Frontiers in soil science最新文献

{"title":"Exploiting crop genotype-specific root-soil interactions to enhance agronomic efficiency","authors":"E. Baggs, Jill E. Cairns, B. Mhlanga, C. Petroli, Jordan Chamberlin, Hannes Karwat, V. Kommerell, C. Thierfelder, Eric Paterson, Manje S. Gowda","doi":"10.3389/fsoil.2023.1125604","DOIUrl":"https://doi.org/10.3389/fsoil.2023.1125604","url":null,"abstract":"Challenges of soil degradation and changing climate pose major threats to food security in many parts of the world, and new approaches are required to close yield and nutrition gaps through enhanced agronomic efficiency. Combined use of mineral fertilizers, organic inputs, improved germplasm and adaptation of these practices to local contexts through improved agronomy can promote efficiency whilst building stocks of soil organic matter (SOM). Within this framework, recent attention has turned to the nature of plant-soil interactions to increase response to mineral fertilizer inputs through utilisation of nutrients from SOM that are replenished through management. This utilisation has been shown in barley and maize to vary with genotype and to be related to root physiological traits associated with rhizodeposition. The identification of candidate genes associated with rhizodeposition takes this a step closer towards the possibility of breeding for sustainability. Here we discuss this potential and feasibility in the context of maize cropping systems, and explore the potential for a combined approach that optimises utilisation of SOM nutrients together with enhanced biological nitrification inhibition to further improve agronomic efficiency.","PeriodicalId":73107,"journal":{"name":"Frontiers in soil science","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45381029","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Cover crops did not improve soil health but hydroclimatology may guide decisions preventing cash crop yield loss","authors":"Debankur Sanyal, A. Mukherjee, A. Rahhal, J. Wolthuizen, D. Karki, J. Clark, A. Bly","doi":"10.3389/fsoil.2023.1111821","DOIUrl":"https://doi.org/10.3389/fsoil.2023.1111821","url":null,"abstract":"Introduction Cover crop (CC) is an essential tool to improve or maintain soil health, potentially improving cash crop productivity. Several recent reports of cash crop yield reduction following cover cropping necessitated this research to guide efficient CC decisions in the season before corn (Zea mays) or soybean (Glycine max) is to be grown. Methods Therefore, we designed this multi-year, multi-location study to include the farmers who plant CC following the harvest of a small grain crop, majorly wheat (Triticum aestivum) or oats (Avena sativa), and then grow corn or soybean cash crop in the subsequent season. We also selected the farmers who used a fall CC mix that was winter-terminated, to avoid further complexities. The major objective of this study was to document soil health changes and cash crop yields following CC in eight selected locations around SD for three consecutive CC seasons between 2017-2020. Experimental plots were laid out at the farmer-cooperators’ CC fields, where no cover (NC) ‘control’ was tested against CC in a randomized complete block design (RCBD). Soil samples were analyzed for selected soil health indicators (SHIs): potentially mineralizable nitrogen (PMN), permanganate oxidizable carbon (POXC), soil respiration (SR), soil microbial biomass (SMB), soil nitrate-nitrogen, soil organic matter (SOM), and other basic soil properties (pH, electrical conductivity, etc.); crop and residue biomass were calculated, and cash crop economic yields were measured. Results and discussion No statistically significant (p<0.05) advantage was found for SHIs or cash crop yields under CC plots compared to NC plots as these fields had healthy soils (long-term no-till was practiced, high SOM levels >30 g kg-1). These findings directed us to investigate hydroclimatological parameters and climatological indices such as accumulated precipitation, standardized precipitation index (SPI), and standardized precipitation-evapotranspiration index (SPEI) for their impact on CC’s influence on cash crop yields. Conclusion Our analyses indicated that hydroclimatology, especially SPEI for the month before CC planting can be used as a tool to guide successful CC decisions, reducing the risk of cash crop yield loss. Further investigations with SPI and SPEI, along with other climatological parameters are needed to explore and design better CC management tools.","PeriodicalId":73107,"journal":{"name":"Frontiers in soil science","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48905037","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Composition and spore abundance of arbuscular mycorrhizal fungi in sweet potato producing areas in Uganda","authors":"R. W. Mukhongo, P. Ebanyat, C. Masso, J. Tumuhairwe","doi":"10.3389/fsoil.2023.1152524","DOIUrl":"https://doi.org/10.3389/fsoil.2023.1152524","url":null,"abstract":"Introduction Farming systems influence composition and abundance of microbial communities. Methodology A study was conducted using morphotyping and enumeration methods to determine the composition and spore abundance of Arbuscular Mycorrhizal Fungi (AMF) in sweet potato producing regions in eastern Uganda. Sampling was