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Cis-regulatory modules prediction in spliced genes associated with carcass and meat traits of Nelore cattle 内洛雷牛胴体和肉质性状相关剪接基因的顺式调控模块预测
Animal Gene Pub Date : 2023-03-01 DOI: 10.1016/j.angen.2022.200142
Thaís Cristina Ferreira Dos Santos , Evandro Neves Silva , Larissa Fernanda Simielli Fonseca , Lucia Galvão De Albuquerque , Danielly Beraldo Dos Santos Silva
{"title":"Cis-regulatory modules prediction in spliced genes associated with carcass and meat traits of Nelore cattle","authors":"Thaís Cristina Ferreira Dos Santos ,&nbsp;Evandro Neves Silva ,&nbsp;Larissa Fernanda Simielli Fonseca ,&nbsp;Lucia Galvão De Albuquerque ,&nbsp;Danielly Beraldo Dos Santos Silva","doi":"10.1016/j.angen.2022.200142","DOIUrl":"10.1016/j.angen.2022.200142","url":null,"abstract":"<div><p><span><span>The cis-regulatory modules are non-coding DNA regions responsible for controlling gene transcription and being involved in the anatomical and </span>embryonic development<span><span> of animal species. This study aimed to perform a prediction analysis of cis-regulatory modules in spliced genes associated, commonly, with ribeye area (REA) and intramuscular fat (IF) of </span>Nelore cattle. For this, JuncBASE v.0.9 (Junction-Based Analysis of Splicing Events) software was used to identify and classify exon-centered alternative splicing events in the group of animals selected for REA and IF. The prediction of transcription factors and cis-regulatory modules was performed for the genes found using iRegulon v.1.3. The prediction analysis exhibited 45 cis-regulatory modules, of which module 11 had the highest number (</span></span><em>N</em> = 9) of binding sites shared commonly by 11 spliced genes and five transcription factors from the <em>MEF2</em><span><span> family. These modules could potentially regulate spliced exons and, thus, contribute to the production of isoforms, which may be involved in essential pathways and </span>biological processes<span> involved in the evaluated animals muscular development and lipid metabolism.</span></span></p></div>","PeriodicalId":7893,"journal":{"name":"Animal Gene","volume":"27 ","pages":"Article 200142"},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46229261","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The relationship between egg production, reproductive hormones, and the GDF9 gene in three different chicken strains 三个不同品系鸡产蛋量、生殖激素与GDF9基因的关系
Animal Gene Pub Date : 2023-03-01 DOI: 10.1016/j.angen.2023.200147
W.S. Habashy , K. Adomako
{"title":"The relationship between egg production, reproductive hormones, and the GDF9 gene in three different chicken strains","authors":"W.S. Habashy ,&nbsp;K. Adomako","doi":"10.1016/j.angen.2023.200147","DOIUrl":"10.1016/j.angen.2023.200147","url":null,"abstract":"<div><p>Egg production is the most important commercial attribute of layer hens since it has a direct impact on the efficiency of the poultry industry. This research aimed to study the age at first egg (AFE), egg number (EN), egg quality, and some plasma hormones<span> within the period from the start of laying eggs until day 90 of production in three strains of laying hens<span> (Lohman Brown (LB), Golden Sabahia (GS)) and White Leghorn<span> (WL) as the reference breed for egg production. In addition, a time series expression profile of growth differentiation factor<span> 9 (GDF9) gene was investigated to get a better understanding of the genetic basis of egg production. The LB laying hens recorded the highest improved estimates of egg production and egg quality traits. Further, GDF9 was highly expressed in LB tissues (magnum and isthmus) compared to WL except in the uterus. These results suggest that there is a direct relationship between number of eggs produced, quality of eggs and the expression level of the GDF9 gene in the LB strains. Besides, the LB strain is superior with candidate productive traits, therefore they can be used as proven ancestors to improve laying hens.</span></span></span></span></p></div>","PeriodicalId":7893,"journal":{"name":"Animal Gene","volume":"27 ","pages":"Article 200147"},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44216905","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Single Nucleotide Polymorphisms in Insulin-like Growth Factor 2 (IGF2) gene and their associations with body weight and growth rate traits in indigenous guinea fowls (Numida meleagris) of northern Ghana 加纳北部土生几内亚鸡(Numida meleagris)胰岛素样生长因子2 (IGF2)基因单核苷酸多态性及其与体重和生长速率性状的关系
