Journal of extracellular biology最新文献

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Uromodulin and the study of urinary extracellular vesicles 尿囊素与尿液细胞外囊泡研究
Journal of extracellular biology Pub Date : 2024-11-22 DOI: 10.1002/jex2.70022
Michael A. Harding, Hayrettin Yavuz, Annika Gathmann, Samantha Upson, Agnieszka Swiatecka-Urban, Uta Erdbrügger
{"title":"Uromodulin and the study of urinary extracellular vesicles","authors":"Michael A. Harding,&nbsp;Hayrettin Yavuz,&nbsp;Annika Gathmann,&nbsp;Samantha Upson,&nbsp;Agnieszka Swiatecka-Urban,&nbsp;Uta Erdbrügger","doi":"10.1002/jex2.70022","DOIUrl":"https://doi.org/10.1002/jex2.70022","url":null,"abstract":"<p>Urinary extracellular vesicles (uEVs) are a promising substrate for discovering new biomarkers. In order to investigate the origin of uEVs and the cargo they carry, some types of downstream analysis of uEVs may require concentration and enrichment as well as removal of contaminating substances. Co-isolation of the abundant urinary protein uromodulin with uEVs can be a problem, and may interfere with some techniques, in particular with proteomic analysis tools. Methods of separating out uromodulin and its removal have also not been standardized. This review highlights aspects of uromodulin structure that makes it recalcitrant to separation from uEVs, summarizes frequently used techniques for uEV enrichment and how they affect uromodulin separation, and specific methods for uromodulin removal during preparation of uEVs. The necessity of uromodulin removal for various study endpoints is also examined.</p>","PeriodicalId":73747,"journal":{"name":"Journal of extracellular biology","volume":"3 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jex2.70022","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142685289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Size matters: Biomolecular compositions of small and large extracellular vesicles in the urine of glioblastoma patients 大小很重要:胶质母细胞瘤患者尿液中大小细胞外囊泡的生物分子组成
Journal of extracellular biology Pub Date : 2024-11-15 DOI: 10.1002/jex2.70021
Susannah M. Hallal, Liam A. Sida, Csilla Ágota Tűzesi, Brindha Shivalingam, Hao-Wen Sim, Michael E. Buckland, Laveniya Satgunaseelan, Kimberley L. Alexander
{"title":"Size matters: Biomolecular compositions of small and large extracellular vesicles in the urine of glioblastoma patients","authors":"Susannah M. Hallal,&nbsp;Liam A. Sida,&nbsp;Csilla Ágota Tűzesi,&nbsp;Brindha Shivalingam,&nbsp;Hao-Wen Sim,&nbsp;Michael E. Buckland,&nbsp;Laveniya Satgunaseelan,&nbsp;Kimberley L. Alexander","doi":"10.1002/jex2.70021","DOIUrl":"https://doi.org/10.1002/jex2.70021","url":null,"abstract":"<p>The promise of urinary extracellular vesicles (uEVs) in biomarker discovery is emerging. However, the characteristics and compositions of different uEV subpopulations across normal physiological and pathological states require rigorous explication. We recently reported proteomic signatures of small (s)-uEVs (&lt;200 nm membranous nanoparticles) and described putative biomarkers corresponding to the diagnosis, tumour burden and recurrence of the lethal adult primary brain tumour, glioblastoma. Here, we comprehensively characterise uEV populations with significantly different mean and mode particle sizes obtained by differential centrifugation at 100,000 × <i>g</i> (100K-uEVs; smaller) and 17,000 × <i>g</i> (17K-uEVs; larger) using Fourier-transform infrared spectroscopy and quantitative data-independent acquisition mass spectrometry. We show distinct differences in protein and lipid content, prominent protein secondary structures, and proteome distributions between uEV populations that can distinguish glioblastoma patients from healthy controls and correspond to clinically relevant tumour changes (i.e., recurrence and treatment resistance). Among the key findings is a putative seven-protein biomarker panel associated with 17K-uEVs that could distinguish all glioblastoma patients from healthy controls and accurately classify 98.2% of glioblastoma samples. These novel, significant findings demonstrate that both uEV populations offer individual and combined biomarker potential. Further research is warranted to elucidate the complete diagnostic, prognostic, and predictive capabilities of often-neglected 17K-uEV populations.</p>","PeriodicalId":73747,"journal":{"name":"Journal of extracellular biology","volume":"3 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jex2.70021","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142642214","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Assessment of bovine milk exosome preparation and lyophilized powder stability 牛乳外泌体制备和冻干粉稳定性评估