done from fields with crop types (CTs) including legumes (groundnuts, common beans, cowpea, soybeans, green grams), sorghum, sweet potato, and fallowed fields which were used as a control. Three agro-ecological zones (AEZs) i.e., Mt. Elgon High Farmlands (MEHF), Lake Victoria Crescent (LVC), and Southern and Eastern Lake Kyoga Basin (SELKB) were considered. Results and discussion A total of 6 AMF genera comprising of Glomus, Acaulospora, Scutellospora, Entrophospora, Archaeospora, and Gigaspora were isolated from the study sites. Agro-ecological zones had a significant (p<0.05) effect on Entrophospora spp. while crop types had a significant (p<0.05) effect on Gigaspora spp. although all the AMF genera were present in all AEZs and CTs. Spore abundance was similar across the AEZs except for MEHF (177) which was lower while spore abundance lowest in sweet potato (177) and largest in fallow (224), attributed to soil properties and similar crops included in the crop rotation program. The AMF can be isolated, identified, and multiplied to produce bioinoculants for the regions.","PeriodicalId":73107,"journal":{"name":"Frontiers in soil science","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43607866","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Fertilizers for food and nutrition security in sub-Saharan Africa: An overview of soil health implications","authors":"C. Dimkpa, W. Adzawla, R. Pandey, W. Atakora, Anselme K. K. Kouame, M. Jemo, P. Bindraban","doi":"10.3389/fsoil.2023.1123931","DOIUrl":"https://doi.org/10.3389/fsoil.2023.1123931","url":null,"abstract":"Sub-Saharan Africa (SSA) faces chronic food insecurity associated with soil degradation and the peculiar aftermath of climate change and exacerbated by rising population and historically poor agricultural practices. Notably, use of mineral fertilizers has the potential to counteract soil degradation in SSA; it drives an increased agricultural production required to feed the rising population while sustaining the quality and health of soils. However, limited financial resources deprive SSA of the promise of fertilizers, wherein application rates are historically low, and regimes are characterized by unbalanced nutrient composition and poor fertilizer quality. Although current global fertilizer use is generally characterized by low efficiency, SSA is most affected due to the already low usage and the quality of available fertilizer products. About 70% of fertilizer-nitrogen is lost through unregulated transformation to ammonia, nitrous oxide, and nitrate that are either volatilized or emitted into the atmosphere or leached into water bodies. Similarly, the preponderance of fertilizer-phosphorus is lost via run-off and leaching, unavailing it to plants while overloading streams and rivers and, together with nitrate, causing eutrophication. These environmental problems are accentuated in SSA where fertilizer quantity and quality issues are already a limiting factor. Notably, recent advances happening outside of SSA indicate that nutrients, when strategically formulated, such as by nano packaging, (bio)polymer encapsulation, and tunable to respond to environmental cues, can provide multiple outcomes, particularly, healthy soils with higher productivity. Therefore, presumably, a proper synthesis of the gamut of soil properties influencing plant nutrient release and availability, options for plant exposure and uptake is critical for realizing these benefits in SSA. Despite these possibilities, there is a lack of deeper context on fertilizer-related issues as they affect food and nutrition security and the health of soils in SSA. This paper provides an overview of the fertilizer-nutrient and associated agronomic, food insecurity and soil environmental challenges and opportunities, which though not exclusive to SSA per se, can be reasoned with the peculiarity of the region. This provides the impetus to increase fertilizer use efficiency, improve soil and environmental health, sustainable crop production, and food and nutrition security in SSA.","PeriodicalId":73107,"journal":{"name":"Frontiers in soil science","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-03-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43296085","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Research trends on biochar-based smart fertilizers as an option for the sustainable agricultural land management: Bibliometric analysis and review","authors":"Waliou A. Abiola, R. Diogo, P. G. Tovihoudji, Abdoul K. Mien, A. Schalla","doi":"10.3389/fsoil.2023.1136327","DOIUrl":"https://doi.org/10.3389/fsoil.2023.1136327","url":null,"abstract":"Several studies have investigated nutrient-enriched and nutrient poor biochar to improve soil properties, increase nutrient use efficiency and crop productivity. Review articles have presented formulations and production methods of biochar-based fertilizers. They reported nutrient-enriched biochar improves -45ves crop productivity, soil health and preserves the environment. But so far, none of the studies has conceptualized the nutrient-enriched biochar as a biochar-based smart fertilizer or presented the conceptual and intellectual structures and the collaborative networks of authors and countries working on biochar-based smart fertilizers. For the first time, this study has mapped