Animal Gene Pub Date : 2023-03-01 DOI: 10.1016/j.angen.2022.200139
Kurukulasuriya Mariesta Jayaroshini Ahiagbe , Christopher Adenyo , Miho Inoue-Murayama , Esinam Nancy Amuzu-Aweh , Patrick Bonney , Boniface Baboreka Kayang
{"title":"Single Nucleotide Polymorphisms in Insulin-like Growth Factor 2 (IGF2) gene and their associations with body weight and growth rate traits in indigenous guinea fowls (Numida meleagris) of northern Ghana","authors":"Kurukulasuriya Mariesta Jayaroshini Ahiagbe ,&nbsp;Christopher Adenyo ,&nbsp;Miho Inoue-Murayama ,&nbsp;Esinam Nancy Amuzu-Aweh ,&nbsp;Patrick Bonney ,&nbsp;Boniface Baboreka Kayang","doi":"10.1016/j.angen.2022.200139","DOIUrl":"10.1016/j.angen.2022.200139","url":null,"abstract":"<div><p><span>Insulin-like Growth Factor 2 (IGF2) plays important roles in stimulating cell proliferation, differentiation and migration culminating its effects as a modulator of juvenile growth in animals. Although the gene that codes for IGF2 (</span><em>IGF2</em><span>) has been investigated as a candidate gene in several livestock species, there is no information on polymorphisms in </span><em>IGF2</em> in guinea fowls (<em>gIGF2</em><span>), an important indigenous poultry species from West Africa. Therefore, this study sought to identify the Single Nucleotide Polymorphisms (SNPs) in three populations of indigenous guinea fowls in northern Ghana. Target genomic regions in </span><em>gIGF2</em> were amplified and sequenced from 84 indigenous guinea fowls from Upper East Region (<em>n</em> = 17), former Northern Region (<em>n</em> = 22) and Upper West Region (<em>n</em> = 45) of Ghana together with domesticated French variety (<em>n</em><span> = 3). The sequences were aligned with the reference genomic sequence (domesticated French variety) of chromosome 6 (GenBank accession no., </span><span>NC_034414.1</span><svg><path></path></svg><span>) to identify SNPs. Statistical associations among the genotypes arising from the SNPs and juvenile growth traits were estimated using linear models. Two novel SNPs were identified in </span><em>gIGF2</em><span><span> among the indigenous guinea fowls. An insertion of a Guanine (G) within a poly G motif of the intron following the third exon at the 13,955,730 bp location was identified in the majority (84.5%) of indigenous guinea fowls, while the wild type allele was observed in the minority of indigenous guinea fowls and in the domesticated French variety sampled. Also, a biallelic transition arising from the substitution of G by </span>Adenine (A) at position 13,956,496 bp (13,956,496 G &gt; A) located on the fourth exon, which codes for most of the extension peptide of prepro IGF2, was observed in the minority (11.9%) of indigenous guinea fowls. No significant associations among the genotypes arising from the two SNPs, with body weights and weekly growth rates, were identified.</span></p></div>","PeriodicalId":7893,"journal":{"name":"Animal Gene","volume":"27 ","pages":"Article 200139"},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46620782","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Most reactions leading to neuropathic pain at dorsal root ganglion of rats with spinal nerve ligation have occurred in the early phase 脊髓神经结扎大鼠引起背根神经节神经性疼痛的反应多发生在早期
Animal Gene Pub Date : 2022-09-01 DOI: 10.1016/j.angen.2022.200138
Chunmei Wang, Xiaofang Lin, Wei Tang, Dongmei Wang
{"title":"Most reactions leading to neuropathic pain at dorsal root ganglion of rats with spinal nerve ligation have occurred in the early phase","authors":"Chunmei Wang,&nbsp;Xiaofang Lin,&nbsp;Wei Tang,&nbsp;Dongmei Wang","doi":"10.1016/j.angen.2022.200138","DOIUrl":"10.1016/j.angen.2022.200138","url":null,"abstract":"<div><p><span>In order to study the mechanism of early and late neuropathic pain, Ribonucleic acid<span><span> sequencing (RNA-seq) technique was used to analyze the dorsal root ganglion (DRG) </span>transcriptome<span> of rat induced by spinal nerve ligation (SNL). It was found that most of the reactions leading to neuropathic pain at dorsal root ganglion, such as pro-inflammatory response and immunity, occurred in the early phase.378 genes are up-regulated and 42 genes are down-regulated in the early phase, while in the late phase, there are 27 up-regulated genes and 23 down-regulated genes. Four new pain related genes are found: </span></span></span><em>Cd8a, Bub1b, Ccna2</em> and <em>Cdk1</em><span>. From the analysis of Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways and Gene Ontology<span> (GO) functions enriched by differentially expressed genes (DEGs), dorsal root ganglion should carry out immunities, pro-inflammations and related compensatory regulation in response to peripheral nerve injury in the early phase. The late phase is characterized by maintaining long-term or chronic inflammation.