Proceedings of SPIE--the International Society for Optical Engineering最新文献

筛选
英文 中文
Nucleus subtype classification using inter-modality learning. 利用跨模态学习进行核亚型分类
Proceedings of SPIE--the International Society for Optical Engineering Pub Date : 2024-02-01 Epub Date: 2024-04-03 DOI: 10.1117/12.3006237
Lucas W Remedios, Shunxing Bao, Samuel W Remedios, Ho Hin Lee, Leon Y Cai, Thomas Li, Ruining Deng, Can Cui, Jia Li, Qi Liu, Ken S Lau, Joseph T Roland, Mary K Washington, Lori A Coburn, Keith T Wilson, Yuankai Huo, Bennett A Landman
{"title":"Nucleus subtype classification using inter-modality learning.","authors":"Lucas W Remedios, Shunxing Bao, Samuel W Remedios, Ho Hin Lee, Leon Y Cai, Thomas Li, Ruining Deng, Can Cui, Jia Li, Qi Liu, Ken S Lau, Joseph T Roland, Mary K Washington, Lori A Coburn, Keith T Wilson, Yuankai Huo, Bennett A Landman","doi":"10.1117/12.3006237","DOIUrl":"10.1117/12.3006237","url":null,"abstract":"<p><p>Understanding the way cells communicate, co-locate, and interrelate is essential to understanding human physiology. Hematoxylin and eosin (H&E) staining is ubiquitously available both for clinical studies and research. The Colon Nucleus Identification and Classification (CoNIC) Challenge has recently innovated on robust artificial intelligence labeling of six cell types on H&E stains of the colon. However, this is a very small fraction of the number of potential cell classification types. Specifically, the CoNIC Challenge is unable to classify epithelial subtypes (progenitor, endocrine, goblet), lymphocyte subtypes (B, helper T, cytotoxic T), or connective subtypes (fibroblasts, stromal). In this paper, we propose to use inter-modality learning to label previously un-labelable cell types on virtual H&E. We leveraged multiplexed immunofluorescence (MxIF) histology imaging to identify 14 subclasses of cell types. We performed style transfer to synthesize virtual H&E from MxIF and transferred the higher density labels from MxIF to these virtual H&E images. We then evaluated the efficacy of learning in this approach. We identified helper T and progenitor nuclei with positive predictive values of 0.34 ± 0.15 (prevalence 0.03 ± 0.01) and 0.47 ± 0.1 (prevalence 0.07 ± 0.02) respectively on virtual H&E. This approach represents a promising step towards automating annotation in digital pathology.</p>","PeriodicalId":74505,"journal":{"name":"Proceedings of SPIE--the International Society for Optical Engineering","volume":"12933 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11392413/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142302982","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Eosinophils Instance Object Segmentation on Whole Slide Imaging Using Multi-label Circle Representation. 基于多标签圆表示的全切片图像中嗜酸性粒细胞实例目标分割。
Proceedings of SPIE--the International Society for Optical Engineering Pub Date : 2024-02-01 Epub Date: 2024-04-03 DOI: 10.1117/12.3005995
Yilin Liu, Ruining Deng, Juming Xiong, Regina N Tyree, Hernan Correa, Girish Hiremath, Yaohong Wang, Yuankai Huo
{"title":"Eosinophils Instance Object Segmentation on Whole Slide Imaging Using Multi-label Circle Representation.","authors":"Yilin Liu, Ruining Deng, Juming Xiong, Regina N Tyree, Hernan Correa, Girish Hiremath, Yaohong Wang, Yuankai Huo","doi":"10.1117/12.3005995","DOIUrl":"https://doi.org/10.1117/12.3005995","url":null,"abstract":"<p><p>Eosinophilic esophagitis (EOE) is a chronic and relapsing disease characterized by esophageal inflammation. Symptoms of EoE include difficulty swallowing, food impaction, and chest pain which significantly impact the quality of life, resulting in nutritional impairments, social limitations, and psychological distress. The diagnosis of EoE is typically performed with a threshold (15 to 20) of eosinophils (Eos) per high-power field (HPF). Since the current counting process of Eos is a resource-intensive process for human pathologists, automatic methods are desired. Circle representation has been shown as a more precise, yet less complicated, representation for automatic instance cell segmentation such as CircleSnake approach. However, the CircleSnake was designed as a single-label model, which is not able to deal with multi-label scenarios. In this paper, we propose the multi-label CircleSnake model for instance segmentation on Eos. It extends the original CircleSnake model from a single-label design to a multi-label model, allowing segmentation of multiple object types. Experimental results illustrate the CircleSnake model's superiority over the traditional Mask R-CNN model and DeepSnake model in terms of average precision (AP) in identifying and segmenting eosinophils, thereby enabling enhanced characterization of EoE. This automated approach holds promise for streamlining the assessment process and improving diagnostic accuracy in EoE analysis. The source code has been made publicly available at https://github.com/yilinliu610730/EoE.