the scientific knowledge generated on the topic and established a solid ground for its innovative progress and research pursuits. A total of 2,779 scientific publications on biochar-based fertilizers were exported from scopus database in August 2022 and were analyzed using bibliometrix software package and the biblioshiny web interface in R version 4.1.3. The results indicated that the papers in our collection cover the period from 2007 to 2022 with a raising number from 2017 to 2021. Almost all documents (99.38%) were co-authored with an average of 6 authors (5.76) per article. The analysis of keywords and the evolution of topics revealed that biochar-based smart fertilizers in relation to organic nutrient sources, soil microbiology and soil sanitation were the most studied topics in the scientific debates. China had more collaboration in the network working on biochar-based fertilizers, while the West African countries belonging to the network have not developed any collaboration so far. This suggests the formulation of research projects that may involve African countries to work with other countries including China, USA, Germany, Australia and Poland. This study is more comprehensive in terms of a global view of the conceptual and intellectual contours and network of actors on biochar-based smart fertilizers. Future research on the topic should be conducted more in the fields under farmers’ conditions and may focus on (i) enrichment of biochar with nutrients from organic sources before its application to the soil, (ii) soil remediation and microbiology in relation to biochar-based fertilizer applications, and (iii) economic profitability of biochar fertilizers for small-scale farmers.","PeriodicalId":73107,"journal":{"name":"Frontiers in soil science","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-02-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42886792","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Tracing 33P-labelled organic phosphorus compounds in two soils: New insights into decomposition dynamics and direct use by microbes","authors":"Daniel Wasner, J. Prommer, D. Zezula, M. Mooshammer, Yuntao Hu, W. Wanek","doi":"10.3389/fsoil.2023.1097965","DOIUrl":"https://doi.org/10.3389/fsoil.2023.1097965","url":null,"abstract":"Introduction Organic phosphorus (Po) compounds constitute an important pool in soil P cycling, but their decomposition dynamics are poorly understood. Further, it has never been directly tested whether low molecular weight Po compounds are taken up by soil microbes in an intact form, which reduces the dependence of their P acquisition on extracellular phosphatases. Methods We investigated the short-term fate (24 h) of five 33P-labelled Po compounds (teichoic acids, phospholipids, DNA, RNA and soluble organophosphates) and 33P-labelled inorganic P (Pi) in two soils. Results We found indications that soil microbial breakdown of phosphodiesters was limited by the depolymerization step, and that direct microbial uptake of Po occurred to a substantial extent. Discussion We postulate a trade-off between direct Po uptake and complete extracellular Po mineralization. These findings have profound consequences for our understanding of microbial P cycling in soils.","PeriodicalId":73107,"journal":{"name":"Frontiers in soil science","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-02-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45032600","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Effect of fabric mulch ground covers on lemon trees rhizosphere microbiome in Florida flatwood soils","authors":"J. M. Santiago, J. Fox, Sandra M. Guzmán, Lorenzo Rossi","doi":"10.3389/fsoil.2023.1110370","DOIUrl":"https://doi.org/10.3389/fsoil.2023.1110370","url":null,"abstract":"Introduction The rhizosphere community composition has been shown to provide benefits in nutrient acquisition and plant health. Rhizosphere communities can be heavily influenced by cultural practices in citrus production systems, providing benefits in soil and root health, and plant physiology. Florida growers are implementing new and more sustainable soil management practices, such as using fabric mulch ground covers to improve weed and pest control, while retaining soil moisture. Little is known regarding the influence of these ground covers on the rhizosphere microbial communities of lemon trees, especially under endemic Huanglongbing pressure. Understanding how lemon roots and the rhizosphere microbiome are influenced by fabric mulch ground covers can potentially lead to improved management practices. The aim of this research was to evaluate the effects of fabric mulch ground covers on lemon tree rhizosphere health. Methods The experiment was conducted in a commercial citrus grove located in Fort Pierce, FL, US. Plant material consisted of four-year old lemon trees cv. ‘Meyer’ (Citrus limon) grafted on ‘sour orange’ (Citrus × aurantium) rootstocks. The experiment consisted of two treatments, which included trees grown with fabric mulch ground covers and trees grown without fabric mulch ground covers. Rhizosphere DNA was extracted, sequenced, and analyzed to assess differences in diversity and composition (alpha and beta diversity) of rhizosphere bacteria among treatments. Results and Discussion Obtained results showed that lemon trees