</span></span></p></div>","PeriodicalId":7893,"journal":{"name":"Animal Gene","volume":"26 ","pages":"Article 200138"},"PeriodicalIF":0.0,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42555601","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification and characterization of new putative antimicrobial peptides from scorpion Chaerilus tricostatus revealed by in silico analysis and structure modeling 通过硅分析和结构建模,鉴定和表征新推测的三毛蝎抗菌肽
Animal Gene Pub Date : 2022-09-01 DOI: 10.1016/j.angen.2022.200137
Marzieh Rostaminejad , Amir Savardashtaki , Mojtaba Mortazavi , Sahar Khajeh
{"title":"Identification and characterization of new putative antimicrobial peptides from scorpion Chaerilus tricostatus revealed by in silico analysis and structure modeling","authors":"Marzieh Rostaminejad ,&nbsp;Amir Savardashtaki ,&nbsp;Mojtaba Mortazavi ,&nbsp;Sahar Khajeh","doi":"10.1016/j.angen.2022.200137","DOIUrl":"10.1016/j.angen.2022.200137","url":null,"abstract":"<div><p><span><span>Antimicrobial peptides (AMPs) are considered a promising therapeutic strategy because of their high potential for fighting against antibiotic-resistant pathogens. Scorpion venom is a rich resource of AMPs because of their biodiversity. Accordingly, we aimed to employ a bioinformatics-based approach to search for new putative AMPs from available omics datasets. The </span>amino acid sequence<span> of the peptide Ctriporin was used as query for a blast search in the UniProt and NCBI<span> databases, resulting in the identification of 14 homologous peptides from scorpion venom. To predict antimicrobial activity, all sequences were analyzed using various machine learning-based algorithms on the Collection of Anti-Microbial Peptides (CAMP</span></span></span><sub>R3</sub>) database. Furthermore, the online tools Antifp, AVPpred, and iACP were used to predict the antifungal, antiviral, and anticancer activity, respectively. The physicochemical properties were also evaluated by online tools and compared with Antimicrobial Peptide Database Calculator and Predictor (APD3). Finally, the three-dimensional structure modeling of the peptides Ctriporin, Ctri10036, Ctri9610, and Ctri10033 was performed using I-TASSER and PEP-FOLD 3.5. Our in silico analysis led to the identification of three new peptides with potential antimicrobial properties from the venom of the scorpion <em>Chaerilus tricostatus</em>, which can be suitable candidates for further experimental validation studies.</p></div>","PeriodicalId":7893,"journal":{"name":"Animal Gene","volume":"26 ","pages":"Article 200137"},"PeriodicalIF":0.0,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43667557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Potential probiotic properties and molecular identification of lactic acid Bacteria isolated from fermented millet porridge or ragi koozh and jalebi batter 发酵小米粥、腊肠和腊肠面糊中乳酸菌的潜在益生菌特性及分子鉴定
Animal Gene Pub Date : 2022-09-01 DOI: 10.1016/j.angen.2022.200134
Manoharan Manovina , Balasubramanian Thamarai Selvi , Ragothaman Prathiviraj , Joseph Selvin
{"title":"Potential probiotic properties and molecular identification of lactic acid Bacteria isolated from fermented millet porridge or ragi koozh and jalebi batter","authors":"Manoharan Manovina ,&nbsp;Balasubramanian Thamarai Selvi ,&nbsp;Ragothaman Prathiviraj ,&nbsp;Joseph Selvin","doi":"10.1016/j.angen.2022.200134","DOIUrl":"10.1016/j.angen.2022.200134","url":null,"abstract":"<div><p><span><span>The consumer market has significantly increased in the search for nutritional and probiotic formulated products. In the present study, probiotic characterization parameters have been evaluated for the bacteria isolated from fermented </span>millet<span> porridge or ragi koozh and jalebi batter. Initially, 30 colonies were randomly picked and screened for lactic acid production. Lactic acid-producing 13 isolates showing