</p>","PeriodicalId":74505,"journal":{"name":"Proceedings of SPIE--the International Society for Optical Engineering","volume":"12933 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12058230/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144058457","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deep Learning-Based Open Source Toolkit for Eosinophil Detection in Pediatric Eosinophilic Esophagitis. 基于深度学习的儿童嗜酸性食管炎嗜酸性粒细胞检测开源工具包。
Proceedings of SPIE--the International Society for Optical Engineering Pub Date : 2024-02-01 Epub Date: 2024-04-03 DOI: 10.1117/12.3006520
Juming Xiong, Yilin Liu, Ruining Deng, Regina N Tyree, Hernan Correa, Girish Hiremath, Yaohong Wang, Yuankai Huo
{"title":"Deep Learning-Based Open Source Toolkit for Eosinophil Detection in Pediatric Eosinophilic Esophagitis.","authors":"Juming Xiong, Yilin Liu, Ruining Deng, Regina N Tyree, Hernan Correa, Girish Hiremath, Yaohong Wang, Yuankai Huo","doi":"10.1117/12.3006520","DOIUrl":"https://doi.org/10.1117/12.3006520","url":null,"abstract":"<p><p>Eosinophilic Esophagitis (EoE) is a chronic, immune/antigen-mediated esophageal disease, characterized by symptoms related to esophageal dysfunction and histological evidence of eosinophil-dominant inflammation. Owing to the intricate microscopic representation of EoE in imaging, current methodologies which depend on manual identification are not only labor-intensive but also prone to inaccuracies. In this study, we develop an open-source toolkit, named Open-EoE, to perform end-to-end whole slide image (WSI) level eosinophil (Eos) detection using one line of command via Docker. Specifically, the toolkit supports three state-of-the-art deep learning-based object detection models. Furthermore, Open-EoE further optimizes the performance by implementing an ensemble learning strategy, and enhancing the precision and reliability of our results. The experimental results demonstrated that the Open-EoE toolkit can efficiently detect Eos on a testing set with 289 WSIs. At the widely accepted threshold of ≥ 15 Eos per high power field (HPF) for diagnosing EoE, the Open-EoE achieved an accuracy of 91%, showing decent consistency with pathologist evaluations. This suggests a promising avenue for integrating machine learning methodologies into the diagnostic process for EoE. The docker and source code has been made publicly available at https://github.com/hrlblab/Open-EoE.</p>","PeriodicalId":74505,"journal":{"name":"Proceedings of SPIE--the International Society for Optical Engineering","volume":"12933 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12058220/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144037032","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
ASL MRI Denoising via Multi Channel Collaborative Low-Rank Regularization. 通过多通道协作低库正则化实现 ASL MRI 去噪
Proceedings of SPIE--the International Society for Optical Engineering Pub Date : 2024-02-01 Epub Date: 2024-04-02 DOI: 10.1117/12.3005223
Hangfan Liu, Bo Li, Yiran Li, Rebecca Welsh, Ze Wang
{"title":"ASL MRI Denoising via Multi Channel Collaborative Low-Rank Regularization.","authors":"Hangfan Liu, Bo Li, Yiran Li, Rebecca Welsh, Ze Wang","doi":"10.1117/12.3005223","DOIUrl":"10.1117/12.3005223","url":null,"abstract":"<p><p>Arterial spin labeling (ASL) perfusion MRI is the only non-invasive imaging technique for quantifying regional cerebral blood flow (CBF), which is a fundamental physiological variable. ASL MRI has a relatively low signal-to-noise-ratio (SNR). In this study, we proposed a novel ASL denoising method by simultaneously exploiting the inter- and intra-receive channel data correlations. MRI including ASL MRI data have been routinely acquired with multi-channel coils but current denoising methods are designed for denoising the coil-combined data. Indeed, the concurrently acquired multi-channel images differ only by coil sensitivity weighting and random noise, resulting in a