Farzad Beizaee, Christian Desrosiers, G. Lodygensky, J. Dolz
{"title":"Harmonizing Flows: Unsupervised MR harmonization based on normalizing flows","authors":"Farzad Beizaee, Christian Desrosiers, G. Lodygensky, J. Dolz","doi":"10.48550/arXiv.2301.11551","DOIUrl":"https://doi.org/10.48550/arXiv.2301.11551","url":null,"abstract":"In this paper, we propose an unsupervised framework based on normalizing flows that harmonizes MR images to mimic the distribution of the source domain. The proposed framework consists of three steps. First, a shallow harmonizer network is trained to recover images of the source domain from their augmented versions. A normalizing flow network is then trained to learn the distribution of the source domain. Finally, at test time, a harmonizer network is modified so that the output images match the source domain's distribution learned by the normalizing flow model. Our unsupervised, source-free and task-independent approach is evaluated on cross-domain brain MRI segmentation using data from four different sites. Results demonstrate its superior performance compared to existing methods.","PeriodicalId":73379,"journal":{"name":"Information processing in medical imaging : proceedings of the ... conference","volume":"33 1","pages":"347-359"},"PeriodicalIF":0.0,"publicationDate":"2023-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89433899","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Wenlong Deng, Yuan Zhong, Qianming Dou, Xiaoxiao Li
{"title":"On Fairness of Medical Image Classification with Multiple Sensitive Attributes via Learning Orthogonal Representations","authors":"Wenlong Deng, Yuan Zhong, Qianming Dou, Xiaoxiao Li","doi":"10.48550/arXiv.2301.01481","DOIUrl":"https://doi.org/10.48550/arXiv.2301.01481","url":null,"abstract":"Mitigating the discrimination of machine learning models has gained increasing attention in medical image analysis. However, rare works focus on fair treatments for patients with multiple sensitive demographic ones, which is a crucial yet challenging problem for real-world clinical applications. In this paper, we propose a novel method for fair representation learning with respect to multi-sensitive attributes. We pursue the independence between target and multi-sensitive representations by achieving orthogonality in the representation space. Concretely, we enforce the column space orthogonality by keeping target information on the complement of a low-rank sensitive space. Furthermore, in the row space, we encourage feature dimensions between target and sensitive representations to be orthogonal. The effectiveness of the proposed method is demonstrated with extensive experiments on the CheXpert dataset. To our best knowledge, this is the first work to mitigate unfairness with respect to multiple sensitive attributes in the field of medical imaging.","PeriodicalId":73379,"journal":{"name":"Information processing in medical imaging : proceedings of the ... conference","volume":"2014 1","pages":"158-169"},"PeriodicalIF":0.0,"publicationDate":"2023-01-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86517512","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Lin Zhao, Hexin Dong, P. Wu, Jiaying Lu, Le Lu, Jingren Zhou, Tianming Liu, Li Zhang, Ling Zhang, Yuxing Tang, C. Zuo
{"title":"MetaViT: Metabolism-Aware Vision Transformer for Differential Diagnosis of Parkinsonism with 18F-FDG PET","authors":"Lin Zhao, Hexin Dong, P. Wu, Jiaying Lu, Le Lu, Jingren Zhou, Tianming Liu, Li Zhang, Ling Zhang, Yuxing Tang, C. Zuo","doi":"10.1007/978-3-031-34048-2_11","DOIUrl":"https://doi.org/10.1007/978-3-031-34048-2_11","url":null,"abstract":"","PeriodicalId":73379,"journal":{"name":"Information processing in medical imaging : proceedings of the ... conference","volume":"70 1","pages":"132-144"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"83827522","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Multi-task Multi-instance Learning for Jointly Diagnosis and Prognosis of Early-Stage Breast Invasive Carcinoma from Whole-Slide Pathological Images","authors":"Jianxin Liu, Rongjun Ge, Peng Wan, Qi Zhu, Daoqiang Zhang, Wei Shao","doi":"10.1007/978-3-031-34048-2_12","DOIUrl":"https://doi.org/10.1007/978-3-031-34048-2_12","url":null,"abstract":"","PeriodicalId":73379,"journal":{"name":"Information processing in medical imaging : proceedings of the ... conference","volume":"328 1","pages":"145-157"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86780283","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Source-Free Domain Adaptation for Medical Image Segmentation via Selectively Updated Mean Teacher","authors":"Ziqi Wen, Xinru Zhang, Chuyang Ye","doi":"10.1007/978-3-031-34048-2_18","DOIUrl":"https://doi.org/10.1007/978-3-031-34048-2_18","url":null,"abstract":"","PeriodicalId":73379,"journal":{"name":"Information processing in medical imaging : proceedings of the ... conference","volume":"1 1","pages":"225-236"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89929870","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Shijie Huang, Geng Chen, Kaicong Sun, Zhiming Cui, Xukun Zhang, P. Xue, Xuan Zhang, He-Xiao Zhang, Dinggang Shen