treated with fabric mulch ground covers had significantly greater rhizosphere bacterial diversity when compared to the uncovered trees. The presence of fabric mulch ground covers resulted in significantly greater soil Zn, soil Mn, soil temperatures and pH, potentially contributing towards the significant more diverse rhizosphere bacterial commu nity composition compared than those grown without fabric mulch ground covers.","PeriodicalId":73107,"journal":{"name":"Frontiers in soil science","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47526865","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Cadaver imprint on soil chemistry and microbes - Knowns, unknowns, and perspectives","authors":"S. Fiedler, K. Kaiser, B. Fournier","doi":"10.3389/fsoil.2023.1107432","DOIUrl":"https://doi.org/10.3389/fsoil.2023.1107432","url":null,"abstract":"Cadaver-decomposition unleashes an ephemeral pulse of matter input that modifies microbial communities, as well as nutrient pools and fluxes. This leaves behind a measurable imprint on affected soils. However, the persistence of this imprint remains poorly understood. We define cadaver imprint persistence as the entire period between time of cadaver deposition and time when cadaver effects on microbial community structure and chemical indicators are no longer detectable. We present a brief overview of published results on the cadaver-induced changes in the bio-elements carbon, nitrogen and phosphorus, which regulate the structure and functions of the soil microbiome. Based on this, we identified conceptual and methodological gaps and biases and suggest potential research avenues to address them. This will help to better understand the relationships between cadaver-derived matter and microbial taxa and functions, as well as the role of cadaver-decomposition within and across ecosystems. The proposed future research on cadaver-derived imprint on soils has the potential to serve as a hub for connecting soil chemistry, microbial ecology, forensic sciences, and ecosystems science.","PeriodicalId":73107,"journal":{"name":"Frontiers in soil science","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43246086","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Erratum: Precipitation-derived effects on the characteristics of proteinaceous soil organic matter across the continental United States","authors":"","doi":"10.3389/fsoil.2023.1143273","DOIUrl":"https://doi.org/10.3389/fsoil.2023.1143273","url":null,"abstract":"COPYRIGHT © 2023 Frontiers Production Office. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. TYPE Erratum PUBLISHED 14 February 2023 DOI 10.3389/fsoil.2023.1143273","PeriodicalId":73107,"journal":{"name":"Frontiers in soil science","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47101392","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Archaeological soil from Roman occupational layers can be differentiated by microbial and chemical signatures","authors":"G. Taylor, Rhys Williams, H. Halldórsdóttir, Ashleigh Carter, A. Birley, Alexander Meyer, C. Orr","doi":"10.3389/fsoil.2023.1129040","DOIUrl":"https://doi.org/10.3389/fsoil.2023.1129040","url":null,"abstract":"Introduction Soil at the Roman site of Vindolanda (Northumberland, UK) provides excellent preservation of wooden artefacts including Roman writing tablets. Methods In this study we examined chemical and microbial signature changes within varied occupation contexts of archaeological soil. Analysis included investigating elemental composition, sterol biomarkers, bacterial diversity and community structures from excavation trenches at Vindolanda using pXRF, GC-MS and 16S rRNA gene amplicon sequencing. Samples were taken from varying depths starting at topsoil and working down through layers of Roman occupation including one cavalry stable floor, two infantry barracks and a cook house, and layers which contained Roman writing tablets. Results and Discussion The chemical results indicate that areas where wooden artefacts were found had increased soil moisture which was also correlated with specific chemical conditions including shifts in iron, sulphur and phosphorous concentration. Steroid biomarkers indicate the presence of faecal matter in layers, supporting occupation descriptions. Overall microbial diversity did not change across the depth profile but was correlated with soil moisture. Anaerobic soils associated with more optimal preservation differed to other soils with increases in Firmicutes, Proteobacteria, Campilobacterota and Bacteroidota observed. Microbial community structure and putative function as revealed by PICRUSt2 is linked to occupation usage rather than depth of samples with laminated floor layers differing from turf structures. Understanding the complex processes within archaeological soil can help us to understand dynamics of decomposition and preservation. In addition, the apparent preservation of the environmental microbial community as well as the artefacts themselves allows us to understand the microbial environments of the past, how they relate to the present and what this means for our changing environments in the future.","PeriodicalId":73107,"journal":{"name":"Frontiers in soil science","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45186370","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}