strong low-rank structure of the stacked multi-channel data matrix. In our method, this matrix was formed by stacking the vectorized slices from different channels. Matrix rank was then approximately measured through the logarithm-determinant of the covariance matrix. Notably, our filtering technique is applied directly to complex data, avoiding the need to separate magnitude and phase or divide real and imaginary data, thereby ensuring minimal information loss. The degree of low-rank regularization is controlled based on the estimated noise level, striking a balance between noise removal and texture preservation. A noteworthy advantage of our framework is its freedom from parameter tuning, distinguishing it from most existing methods. Experimental results on real-world imaging data demonstrate the effectiveness of our proposed approach in significantly improving ASL perfusion quality. By effectively mitigating noise while preserving important textural information, our method showcases its potential for enhancing the utility and accuracy of ASL perfusion MRI, paving the way for improved neuroimaging studies and clinical diagnoses.</p>","PeriodicalId":74505,"journal":{"name":"Proceedings of SPIE--the International Society for Optical Engineering","volume":"12926 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11190560/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141443895","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Spatiospectral image processing workflow considerations for advanced MR spectroscopy of the brain. 脑部高级 MR 光谱分析的空间光谱图像处理工作流程考虑因素。
Proceedings of SPIE--the International Society for Optical Engineering Pub Date : 2024-02-01 Epub Date: 2024-04-02 DOI: 10.1117/12.3005391
Leon Y Cai, Stephanie N Del Tufo, Laura Barquero, Micah D'Archangel, Lanier Sachs, Laurie E Cutting, Nicole Glaser, Simona Ghetti, Sarah S Jaser, Adam W Anderson, Lori C Jordan, Bennett A Landman
{"title":"Spatiospectral image processing workflow considerations for advanced MR spectroscopy of the brain.","authors":"Leon Y Cai, Stephanie N Del Tufo, Laura Barquero, Micah D'Archangel, Lanier Sachs, Laurie E Cutting, Nicole Glaser, Simona Ghetti, Sarah S Jaser, Adam W Anderson, Lori C Jordan, Bennett A Landman","doi":"10.1117/12.3005391","DOIUrl":"10.1117/12.3005391","url":null,"abstract":"<p><p>Magnetic resonance spectroscopy (MRS) is one of the few non-invasive imaging modalities capable of making neurochemical and metabolic measurements <i>in vivo</i>. Traditionally, the clinical utility of MRS has been narrow. The most common use has been the \"single-voxel spectroscopy\" variant to discern the presence of a lactate peak in the spectra in one location in the brain, typically to evaluate for ischemia in neonates. Thus, the reduction of rich spectral data to a binary variable has not classically necessitated much signal processing. However, scanners have become more powerful and MRS sequences more advanced, increasing data complexity and adding 2 to 3 spatial dimensions in addition to the spectral one. The result is a spatially- and spectrally-variant MRS image ripe for image processing innovation. Despite this potential, the logistics for robustly accessing and manipulating MRS data across different scanners, data formats, and software standards remain unclear. Thus, as research into MRS advances, there is a clear need to better characterize its image processing considerations to facilitate innovation from scientists and engineers. Building on established neuroimaging standards, we describe a framework for manipulating these images that generalizes to the voxel, spectral, and metabolite level across space and multiple imaging sites while integrating with LCModel, a widely used quantitative MRS peak-fitting platform. In doing so, we provide examples to demonstrate the advantages of such a workflow in relation to recent publications and with new data. Overall, we hope our characterizations will lower the barrier of entry to MRS processing for neuroimaging researchers.</p>","PeriodicalId":74505,"journal":{"name":"Proceedings of SPIE--the International Society for Optical Engineering","volume":"12926 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11364408/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142115751","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Fluoroscopic Procedure-Room Scatter-Dose Reduction Using a Region-of-Interest (ROI) Attenuator. 使用感兴趣区 (ROI) 衰减器减少透视手术室的散射剂量。