Journal of extracellular biology Pub Date : 2024-11-15 DOI: 10.1002/jex2.70009
Lu Lu, Chunle Han, Miao Wang, Huanqing Du, Ning Chen, Mengya Gao, Na Wang, Dongli Qi, Wei Bai, Jianxin Yin, Fengwei Dong, Tianshi Li, Xiaohu Ge
{"title":"Assessment of bovine milk exosome preparation and lyophilized powder stability","authors":"Lu Lu,&nbsp;Chunle Han,&nbsp;Miao Wang,&nbsp;Huanqing Du,&nbsp;Ning Chen,&nbsp;Mengya Gao,&nbsp;Na Wang,&nbsp;Dongli Qi,&nbsp;Wei Bai,&nbsp;Jianxin Yin,&nbsp;Fengwei Dong,&nbsp;Tianshi Li,&nbsp;Xiaohu Ge","doi":"10.1002/jex2.70009","DOIUrl":"https://doi.org/10.1002/jex2.70009","url":null,"abstract":"<p>Exosomes are cell-derived nanovesicles that play a crucial role in intercellular communication, presenting promising potential as biomarkers and therapeutic agents. Bovine milk exosomes (MK-Exo) show production scalability and cost-effectiveness, offering distinct advantages over cell-derived exosomes. However, exosome storage and transportation are challenging owing to their unstable nature, necessitating preservation at ultralow temperatures. Research findings suggest that freeze-drying could provide a viable solution; however, different sources of exosomes may require specific protocols. In this study, we aimed to successfully isolate high-purity MK-Exo and develop a specialized freeze-drying and lyophilization method for improved long-term preservation of MK-Exo. Specifically, the stability of the lyophilized MK-Exo was evaluated using storage stability tests. Notably, lyophilized MK-Exo remained stable for at least 3 months under high temperature of 50°C and for at least 24 months under low temperatures of 2°C–8°C, preserving their physicochemical properties and biological activity. Conclusively, these findings provide a potential solution for ambient-temperature transportation of MK-Exo, facilitating their industrial-scale production.</p>","PeriodicalId":73747,"journal":{"name":"Journal of extracellular biology","volume":"3 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jex2.70009","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142642305","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Hepatocyte-derived extracellular vesicles regulate liver regeneration through a negative feedback mechanism 肝细胞源性细胞外囊泡通过负反馈机制调节肝脏再生
Journal of extracellular biology Pub Date : 2024-11-15 DOI: 10.1002/jex2.70023
Mina McGinn, Christopher Rabender, Ross Mikkelsen, Vasily Yakovlev
{"title":"Hepatocyte-derived extracellular vesicles regulate liver regeneration through a negative feedback mechanism","authors":"Mina McGinn,&nbsp;Christopher Rabender,&nbsp;Ross Mikkelsen,&nbsp;Vasily Yakovlev","doi":"10.1002/jex2.70023","DOIUrl":"https://doi.org/10.1002/jex2.70023","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <p>While significant progress has been made in understanding various aspects of liver regeneration, the molecular mechanisms responsible for the initiation and termination of cell proliferation in the liver following massive tissue loss or injury of liver remain unknown. As it was previously shown, the loss of liver mass affects putative hepatocyte-specific mitogenic inhibitors in the blood. Although the presence of these putative inhibitors regulating precise liver regeneration has been described in numerous publications, they have never been identified. Extracellular vesicles (EVs) are nano-sized, membrane-limited structures secreted by cells into the extracellular space. Their proposed role is stable intercellular carriers of proteins and RNAs, predominantly