Roshan Reddy Upendra, Brian Jamison Wentz, Richard Simon, Suzanne M Shontz, Cristian A Linte
{"title":"CNN-Based Cardiac Motion Extraction to Generate Deformable Geometric Left Ventricle Myocardial Models from Cine MRI.","authors":"Roshan Reddy Upendra, Brian Jamison Wentz, Richard Simon, Suzanne M Shontz, Cristian A Linte","doi":"10.1007/978-3-030-78710-3_25","DOIUrl":"https://doi.org/10.1007/978-3-030-78710-3_25","url":null,"abstract":"<p><p>Patient-specific left ventricle (LV) myocardial models have the potential to be used in a variety of clinical scenarios for improved diagnosis and treatment plans. Cine cardiac magnetic resonance (MR) imaging provides high resolution images to reconstruct patient-specific geometric models of the LV myocardium. With the advent of deep learning, accurate segmentation of cardiac chambers from cine cardiac MR images and unsupervised learning for image registration for cardiac motion estimation on a large number of image datasets is attainable. Here, we propose a deep leaning-based framework for the development of patient-specific geometric models of LV myocardium from cine cardiac MR images, using the Automated Cardiac Diagnosis Challenge (ACDC) dataset. We use the deformation field estimated from the VoxelMorph-based convolutional neural network (CNN) to propagate the isosurface mesh and volume mesh of the end-diastole (ED) frame to the subsequent frames of the cardiac cycle. We assess the CNN-based propagated models against segmented models at each cardiac phase, as well as models propagated using another traditional nonrigid image registration technique. Additionally, we generate dynamic LV myocardial volume meshes at all phases of the cardiac cycle using the log barrier-based mesh warping (LBWARP) method and compare them with the CNN-propagated volume meshes.</p>","PeriodicalId":73120,"journal":{"name":"Functional imaging and modeling of the heart : ... International Workshop, FIMH ..., proceedings. FIMH","volume":"12738 ","pages":"253-263"},"PeriodicalIF":0.0,"publicationDate":"2021-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10198131/pdf/nihms-1899917.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9864805","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mengmeng Kuang, Yinzhe Wu, D. Alonso-'Alvarez, D. Firmin, J. Keegan, P. Gatehouse, Guang-Zhong Yang
{"title":"Three-Dimensional Embedded Attentive RNN (3D-EAR) Segmentor for Left Ventricle Delineation from Myocardial Velocity Mapping","authors":"Mengmeng Kuang, Yinzhe Wu, D. Alonso-'Alvarez, D. Firmin, J. Keegan, P. Gatehouse, Guang-Zhong Yang","doi":"10.1007/978-3-030-78710-3_6","DOIUrl":"https://doi.org/10.1007/978-3-030-78710-3_6","url":null,"abstract":"","PeriodicalId":73120,"journal":{"name":"Functional imaging and modeling of the heart : ... International Workshop, FIMH ..., proceedings. FIMH","volume":"1 1","pages":"55-62"},"PeriodicalIF":0.0,"publicationDate":"2021-04-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89284816","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Efficient Model Monitoring for Quality Control in Cardiac Image Segmentation","authors":"Francesco Galati, Maria A. Zuluaga","doi":"10.1007/978-3-030-78710-3_11","DOIUrl":"https://doi.org/10.1007/978-3-030-78710-3_11","url":null,"abstract":"","PeriodicalId":73120,"journal":{"name":"Functional imaging and modeling of the heart : ... International Workshop, FIMH ..., proceedings. FIMH","volume":"7 1","pages":"101-111"},"PeriodicalIF":0.0,"publicationDate":"2021-04-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81132842","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Judith Zimmermann, Kathrin Baeumler, M. Loecher, T. Cork, Fikunwa O. Kolawole, Kyle Gifford, A. Marsden, D. Fleischmann, D. Ennis
{"title":"Quantitative Hemodynamics in Aortic Dissection: Comparing in Vitro MRI with FSI Simulation in a Compliant Model","authors":"Judith Zimmermann, Kathrin Baeumler, M. Loecher, T. Cork, Fikunwa O. Kolawole, Kyle Gifford, A. Marsden, D. Fleischmann, D. Ennis","doi":"10.1007/978-3-030-78710-3_55","DOIUrl":"https://doi.org/10.1007/978-3-030-78710-3_55","url":null,"abstract":"","PeriodicalId":73120,"journal":{"name":"Functional imaging and modeling of the heart : ... International Workshop, FIMH ..., proceedings. FIMH","volume":"239 1","pages":"575-586"},"PeriodicalIF":0.0,"publicationDate":"2021-02-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"83486949","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jermiah J. Joseph, Ting-Yim Lee, D. Goldman, C. McIntyre, S. Kharche