Proceedings of SPIE--the International Society for Optical Engineering Pub Date : 2024-02-01 Epub Date: 2024-04-01 DOI: 10.1117/12.3006856
Martina P Orji, Kyle Williams, S V Setlur Nagesh, Stephen Rudin, Daniel R Bednarek
{"title":"Fluoroscopic Procedure-Room Scatter-Dose Reduction Using a Region-of-Interest (ROI) Attenuator.","authors":"Martina P Orji, Kyle Williams, S V Setlur Nagesh, Stephen Rudin, Daniel R Bednarek","doi":"10.1117/12.3006856","DOIUrl":"10.1117/12.3006856","url":null,"abstract":"<p><p>During fluoroscopically-guided interventional (FGI) procedures, dose to the patient as well as the scatter dose to staff can be high. However, a significant dose reduction can be possible by using a region-of-interest (ROI) attenuator that reduces the x-ray intensity in the peripheral x-ray field while providing full field of view imaging. In this work, we investigated the magnitude of scatter dose reduction to staff made possible by using an ROI attenuator composed of 0.7 mm Cu with a central circular hole that projected a 5.4 cm ROI onto a Kyoto anthropomorphic phantom in the head, chest, and abdomen regions. A 150-cc ionization chamber was placed on a stand at a height of 150 cm (eye level) from the floor and 25 cm and 50 cm lateral distance from the gantry isocenter in a direction perpendicular to the table centerline to measure scatter dose at different positions along the length of the table. Scatter dose per entrance air kerma (mGy/Gy) was measured with and without the ROI attenuator and the percent scatter reduction for the ROI attenuator was determined as a function of staff positions, beam energy and gantry angulation. For head imaging, the measured percent dose reduction was 50%-65% and, for chest and abdomen imaging, the scatter dose reduction was 63%-72% at 50 cm lateral distance when using this ROI attenuator with about 20% beam transmission at 80 kVp. Overall, a considerable reduction of scattered radiation in the interventional room can be realized using an ROI attenuator.</p>","PeriodicalId":74505,"journal":{"name":"Proceedings of SPIE--the International Society for Optical Engineering","volume":"12925 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11512733/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142514331","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An Ensemble Learning Method for Detection of Head and Neck Squamous Cell Carcinoma Using Polarized Hyperspectral Microscopic Imaging. 利用偏振高光谱显微成像检测头颈部鳞状细胞癌的集合学习法
Proceedings of SPIE--the International Society for Optical Engineering Pub Date : 2024-02-01 Epub Date: 2024-04-03 DOI: 10.1117/12.3007869
Hasan K Mubarak, Ximing Zhou, Doreen Palsgrove, Baran D Sumer, Amy Y Chen, Baowei Fei
{"title":"An Ensemble Learning Method for Detection of Head and Neck Squamous Cell Carcinoma Using Polarized Hyperspectral Microscopic Imaging.","authors":"Hasan K Mubarak, Ximing Zhou, Doreen Palsgrove, Baran D Sumer, Amy Y Chen, Baowei Fei","doi":"10.1117/12.3007869","DOIUrl":"10.1117/12.3007869","url":null,"abstract":"<p><p>Head and neck squamous cell carcinoma (HNSCC) has a high mortality rate. In this study, we developed a Stokes-vector-derived polarized hyperspectral imaging (PHSI) system for H&E-stained pathological slides with HNSCC and built a dataset to develop a deep learning classification method based on convolutional neural networks (CNN). We use our polarized hyperspectral microscope to collect the four Stokes parameter hypercubes (S0, S1, S2, and S3) from 56 patients and synthesize pseudo-RGB images using a transformation function that approximates the human eye's spectral response to visual stimuli. Each image is divided into patches. Data augmentation is applied using rotations and flipping. We create a four-branch model architecture where each branch is trained on one Stokes parameter individually, then we freeze the branches and fine-tune the top layers of our model to generate final predictions. Our results show high accuracy, sensitivity, and specificity, indicating that our model performed well on our dataset. Future works can improve upon these results by training on more varied data, classifying tumors based on their grade, and introducing more recent architectural techniques.</p>","PeriodicalId":74505,"journal":{"name":"Proceedings of SPIE--the International Society for Optical Engineering","volume":"12933 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11073817/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140869877","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Assessing variability in non-contrast CT for the evaluation of stroke: The effect of CT image reconstruction conditions on AI-based CAD measurements of ASPECTS value and hypodense volume. 评估用于评估中风的非对比 CT 的可变性:CT 图像重建条件对基于 AI 的 CAD 测量 ASPECTS 值和低密度体积的影响。