micro-RNA, from secreted to recipient cells. Upon uptake by the recipient cells, EVs can significantly modulate their biological functions. In the present study, using in vivo and in vitro models, we demonstrate that hepatocyte proliferation and liver regeneration are regulated by EVs secreted by hepatocytes into the bloodstream. This regulation occurs through a negative feedback mechanism, which explains the precise regeneration of liver tissue after massive damage. We also demonstrate that an essential component of this mechanism is RNA carried by hepatocyte-derived EVs. Our findings open up a new and unexplored area of liver biology regarding the mechanisms involved in the precise regulation of liver regeneration after a massive tissue loss or injury. Further study of this mechanism will have a great influence on the development of new approaches to liver transplantation, various liver pathologies, and hepatic tumors.</p>\u0000 </section>\u0000 </div>","PeriodicalId":73747,"journal":{"name":"Journal of extracellular biology","volume":"3 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jex2.70023","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142642244","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
New perspectives of the role of skeletal muscle derived extracellular vesicles in the pathogenesis of amyotrophic lateral sclerosis: the ‘dying back’ hypothesis 骨骼肌细胞外囊泡在肌萎缩性脊髓侧索硬化症发病机制中作用的新视角:"死而复生 "假说。
Journal of extracellular biology Pub Date : 2024-11-12 DOI: 10.1002/jex2.70019
Carolina Sbarigia, Sophie Rome, Luciana Dini, Stefano Tacconi
{"title":"New perspectives of the role of skeletal muscle derived extracellular vesicles in the pathogenesis of amyotrophic lateral sclerosis: the ‘dying back’ hypothesis","authors":"Carolina Sbarigia,&nbsp;Sophie Rome,&nbsp;Luciana Dini,&nbsp;Stefano Tacconi","doi":"10.1002/jex2.70019","DOIUrl":"10.1002/jex2.70019","url":null,"abstract":"<p>Amyotrophic lateral sclerosis (ALS), is a progressive neurodegenerative disease that affects nerve cells in the brain and the spinal cord, and is characterized by muscle weakness, paralysis and ultimately, respiratory failure. The exact causes of ALS are not understood, though it is believed to combine genetic and environmental factors. Until now, it was admitted that motor neurons (MN) in the brain and spinal cord degenerate, leading to muscle weakness and paralysis. However, as ALS symptoms typically begin with muscle weakness or stiffness, a new hypothesis has recently emerged to explain the development of the pathology, that is, the ‘dying back hypothesis’, suggesting that this degeneration starts at the connections between MN and muscles, resulting in the loss of muscle function. Over time, this damage extends along the length of the MN, ultimately affecting their cell bodies in the spinal cord and brain. While the dying back hypothesis provides a potential framework for understanding the progression of ALS, the exact mechanisms underlying the disease remain complex and not fully understood. In this review, we are positioning the role of extracellular vesicles as new actors in ALS development.</p>","PeriodicalId":73747,"journal":{"name":"Journal of extracellular biology","volume":"3 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11555536/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142634162","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Challenging the conventional wisdom: Re-evaluating Smpd3's role in extracellular vesicle biogenesis 挑战传统智慧:重新评估Smpd3在细胞外囊泡生物生成中的作用
Journal of extracellular biology Pub Date : 2024-11-08 DOI: 10.1002/jex2.70015
Marlies Burgelman, Pieter Dujardin, Anthony Willems, Tino Hochepied, Griet Van Imschoot, Elien Van Wonterghem, Lien Van Hoecke, Charysse Vandendriessche, Roosmarijn E. Vandenbroucke
