastritis.</p><p><strong>Conclusions: </strong>Certain H pylori subtype combinations possess a differentiating and predictive value for the development of gastric adenocarcinoma and MALT lymphoma.</p>","PeriodicalId":79512,"journal":{"name":"Molecular pathology : MP","volume":"56 1","pages":"36-42"},"PeriodicalIF":0.0,"publicationDate":"2003-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1136/mp.56.1.36","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"22221836","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Accurate molecular detection of melanoma nodal metastases: an assessment of multimarker assay specificity, sensitivity, and detection rate.","authors":"V Davids,&nbsp;S H Kidson,&nbsp;G S Hanekom","doi":"10.1136/mp.56.1.43","DOIUrl":"https://doi.org/10.1136/mp.56.1.43","url":null,"abstract":"<p><strong>Background: </strong>The application of lymphoscintigraphy followed by sentinel lymph node (SN) biopsy to patients with primary melanoma has revolutionised the ability to identify accurately, yet conservatively, those patients who harbour occult nodal metastases. The molecular detection of SN micrometastases facilitates the cost effective analysis of the entire SN using multiple markers. Currently, a lack of marker specificity is the main barrier preventing the molecular evaluation of SN tissue from becoming clinically applicable.</p><p><strong>Aims: </strong>To develop a reproducible multimarker reverse transcription-polymerase chain reaction (RT-PCR) assay, with the emphasis on achieving high specificity for the accurate detection of melanoma metastases in nodal tissue.</p><p><strong>Methods: </strong>Three pigment cell specific (PCS) markers-tyrosinase, Pmel-17, and MART-1-and one cancer testis antigen (CTA)-MAGE-3-were selected for use in a multimarker RT-PCR assay. The conditions for this assay were optimised.</p><p><strong>Results: </strong>High specificity was achievable for each marker by optimising the PCR cycle number such that unwanted transcripts (that is, illegitimate transcripts and/or specific transcripts from other low abundance nodal cell types) remained undetectable in appropriate controls (normal visceral nodes). Tyrosinase was 100% specific at 40 PCR cycles, MAGE-3 and MART-1 at 35 PCR cycles, and Pmel-17 at 30 PCR cycles. Tyrosinase proved to be the most sensitive marker, detecting 10 melanoma cells in 0.1 g of nodal tissue.</p><p><strong>Conclusions: </strong>Excellent reproducibility of the entire nodal processing and RT-PCR protocol for the detection of very low numbers of melanoma cells in nodal tissue was shown, although there is a risk of false positives using the PCS markers alone, because of an approximate 4-8.5% incidence rate of nodal nevi in melanoma draining SNs (these nevi being absent in all other normal nodes). MAGE-3 was shown to be the only marker that is not expressed by melanocytes. However, because not all melanomas express MAGE-3, it is recommended that more emphasis should be placed on the development of a panel of CTA markers to ensure a zero false positive rate and to provide optimum detection.</p>","PeriodicalId":79512,"journal":{"name":"Molecular pathology : MP","volume":"56 1","pages":"43-51"},"PeriodicalIF":0.0,"publicationDate":"2003-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1136/mp.56.1.43","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"22221837","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Effect of Helicobacter pylori on apoptosis and apoptosis related genes in gastric cancer cells.","authors":"Y Yang, C S Deng, J Z Peng, B C-Y Wong, S K Lam, H H-X Xia","doi":"10.1136/mp.56.1.19","DOIUrl":"10.1136/mp.56.1.19","url":null,"abstract":"<p><strong>Background/aims: </strong>Helicobacter pylori induces the apoptosis of gastric epithelial cells in vivo and in vitro. However, the molecular mechanism has not been clarified. The aim of this study was to investigate the effect of H pylori on the apoptosis of gastric epithelial cells and the expression of apoptosis related genes in vitro.</p><p><strong>Methods: </strong>Human gastric adenocarcinoma SGC-7901 cells were co-cultured with a cytotoxic H pylori strain, NCTC 11637, at various densities ranging from 3.2 x 10(4) to 1.0 x 10(8) colony forming units (CFU)/ml for 48 hours. Apoptosis in gastric cells was determined by transmission electron microscopy, Hoechst 33258 fluorochrome staining, and flow cytometry. The expression of apoptosis related proteins, Bcl-2, Bax, and c-Myc, was measured by an immunohistochemical method, and c-Myc mRNA expression was determined by the reverse transcription-polymerase chain reaction.