Proceedings of SPIE--the International Society for Optical Engineering Pub Date : 2024-02-01 Epub Date: 2024-04-03 DOI: 10.1117/12.3006582
Spencer H Welland, Grace Hyun J Kim, Anil Yadav, John M Hoffman, William Hsu, Matthew S Brown, Elham Tavakkol, Kambiz Nael, Michael F McNitt-Gray
{"title":"Assessing variability in non-contrast CT for the evaluation of stroke: The effect of CT image reconstruction conditions on AI-based CAD measurements of ASPECTS value and hypodense volume.","authors":"Spencer H Welland, Grace Hyun J Kim, Anil Yadav, John M Hoffman, William Hsu, Matthew S Brown, Elham Tavakkol, Kambiz Nael, Michael F McNitt-Gray","doi":"10.1117/12.3006582","DOIUrl":"https://doi.org/10.1117/12.3006582","url":null,"abstract":"<p><strong>Purpose: </strong>To rule out hemorrhage, non-contrast CT (NCCT) scans are used for early evaluation of patients with suspected stroke. Recently, artificial intelligence tools have been developed to assist with determining eligibility for reperfusion therapies by automating measurement of the Alberta Stroke Program Early CT Score (ASPECTS), a 10-point scale with > 7 or ≤ 7 being a threshold for change in functional outcome prediction and higher chance of symptomatic hemorrhage, and hypodense volume. The purpose of this work was to investigate the effects of CT reconstruction kernel and slice thickness on ASPECTS and hypodense volume.</p><p><strong>Methods: </strong>The NCCT series image data of 87 patients imaged with a CT stroke protocol at our institution were reconstructed with 3 kernels (H10s-smooth, H40s-medium, H70h-sharp) and 2 slice thicknesses (1.5mm and 5mm) to create a reference condition (H40s/5mm) and 5 non-reference conditions. Each reconstruction for each patient was analyzed with the Brainomix e-Stroke software (Brainomix, Oxford, England) which yields an ASPECTS value and measure of total hypodense volume (mL).</p><p><strong>Results: </strong>An ASPECTS value was returned for 74 of 87 cases in the reference condition (13 failures). ASPECTS in non-reference conditions changed from that measured in the reference condition for 59 cases, 7 of which changed above or below the clinical threshold of 7 for 3 non-reference conditions. ANOVA tests were performed to compare the differences in protocols, Dunnett's post-hoc tests were performed after ANOVA, and a significance level of <i>p</i> < 0.05 was defined. There was no significant effect of kernel (<i>p</i> = 0.91), a significant effect of slice thickness (<i>p</i> < 0.01) and no significant interaction between these factors (<i>p</i> = 0.91). Post-hoc tests indicated no significant difference between ASPECTS estimated in the reference and any non-reference conditions. There was a significant effect of kernel (<i>p</i> < 0.01) and slice thickness (<i>p</i> < 0.01) on hypodense volume, however there was no significant interaction between these factors (<i>p</i> = 0.79). Post-hoc tests indicated significantly different hypodense volume measurements for H10s/1.5mm (<i>p</i> = 0.03), H40s/1.5mm (<i>p</i> < 0.01), H70h/5mm (<i>p</i> < 0.01). No significant difference was found in hypodense volume measured in the H10s/5mm condition (<i>p</i> = 0.96).</p><p><strong>Conclusion: </strong>Automated ASPECTS and hypodense volume measurements can be significantly impacted by reconstruction kernel and slice thickness.</p>","PeriodicalId":74505,"journal":{"name":"Proceedings of SPIE--the International Society for Optical Engineering","volume":"12927 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11027162/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140861230","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
3D Echocardiogram Visualization: A New Method Based on "Focus + Context". 三维超声心动图可视化:基于 "焦点+语境 "的新方法
Proceedings of SPIE--the International Society for Optical Engineering Pub Date : 2024-02-01 Epub Date: 2024-03-29 DOI: 10.1117/12.3006214
Samuelle St-Onge, Silvani Amin, Alana Cianciulli, Matthew A Jolley, Simon Drouin