gram-positive cell wall, non-spore-forming capacity and catalase-negative strains were subjected to probiotic characterization. Among 13 isolates, 2 isolates S9 and S13 exhibited good tolerance towards in-vitro characterization parameters such as acid and bile tolerance, adhesion to hydrocarbons, autoaggregation, co-aggregation, antibacterial activity, and safety measures. The potential probiotic strains S9 and S13 were identified by molecular methods, and evolutionary imprints and submitted to GenBank as </span></span><em>Weisella cibaria</em> and <span><em>Enterococcus</em><em> lactis</em></span>. Results showed the efficacy of probiotic characteristics of isolates S9 and S13 which can be used for the formulation of probiotic products.</p></div>","PeriodicalId":7893,"journal":{"name":"Animal Gene","volume":"26 ","pages":"Article 200134"},"PeriodicalIF":0.0,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47906522","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
Detection of extended Spectrum β-lactamase (ESBL) genes in Escherichia coli isolated from fecal samples of apparently healthy dogs in Ibadan, Nigeria 尼日利亚伊巴丹市表面健康犬粪便中大肠杆菌延伸谱β-内酰胺酶(ESBL)基因检测
Animal Gene Pub Date : 2022-09-01 DOI: 10.1016/j.angen.2022.200133
Olutayo Israel Falodun, Mobolaji Christianah Afolabi, Akeem Ganiyu Rabiu
{"title":"Detection of extended Spectrum β-lactamase (ESBL) genes in Escherichia coli isolated from fecal samples of apparently healthy dogs in Ibadan, Nigeria","authors":"Olutayo Israel Falodun,&nbsp;Mobolaji Christianah Afolabi,&nbsp;Akeem Ganiyu Rabiu","doi":"10.1016/j.angen.2022.200133","DOIUrl":"10.1016/j.angen.2022.200133","url":null,"abstract":"<div><p>The incidence of Extended Spectrum β-Lactamases (ESBL) in <em>Escherichia coli</em><span> has generated trepidations because dissemination of ESBL genes constitutes risk to public health. The current study aims to determine antibiotic susceptibility and carriage of ESBL </span><em>bla</em><sub>SHV</sub>, <em>bla</em><sub>TEM</sub> and <em>bla</em><sub>CTX-M</sub> by <em>E. coli</em> isolated from apparently healthy dogs in Ibadan conurbation, Nigeria.</p><p>Freshly passed fecal samples (<em>n</em> = 60) were collected from dogs into sterile sample bottles and processed to isolate <em>E. coli</em> following standard methods. Isolated <em>E. coli</em><span> were confirmed through Polymerase Chain Reaction (PCR) by means of </span><em>uidA</em><span> and tested against 10 antibiotics via Kirby-Bauer disc diffusion technique. </span><em>Escherichia coli</em> showing phenotypic ESBL production were selected for ESBL <em>bla</em><sub>SHV</sub>, <em>bla</em><sub>TEM</sub> <em>bla</em><sub>CTX-M</sub><span> genotyping using multiplex PCR.</span></p><p>Of the 31 <em>E. coli</em><span> isolates confirmed, 10 (32.3%), 9 (29.0%) and 7 (22.6%) were resistant to ampicillin<span>, tetracycline and trimethoprim/sulfamethoxazole, respectively while 8 (25.8%) were multidrug resistant (MDR). </span></span><em>Escherichia coli</em> isolates (<em>n</em> = 2/8) that were MDR harboured at least one of <em>bla</em><sub>SHV</sub>, <em>bla</em><sub>TEM</sub> and <em>bla</em><sub>CTX-M</sub> genes while another isolate (<em>n</em> = 1) simultaneously possessed the three ESBL genes. Apparently healthy dogs are likely reservoirs of ESBL- <em>E. coli</em> that can spread to pet owners through close contact with their companion animals.</p></div>","PeriodicalId":7893,"journal":{"name":"Animal Gene","volume":"26 ","pages":"Article 200133"},"PeriodicalIF":0.0,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48146599","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular identification of ornamental loaches (Cypriniformes, Cobitoidei) of North East India using mitochondrial genes 利用线粒体基因对印度东北部观赏泥鳅(Cypriniformes,Cobitoidei)的分子鉴定
Animal Gene Pub Date : 2022-09-01 DOI: 10.1016/j.angen.2022.200136
Mukunda Goswami , A. Pavan Kumar , Grishma S. Patil , Trinica George , Rupak Nath , R.N. Bhuyan , C. Siva , M.A. Laskar , Samson Sumer