{"title":"Super-Resolution Reconstruction of Fetal Brain MRI with Prior Anatomical Knowledge","authors":"Shijie Huang, Geng Chen, Kaicong Sun, Zhiming Cui, Xukun Zhang, P. Xue, Xuan Zhang, He-Xiao Zhang, Dinggang Shen","doi":"10.1007/978-3-031-34048-2_33","DOIUrl":"https://doi.org/10.1007/978-3-031-34048-2_33","url":null,"abstract":"","PeriodicalId":73379,"journal":{"name":"Information processing in medical imaging : proceedings of the ... conference","volume":"64 1","pages":"428-441"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80344664","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Shizhan Gong, Cheng Chen, Yuqi Gong, Nga Yan Chan, Wenao Ma, C. Mak, J. Abrigo, Q. Dou
{"title":"Diffusion Model based Semi-supervised Learning on Brain Hemorrhage Images for Efficient Midline Shift Quantification","authors":"Shizhan Gong, Cheng Chen, Yuqi Gong, Nga Yan Chan, Wenao Ma, C. Mak, J. Abrigo, Q. Dou","doi":"10.48550/arXiv.2301.00409","DOIUrl":"https://doi.org/10.48550/arXiv.2301.00409","url":null,"abstract":"Brain midline shift (MLS) is one of the most critical factors to be considered for clinical diagnosis and treatment decision-making for intracranial hemorrhage. Existing computational methods on MLS quantification not only require intensive labeling in millimeter-level measurement but also suffer from poor performance due to their dependence on specific landmarks or simplified anatomical assumptions. In this paper, we propose a novel semi-supervised framework to accurately measure the scale of MLS from head CT scans. We formulate the MLS measurement task as a deformation estimation problem and solve it using a few MLS slices with sparse labels. Meanwhile, with the help of diffusion models, we are able to use a great number of unlabeled MLS data and 2793 non-MLS cases for representation learning and regularization. The extracted representation reflects how the image is different from a non-MLS image and regularization serves an important role in the sparse-to-dense refinement of the deformation field. Our experiment on a real clinical brain hemorrhage dataset has achieved state-of-the-art performance and can generate interpretable deformation fields.","PeriodicalId":73379,"journal":{"name":"Information processing in medical imaging : proceedings of the ... conference","volume":"497 1","pages":"69-81"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81707350","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. Young, Leon M. Aksman, Daniel C. Alexander, P. Wijeratne
{"title":"Subtype and Stage Inference with Timescales","authors":"A. Young, Leon M. Aksman, Daniel C. Alexander, P. Wijeratne","doi":"10.1007/978-3-031-34048-2_2","DOIUrl":"https://doi.org/10.1007/978-3-031-34048-2_2","url":null,"abstract":"","PeriodicalId":73379,"journal":{"name":"Information processing in medical imaging : proceedings of the ... conference","volume":"5 1","pages":"15-26"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80174423","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. Martinot, N. Komodakis, M. Vakalopoulou, N. Bus, C. Robert, É. Deutsch, N. Paragios
{"title":"Differentiable Gamma Index-Based Loss Functions: Accelerating Monte-Carlo Radiotherapy Dose Simulation","authors":"S. Martinot, N. Komodakis, M. Vakalopoulou, N. Bus, C. Robert, É. Deutsch, N. Paragios","doi":"10.1007/978-3-031-34048-2_37","DOIUrl":"https://doi.org/10.1007/978-3-031-34048-2_37","url":null,"abstract":"","PeriodicalId":73379,"journal":{"name":"Information processing in medical imaging : proceedings of the ... conference","volume":"131 1","pages":"485-496"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"77975632","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Antoine Legouhy, Ross Callaghan, H. Azadbakht, Hui Zhang
{"title":"POLAFFINI: Efficient Feature-Based Polyaffine Initialization for Improved Non-linear Image Registration","authors":"Antoine Legouhy, Ross Callaghan, H. Azadbakht, Hui Zhang","doi":"10.1007/978-3-031-34048-2_47","DOIUrl":"https://doi.org/10.1007/978-3-031-34048-2_47","url":null,"abstract":"","PeriodicalId":73379,"journal":{"name":"Information processing in medical imaging : proceedings of the ... conference","volume":"44 1","pages":"614-625"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76684255","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}