{"title":"3D Echocardiogram Visualization: A New Method Based on \"Focus + Context\".","authors":"Samuelle St-Onge, Silvani Amin, Alana Cianciulli, Matthew A Jolley, Simon Drouin","doi":"10.1117/12.3006214","DOIUrl":"10.1117/12.3006214","url":null,"abstract":"<p><p>3D echocardiography (3DE) is the standard modality for visualizing heart valves and their surrounding anatomical structures. Commercial cardiovascular ultrasound systems commonly offer a set of parameters that allow clinical users to modify, in real time, visual aspects of the information contained in the echocardiogram. To our knowledge, there is currently no work that demonstrates if the methods currently used by commercial platforms are optimal. In addition, current platforms have limitations in adjusting the visibility of anatomical structures, such as reducing information that obstructs anatomical structures without removing essential clinical information. To overcome this, the present work proposes a new method for 3DE visualization based on \"focus + context\" (F+C), a concept which aims to present a detailed region of interest while preserving a less detailed overview of the surrounding context. The new method is intended to allow clinical users to modify parameter values differently within a certain region of interest, independently from the adjustment of contextual information. To validate this new method, a user study was conducted amongst clinical experts. As part of the user study, clinical experts adjusted parameters for five echocardiograms of patients with complete atrioventricular canal defect (CAVC) using both the method conventionally used by commercial platforms and the proposed method based on F+C. The results showed relevance for the F+C-based method to visualize 3DE of CAVC patients, where users chose significantly different parameter values with the F+C-based method.</p>","PeriodicalId":74505,"journal":{"name":"Proceedings of SPIE--the International Society for Optical Engineering","volume":"12929 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11077724/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140893131","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluating clinical and radiomic features for predicting lung cancer recurrence pre- and post-tumor resection. 评估预测肺癌切除前后复发的临床和放射学特征。
Proceedings of SPIE--the International Society for Optical Engineering Pub Date : 2024-02-01 Epub Date: 2024-04-02 DOI: 10.1117/12.3006091
Wai Lone J Ho, Nikolai Fetisov, Lawrence O Hall, Dmitry Goldgof, Matthew B Schabath
{"title":"Evaluating clinical and radiomic features for predicting lung cancer recurrence pre- and post-tumor resection.","authors":"Wai Lone J Ho, Nikolai Fetisov, Lawrence O Hall, Dmitry Goldgof, Matthew B Schabath","doi":"10.1117/12.3006091","DOIUrl":"10.1117/12.3006091","url":null,"abstract":"<p><p>Among patients with early-stage non-small cell lung cancer (NSCLC) undergoing surgical resection, identifying who is at high-risk of recurrence can inform clinical guidelines with respect to more aggressive follow-up and/or adjuvant therapy. While predicting recurrence based on pre-surgical resection data is ideal, clinically important pathological features are only evaluated postoperatively. Therefore, we developed two supervised classification models to assess the importance of pre- and post-surgical features for predicting 5-year recurrence. An integrated dataset was generated by combining clinical covariates and radiomic features calculated from pre-surgical computed tomography images. After removing correlated radiomic features, the SHapley Additive exPlanations (SHAP) method was used to measure feature importance and select relevant features. Binary classification was performed using a Support Vector Machine, followed by a feature ablation study assessing the impact of radiomic and clinical features. We demonstrate that the post-surgical model significantly outperforms the pre-surgical model in predicting lung cancer recurrence, with tumor pathological features and peritumoral radiomic features contributing significantly to the model's performance.</p>","PeriodicalId":74505,"journal":{"name":"Proceedings of SPIE--the International Society for Optical Engineering","volume":"12926 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11238903/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141592305","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
相关产品
×
本文献相关产品
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信