{"title":"Challenging the conventional wisdom: Re-evaluating Smpd3's role in extracellular vesicle biogenesis","authors":"Marlies Burgelman,&nbsp;Pieter Dujardin,&nbsp;Anthony Willems,&nbsp;Tino Hochepied,&nbsp;Griet Van Imschoot,&nbsp;Elien Van Wonterghem,&nbsp;Lien Van Hoecke,&nbsp;Charysse Vandendriessche,&nbsp;Roosmarijn E. Vandenbroucke","doi":"10.1002/jex2.70015","DOIUrl":"10.1002/jex2.70015","url":null,"abstract":"<p>Extracellular vesicles (EVs) are pivotal in intercellular communication, impacting diverse physiological and pathological processes. Current in vitro EV biogenesis studies often utilize pharmacological inhibitors, inducing off-target effects and overlooking cell-specific production nuances. Addressing these limitations, we utilized CRISPR/Cas9 to generate heterozygous full-body and conditional sphingomyelin phosphodiesterase 3 (Smpd3) knockout (KO) transgenic mice. <i>Smpd3</i>, also known as neutral sphingomyelinase 2 (nSMase2), triggers membrane curvature through sphingomyelin hydrolysis to ceramide, thereby influencing exosome release. Intriguingly, <i>Smpd3</i> deficiency demonstrated no impact on EV release both in vitro and in vivo, underscoring its potential cell-type-specific role in EV biogenesis. Notably, bone marrow derived macrophages (BMDMs) did exhibit reduced EV release upon <i>Alix</i> deletion. Our findings open avenues for subsequent inquiries, enriching our knowledge of EV biogenesis and illuminating intercellular communication in health and disease.</p>","PeriodicalId":73747,"journal":{"name":"Journal of extracellular biology","volume":"3 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-11-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11544639/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142634156","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Proteome characterization of extracellular vesicles from human milk: Uncovering the surfaceome by a lipid-based protein immobilization technology 人乳细胞外囊泡的蛋白质组特征:利用基于脂质的蛋白质固定技术揭示表面组。
Journal of extracellular biology Pub Date : 2024-11-07 DOI: 10.1002/jex2.70020
Emelie Ahlberg, Maria C. Jenmalm, Anders Karlsson, Roger Karlsson, Lina Tingö
{"title":"Proteome characterization of extracellular vesicles from human milk: Uncovering the surfaceome by a lipid-based protein immobilization technology","authors":"Emelie Ahlberg,&nbsp;Maria C. Jenmalm,&nbsp;Anders Karlsson,&nbsp;Roger Karlsson,&nbsp;Lina Tingö","doi":"10.1002/jex2.70020","DOIUrl":"10.1002/jex2.70020","url":null,"abstract":"<p>Breast milk is an essential source of nutrition and hydration for the infant. In addition, this highly complex fluid is rich in extracellular vesicles (EVs). Here, we have applied a microfluidic technology, lipid-based protein immobilization (LPI) and liquid chromatography with tandem mass spectrometry (LC-MS/MS) to characterize the proteome of human milk EVs. Mature milk from six mothers was subjected to EV isolation by ultracentrifugation followed by size exclusion chromatography. Three of the samples were carefully characterized; suggesting a subset enriched by small EVs. The EVs were digested by trypsin in an LPI flow cell and in-solution digestion, giving rise to two fractions of peptides originating from the surface proteome (LPI fraction) or the complete proteome (in-solution digestion). LC-MS/MS recovered peptides corresponding to 582 proteins in the LPI fraction and 938 proteins in the in-solution digested samples; 400 of these proteins were uniquely found in the in-solution digested samples and were hence denoted “cargo proteome”. GeneOntology overrepresentation analysis gave rise to distinctly different functional predictions of the EV surfaceome and the cargo proteome. The surfaceome tends to be overrepresented in functions and components of relevance for the immune system, while the cargo proteome primarily seems to be associated with EV biogenesis.</p>","PeriodicalId":73747,"journal":{"name":"Journal of extracellular biology","volume":"3 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11541861/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142606761","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mechanisms of extracellular vesicle uptake and implications for the design of cancer therapeutics 细胞外囊泡摄取机制及其对癌症疗法设计的影响
Journal of extracellular biology Pub Date : 2024-10-30 DOI: 10.1002/jex2.70017