</p><p><strong>Results: </strong>Helicobacter pylori induces morphological changes typical of apoptosis. Both fluorochrome staining and flow cytometry showed that the apoptotic index began to increase when H pylori were at a density of > 1.6 x 10(4) CFU/ml, and in a density dependent manner (p < 0.01; one way ANOVA). The expression of the Bax and c-Myc proteins and of c-Myc mRNA was increased, whereas Bcl-2 expression was decreased after co-culture for 48 hours.</p><p><strong>Conclusions: </strong>Helicobacter pylori induced apoptosis in gastric epithelial cells is mediated by altered expression of the products of the Bcl-2, Bax, and c-Myc genes.</p>","PeriodicalId":79512,"journal":{"name":"Molecular pathology : MP","volume":"56 1","pages":"19-24"},"PeriodicalIF":0.0,"publicationDate":"2003-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1187283/pdf/mp56000019.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"22221903","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Fetal DNA may spark Sjögren’s syndrome","authors":"","doi":"10.1136/mp.56.1.64-a","DOIUrl":"https://doi.org/10.1136/mp.56.1.64-a","url":null,"abstract":"Distinct histological forms of rheumatoid arthritis (RA) may respond differently to treatment as they have different patterns of soluble adhesion factors and vascular endothelial growth factor (VEGF), Polish researchers claim. Their investigations centred on synovial and serum samples from 42 patients with RA and 32 controls with osteoarthritis (OA). Serum concentrations of soluble intercellular adhesion molecule 1 (sICAM-1), soluble vascular adhesion molecule 1 (sVCAM-1), soluble E-selectin (sE-selectin), and VEGF were significantly higher in patients with RA than OA. All except sE-selectin were much higher for patients with RA showing follicular synovitis (16) compared with patients showing diffuse synovitis (24) and patients with OA. They were also linked with clinical markers for RA, including erythrocyte sedimentation rate, C reactive protein, number of swollen joints, and x ray evidence indicating more severe disease. In follicular RA the synovium contained circular aggregates of lymphocytes around a central core and associated with new capillaries. In diffuse synovitis and OA it showed a more uniform spread of mononuclear cells throughout the tissue. Synovial tissue was taken from patients during hip or knee operations. Serum concentrations of adhesion factors and VEGF were measured by ELISA. Distinct types of synovitis seem to be found with different patterns of cytokines in the synovium and cytokines and metalloproteinases in serum. Macrophages and fibroblasts migrate to the synovium under the influence of adhesion molecules and increased vascularisation promoted by VEGF, sVCAM, and sE-selectin. Once there their cytokines and metalloproteinases mediate tissue destruction, maybe controlled by lymphocytes.","PeriodicalId":79512,"journal":{"name":"Molecular pathology : MP","volume":"56 1","pages":"64 - 64"},"PeriodicalIF":0.0,"publicationDate":"2003-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1136/mp.56.1.64-a","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"64433429","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Molecular determination of carriage of the mecA locus in coagulase negative staphylococci in screening swabs from patients in an intensive care unit.","authors":"J E Moore,&nbsp;B C Millar,&nbsp;M Crowe,&nbsp;J Buchanan,&nbsp;M Watabe,&nbsp;P G Murphy,&nbsp;X Yongmin,&nbsp;K Milligan,&nbsp;A McClelland","doi":"10.1136/mp.56.1.63","DOIUrl":"https://doi.org/10.1136/mp.56.1.63","url":null,"abstract":"Staphylococci are important nosocomial pathogens, which are easily transmitted from patient to patient, and there is concern over the recent emergence of antibiotic resistance to the β lactam class of antimicrobial drugs, particularly within methicillin resistant Staphylococcus aureus (MRSA). Coagulase negative staphylococci, although relatively less pathogenic than S aureus, are important pathogens, particularly in immunocompromised or immunosuppressed patients, where they can cause line associated bacteraemia and infections of prosthetic devices, such as heart valves. Recently, several studies have suggested that S aureus may acquire the mecA locus through the horizontal gene transfer of this locus from methicillin resistant (mecA +ve) coagulase negative staphylococci to methicillin sensitive S aureus , thus resulting in the emergence of MRSA phenotypes.1,2 Therefore, the aim of our study was to determine the incidence of carriage of the mecA locus in coagulase negative staphylococci isolated from screening swabs from an intensive care unit (ICU) in a large acute teaching hospital.