{"title":"The Role of Extra-Coronary Vascular Conditions that Affect Coronary Fractional Flow Reserve Estimation","authors":"Jermiah J. Joseph, Ting-Yim Lee, D. Goldman, C. McIntyre, S. Kharche","doi":"10.1007/978-3-030-78710-3_57","DOIUrl":"https://doi.org/10.1007/978-3-030-78710-3_57","url":null,"abstract":"","PeriodicalId":73120,"journal":{"name":"Functional imaging and modeling of the heart : ... International Workshop, FIMH ..., proceedings. FIMH","volume":"27 1","pages":"595-604"},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"74698188","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Narimane Gassa, N. Zemzemi, C. Corrado, Y. Coudière
{"title":"Spiral Waves Generation Using an Eikonal-Reaction Cardiac Electrophysiology Model","authors":"Narimane Gassa, N. Zemzemi, C. Corrado, Y. Coudière","doi":"10.1007/978-3-030-78710-3_50","DOIUrl":"https://doi.org/10.1007/978-3-030-78710-3_50","url":null,"abstract":"","PeriodicalId":73120,"journal":{"name":"Functional imaging and modeling of the heart : ... International Workshop, FIMH ..., proceedings. FIMH","volume":"96 1","pages":"523-530"},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"74974067","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
M. Gusseva, Joshua S. Greer, D. Castellanos, Mohamed Abdelghafar Hussein, G. Greil, S. Reddy, T. Hussain, D. Chapelle, R. Chabiniok
{"title":"Model-Assisted Time-Synchronization of Cardiac MR Image and Catheter Pressure Data","authors":"M. Gusseva, Joshua S. Greer, D. Castellanos, Mohamed Abdelghafar Hussein, G. Greil, S. Reddy, T. Hussain, D. Chapelle, R. Chabiniok","doi":"10.1007/978-3-030-78710-3_35","DOIUrl":"https://doi.org/10.1007/978-3-030-78710-3_35","url":null,"abstract":"","PeriodicalId":73120,"journal":{"name":"Functional imaging and modeling of the heart : ... International Workshop, FIMH ..., proceedings. FIMH","volume":"1 1","pages":"362-372"},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"83990401","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Parameter Estimation in a Rule-Based Fiber Orientation Model from End Systolic Strains Using the Reduced Order Unscented Kalman Filter","authors":"L. Barbarotta, P. Bovendeerd","doi":"10.1007/978-3-030-78710-3_33","DOIUrl":"https://doi.org/10.1007/978-3-030-78710-3_33","url":null,"abstract":"","PeriodicalId":73120,"journal":{"name":"Functional imaging and modeling of the heart : ... International Workshop, FIMH ..., proceedings. FIMH","volume":"55 1","pages":"340-350"},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"84597242","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Hao Liu, Harshita Narang, R. Gorman, J. Gorman, M. Sacks
{"title":"On the Interrelationship Between Left Ventricle Infarction Geometry and Ischemic Mitral Regurgitation Grade","authors":"Hao Liu, Harshita Narang, R. Gorman, J. Gorman, M. Sacks","doi":"10.1007/978-3-030-78710-3_41","DOIUrl":"https://doi.org/10.1007/978-3-030-78710-3_41","url":null,"abstract":"","PeriodicalId":73120,"journal":{"name":"Functional imaging and modeling of the heart : ... International Workshop, FIMH ..., proceedings. FIMH","volume":"103 1","pages":"425-434"},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76353282","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Cardiac MRI Left Ventricular Segmentation and Function Quantification Using Pre-trained Neural Networks","authors":"F. Guo, Matthew Ng, I. Roifman, G. Wright","doi":"10.1007/978-3-030-78710-3_5","DOIUrl":"https://doi.org/10.1007/978-3-030-78710-3_5","url":null,"abstract":"","PeriodicalId":73120,"journal":{"name":"Functional imaging and modeling of the heart : ... International Workshop, FIMH ..., proceedings. FIMH","volume":"14 11","pages":"46-54"},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"91493268","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}