Stephanie R. Jackson Cullison, Joseph P. Flemming, Kubra Karagoz, Peter J. Wermuth, Mỹ G. Mahoney
{"title":"Mechanisms of extracellular vesicle uptake and implications for the design of cancer therapeutics","authors":"Stephanie R. Jackson Cullison,&nbsp;Joseph P. Flemming,&nbsp;Kubra Karagoz,&nbsp;Peter J. Wermuth,&nbsp;Mỹ G. Mahoney","doi":"10.1002/jex2.70017","DOIUrl":"https://doi.org/10.1002/jex2.70017","url":null,"abstract":"<p>The translation of pre-clinical anti-cancer therapies to regulatory approval has been promising, but slower than hoped. While innovative and effective treatments continue to achieve or seek approval, setbacks are often attributed to a lack of efficacy, failure to achieve clinical endpoints, and dose-limiting toxicities. Successful efforts have been characterized by the development of therapeutics designed to specifically deliver optimal and effective dosing to tumour cells while minimizing off-target toxicity. Much effort has been devoted to the rational design and application of synthetic nanoparticles to serve as targeted therapeutic delivery vehicles. Several challenges to the successful application of this modality as delivery vehicles include the induction of a protracted immune response that results in their rapid systemic clearance, manufacturing cost, lack of stability, and their biocompatibility. Extracellular vesicles (EVs) are a heterogeneous class of endogenous biologically produced lipid bilayer nanoparticles that mediate intercellular communication by carrying bioactive macromolecules capable of modifying cellular phenotypes to local and distant cells. By genetic, chemical, or metabolic methods, extracellular vesicles (EVs) can be engineered to display targeting moieties on their surface while transporting specific cargo to modulate pathological processes following uptake by target cell populations. This review will survey the types of EVs, their composition and cargoes, strategies employed to increase their targeting, uptake, and cargo release, and their potential as targeted anti-cancer therapeutic delivery vehicles.</p>","PeriodicalId":73747,"journal":{"name":"Journal of extracellular biology","volume":"3 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jex2.70017","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142555478","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Choice of blood collection methods influences extracellular vesicles counts and miRNA profiling 血液采集方法的选择会影响细胞外囊泡计数和 miRNA 图谱分析。
Journal of extracellular biology Pub Date : 2024-10-22 DOI: 10.1002/jex2.70008
Vivian Tran, Getulio Pereira de Oliveira-Jr, Stephanie Chidester, Shulin Lu, Michelle L. Pleet, Alexander R. Ivanov, John Tigges, Moua Yang, Steven Jacobson, Maria C. B. Gonçalves, Alec A. Schmaier, Jennifer Jones, Ionita C. Ghiran
{"title":"Choice of blood collection methods influences extracellular vesicles counts and miRNA profiling","authors":"Vivian Tran,&nbsp;Getulio Pereira de Oliveira-Jr,&nbsp;Stephanie Chidester,&nbsp;Shulin Lu,&nbsp;Michelle L. Pleet,&nbsp;Alexander R. Ivanov,&nbsp;John Tigges,&nbsp;Moua Yang,&nbsp;Steven Jacobson,&nbsp;Maria C. B. Gonçalves,&nbsp;Alec A. Schmaier,&nbsp;Jennifer Jones,&nbsp;Ionita C. Ghiran","doi":"10.1002/jex2.70008","DOIUrl":"10.1002/jex2.70008","url":null,"abstract":"<p>Circulating RNAs have been investigated systematically for over 20 years, both as constituents of circulating extracellular vesicles (EVs) or, more recently, non-EV RNA carriers, such as exomeres and supermeres. The high level of variability and low reproducibility rate of EV/extracellular RNA (exRNA) results generated even on the same biofluids promoted several efforts to limit pre-analytical variability by standardizing sample collection and sample preparation, along with instrument validation, setup and calibration. Anticoagulants (ACs) are often chosen based on the initial goal of the study and not necessarily for the later EV and/or exRNA analyses. We show the effects of blood collection on EV size, abundance, and antigenic composition, as well on the miRNAs. Our focus of this work was on the effect of ACs on the number and antigenic