\u0000\u0000Seventy five patients within the ICU at Belfast City Hospital …","PeriodicalId":79512,"journal":{"name":"Molecular pathology : MP","volume":"56 1","pages":"63"},"PeriodicalIF":0.0,"publicationDate":"2003-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1136/mp.56.1.63","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"22221840","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Salivary gland expression of transforming growth factor beta isoforms in Sjogren's syndrome and benign lymphoepithelial lesions.","authors":"G I Mason, J Hamburger, S Bowman, J B Matthews","doi":"10.1136/mp.56.1.52","DOIUrl":"10.1136/mp.56.1.52","url":null,"abstract":"<p><strong>Aim: </strong>Transforming growth factor beta (TGF-beta) is involved in the control of autoimmune reactions, cell proliferation, and the accumulation of lymphocytes within organs. The aim of this study was to determine the expression of TGF-beta in salivary glands from patients with primary Sjogren's syndrome (SS) and benign lymphoepithelial lesions (BLEL) with emphasis on ductal epithelium.</p><p><strong>Methods: </strong>Immunoperoxidase staining for TGF-beta isoforms and Ki67 antigen was performed on formalin fixed sections of labial glands from patients with primary SS (n = 15) and controls (n = 5) and parotid glands reported as BLEL (n = 5) or normal (n = 5). Ductal expression of TGF-beta was quantified by absorbance measurements using image analysis. The specificity of staining was confirmed by peptide blocking studies.</p><p><strong>Results: </strong>All TGF-beta isoforms were detected within the cytoplasm of most lymphocytes, endothelial cells, and ducts in all specimens. Acinar expression was variable and weaker than that seen in ducts. Absorbance measurements revealed that the expression of all isoforms was greater in ducts within primary SS glands than in control glands. Ductal expression in control parotid glands was greater than that seen in BLEL glands, irrespective of the presence of adjacent lymphoid infiltrates. Comparisons between control specimens showed that ductal expression of all isoforms was highest in parotid glands, whereas no differences were detected between primary SS and BLEL glands. Ki67 positive lymphocytes and duct cells were mainly restricted to pathological specimens, with BLEL glands containing larger populations of positive cells than primary SS glands.</p><p><strong>Conclusion: </strong>These results demonstrate complex and variable changes in ductal expression of TGF-beta in primary SS and BLEL, which may be important in the control of lymphoid infiltration and the proliferation of lymphocytes and ductal epithelium.</p>","PeriodicalId":79512,"journal":{"name":"Molecular pathology : MP","volume":"56 1","pages":"52-9"},"PeriodicalIF":0.0,"publicationDate":"2003-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1187290/pdf/mp56000052.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"22221838","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Molecular aspects of type 1 diabetes.","authors":"M A Kelly,&nbsp;M L Rayner,&nbsp;C H Mijovic,&nbsp;A H Barnett","doi":"10.1136/mp.56.1.1","DOIUrl":"https://doi.org/10.1136/mp.56.1.1","url":null,"abstract":"<p><p>Type 1 diabetes is a T cell mediated autoimmune disease, characterised by the selective destruction of pancreatic beta cells, and susceptibility is determined by a combination of genetic and environmental factors. The environmental agents implicated include viruses and dietary factors, although none has yet been shown to be directly responsible for triggering beta cell autoimmunity. The genetic factors that influence disease risk have been subjected to more intensive study and two gene regions of major importance have been identified: the human leucocyte antigen locus and the insulin gene. This review will focus on the mechanisms by which these genes might influence the risk of developing type 1 diabetes.</p>","PeriodicalId":79512,"journal":{"name":"Molecular pathology : MP","volume":"56 1","pages":"1-10"},"PeriodicalIF":0.0,"publicationDate":"2003-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1136/mp.56.1.1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"22221901","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Adhesion factors and endothelial growth factor vary with RA type","authors":"","doi":"10.1136/mp.56.1.64","DOIUrl":"https://doi.org/10.1136/mp.56.1.64","url":null,"abstract":"","PeriodicalId":79512,"journal":{"name":"Molecular pathology : MP","volume":"56 1","pages":"64 - 64"},"PeriodicalIF":0.0,"publicationDate":"2003-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1136/mp.56.1.64","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"64433356","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}