{"title":"Molecular identification of ornamental loaches (Cypriniformes, Cobitoidei) of North East India using mitochondrial genes","authors":"Mukunda Goswami ,&nbsp;A. Pavan Kumar ,&nbsp;Grishma S. Patil ,&nbsp;Trinica George ,&nbsp;Rupak Nath ,&nbsp;R.N. Bhuyan ,&nbsp;C. Siva ,&nbsp;M.A. Laskar ,&nbsp;Samson Sumer","doi":"10.1016/j.angen.2022.200136","DOIUrl":"10.1016/j.angen.2022.200136","url":null,"abstract":"<div><p><span>North East (NE) India, referred as Biodiversity Hot Spot, is the natural habitat of a large variety of ornamental fishes<span>. Among all the ornamental fishes available in NE India, Loaches are of great importance in the ornamental fish trade. In this study, 38 specimens from ten loaches species of North-eastern India are characterized using three mitochondrial genes<span> i.e. cytochrome </span></span></span><em>c</em><span> oxidase subunit I (COI), 16S rRNA and cytochrome </span><em>b</em> (Cyt b). The average genetic distance values for all the three mitochondrial genes have increased gradually when moving up from species to genus to family levels. Among the genes, Cyt <em>b</em> gene showed relatively higher genetic distance values than mitochondrial 16S rRNA and COI genes. Some of the specimens of <span><em>Botia</em></span> and <span><em>Lepidocephalichthys</em></span> showed higher intraspecific genetic distance values compared to other specimens under analysis.</p></div>","PeriodicalId":7893,"journal":{"name":"Animal Gene","volume":"26 ","pages":"Article 200136"},"PeriodicalIF":0.0,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45688875","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A β-defensin isoform from the Flathead grey mullet, Mugil cephalus (Linnaeus 1758): Structural and functional characterisation in silico 来自平头灰鲻鱼的β防御素异构体,Mugil cephalus (Linnaeus 1758):结构和功能特征的计算机分析
Animal Gene Pub Date : 2022-08-01 DOI: 10.1016/j.angen.2022.200128
P.P. Athira , V.V. Anooja , M.V. Anju , S. Neelima , K. Archana , S. Muhammed Musthafa , Swapna P. Antony , I.S. Bright Singh , Rosamma Philip
{"title":"A β-defensin isoform from the Flathead grey mullet, Mugil cephalus (Linnaeus 1758): Structural and functional characterisation in silico","authors":"P.P. Athira ,&nbsp;V.V. Anooja ,&nbsp;M.V. Anju ,&nbsp;S. Neelima ,&nbsp;K. Archana ,&nbsp;S. Muhammed Musthafa ,&nbsp;Swapna P. Antony ,&nbsp;I.S. Bright Singh ,&nbsp;Rosamma Philip","doi":"10.1016/j.angen.2022.200128","DOIUrl":"10.1016/j.angen.2022.200128","url":null,"abstract":"<div><p><span><span>Defensins are an important class of </span>AMPs<span>, rich in cysteine with antibacterial, antifungal and antiviral functions. The present study identified and functionally characterised a β-defensin gene from Grey mullet, </span></span><span><em>Mugil cephalus</em><em>,</em></span> termed as <em>Mc</em><span><span>-Def. A 192 base pair complementary DNA with an open reading frame encoding 63 </span>amino acids comprising 20 amino acid signal and 43 amino acid mature peptide region was obtained. </span><em>Mc</em><span><span>-Def has a net charge of 3.9 and a molecular weight of 7.27 kDa with an isoelectric point of 8.88. It possessed six cysteines forming 3 </span>disulphide bonds between C</span><sup>1</sup>–C<sup>5</sup>, C<sup>2</sup>–C<sup>4</sup> and C<sup>3</sup>–C<sup>6</sup><span><span>. Three dimensional structure identified a short N-terminal α helix followed by β sheet strands stabilized by disulfide bonds. The mRNA structure was predicted by Biomodel server with significant MEF score. Multiple </span>sequence alignment and phylogeny revealed the sequence similarity of </span><em>Mc</em>-Def with fish β-defensin 2 type of AMPs. Molecular diversity and evolution of β-defensin provided immunity to host system against various infections. <em>In silico</em><span> analysis identified its potential as antibacterial, antifungal, anticancer, antioxidant and non-hemolytic peptide activity. These intriguing results firmly suggest that the </span><em>Mc</em>-Def can be used as a potent drug molecule in fish health management.</p></div>","PeriodicalId":7893,"journal":{"name":"Animal Gene","volume":"25 ","pages":"Article 200128"},"PeriodicalIF":0.0,"publicationDate":"2022-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54099384","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Morphogenetic diversity of the selected hatchery populations of an Indian major carp (Labeo rohita, Hamilton, 1822) in the Mymensingh region of Bangladesh 孟加拉国迈门辛格地区一种印度主要鲤鱼(Labeo rohita, Hamilton, 1822)孵卵种群的形态发生多样性
Animal Gene Pub Date : 2022-08-01 DOI: 10.1016/j.angen.2022.200131
A. K. Shakur Ahammad , Md. Asaduzzaman , Tanzina Ferdusy , Md. Mehefuzul Islam , Li Lian Wong , Md. Moshiur Rahman , Mohammad Mahfujul Haque , Jayedul Hassan
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