composition of circulating EVs and on a set of circulating miRNA species, which were shown to be relevant as disease markers in several cancers and Alzheimer's disease. Results show that while the number of plasma EVs, their relative size, and post-fluorescence labeling profile varied with each AC, their overall antigenic composition, with few exceptions, did not change significantly. However, the number of EVs expressing platelet and platelet-activation markers increased in serum samples. For overall miRNA expression levels, EDTA was a better AC, although this may have been associated with stimulation of cells in the blood collection tube. Citrate and serum rendered better results for a set of miRNAs that were described as circulating markers for Alzheimer's disease, colon, and papillary thyroid cancers.</p>","PeriodicalId":73747,"journal":{"name":"Journal of extracellular biology","volume":"3 10","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11494683/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142514202","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparison of nanoimaging and nanoflow based detection of extracellular vesicles at a single particle resolution 基于纳米成像和纳米流的细胞外囊泡单粒分辨率检测比较
Journal of extracellular biology Pub Date : 2024-10-16 DOI: 10.1002/jex2.70016
Shihan Xu, Zhengrong Zhang, Bridgette C. Melvin, Nibedita Basu Ray, Seiko Ikezu, Tsuneya Ikezu
{"title":"Comparison of nanoimaging and nanoflow based detection of extracellular vesicles at a single particle resolution","authors":"Shihan Xu,&nbsp;Zhengrong Zhang,&nbsp;Bridgette C. Melvin,&nbsp;Nibedita Basu Ray,&nbsp;Seiko Ikezu,&nbsp;Tsuneya Ikezu","doi":"10.1002/jex2.70016","DOIUrl":"https://doi.org/10.1002/jex2.70016","url":null,"abstract":"<p>The characterization of single extracellular vesicle (EV) has been an emerging tool for the early detection of various diseases despite there being challenges regarding how to interpret data with different protocols or instruments. In this work, standard EV particles were characterized for single CD9<sup>+</sup>, single CD81<sup>+</sup> or double CD9<sup>+</sup>/CD81<sup>+</sup> tetraspanin molecule positivity with two single EV analytic technologies in order to optimize their EV sample preparation after antibody labelling and analysis methods: NanoImager for direct stochastic optical reconstruction microscopy (dSTORM)-based EV imaging and characterization, and Flow NanoAnalyzer for flow-based EV quantification and characterization. False positives from antibody aggregates were found during dSTORM-based NanoImager imaging. Analysis of particle radius with lognormal fittings of probability density histogram enabled the removal of antibody aggregates and corrected EV quantification. Furthermore, different machine learning models were trained to differentiate antibody aggregates from EV particles and correct EV quantification with increased double CD9<sup>+</sup>/CD81<sup>+</sup> population. With Flow NanoAnalyzer, EV samples were prepared with different dilution or fractionation methods, which increased the detection rate of CD9<sup>+</sup>/CD81<sup>+</sup> EV population. Comparing the EV phenotype percentages measured by two instruments, differences in double positive and single positive particles existed after percentage correction, which might be due to the different detection limit of each instrument. Our study reveals that the characterization of individual EVs for tetraspanin positivity varies between two platforms—the NanoImager and the Flow NanoAnalyzer—depending on the EV sample preparation methods used after antibody labelling. Additionally, we applied machine learning models to correct for false positive particles identified in imaging-based results by fitting size distribution data.</p>","PeriodicalId":73747,"journal":{"name":"Journal of extracellular biology","volume":"3 10","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jex2.70016","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142443446","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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