Ecologies最新文献

{"title":"Long-Term Changes in Abundance and Composition of Forest-Floor Small Mammal Communities in a Landscape with Cumulative Clearcutting","authors":"T. Sullivan, D. S. Sullivan","doi":"10.3390/ecologies3040032","DOIUrl":"https://doi.org/10.3390/ecologies3040032","url":null,"abstract":"Responses of forest-floor small mammals to clearcutting are species-specific with generalists occupying a range of habitats, and specialists persisting on clearcuts for variable periods. We investigated the responses in abundance and species composition of small mammal communities to cumulative clearcutting of coniferous forests on a landscape that had four independent clearcutting events (Periods 1 to 4) over a 42-year interval from 1979 to 2020 in south-central British Columbia, Canada. We ask if the small mammal communities have changed significantly over these decades owing to removal of old-growth forest by clearcut harvesting. Hypotheses (H) predicted that the small mammal community would (H1) increase in abundance, species richness, and diversity on new clearcuts owing to the availability of early seral post-harvest habitats from cumulative clearcutting; and (H2) have higher mean abundance, species richness, and species diversity in clearcut than uncut forest sites, owing to availability of vegetative food and cover. A third hypothesis (H3) predicted that abundance of (i) early seral vegetation (herbs and shrubs) and (ii) small mammal populations, will be greater in ungrazed clearcut sites than in those grazed by cattle (Bos taurus). Mean total numbers of small mammals on new clearcuts declined in Periods 3 and 4, and hence did not support the abundance part of H1. Much of this decline was owing to low numbers of the long-tailed vole (Microtus longicaudus) and meadow vole (M. pennsylvanicus). Two generalist species: the deer mouse (Peromyscus maniculatus) and northwestern chipmunk (Neotamias amoenus), contributed to high mean species richness and diversity in Periods 2 and 3 before these metrics declined in Period 4, and hence partly supported H1. The similarity in mean total numbers of small mammals in Periods 2 to 4 did not support the abundance prediction of H2 that total numbers would be higher in clearcut than uncut forest sites. Higher mean species richness (Periods 2 and 3) and diversity (Period 3) measurements on clearcut than forest sites, particularly in the early post-harvest years, did support these parts of H2. The vegetation part (i) of H3 was not supported for herbaceous plants but it was for shrubs. The small mammal part (ii) of H3 that populations would be higher in ungrazed than grazed clearcut sites was supported for abundance but not for species richness or diversity. The decline and near disappearance of both species of Microtus was possibly related to the reduction in plant community abundance and structure from grazing (at least for shrubs) and potentially from drought effects associated with climate change. Loss of microtines from these early seral ecosystems may have profound negative effects on various ecological functions and predator communities.","PeriodicalId":72866,"journal":{"name":"Ecologies","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-10-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47588181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Unsupervised Ethograms of a Vulnerable Bird Species: The Red-Footed Falcon in Northern Italy","authors":"A. Ferrarini, M. Gustin","doi":"10.3390/ecologies3040031","DOIUrl":"https://doi.org/10.3390/ecologies3040031","url":null,"abstract":"Behavioral and movement ecology have quickly advanced as a result of the development of biotelemetry devices and analytical techniques. Global positioning system (GPS) transmitters assist scientists in gathering location and movement data at detailed spatial and temporal resolutions. Machine-learning methods can then be applied to GPS data to provide insights into the ecological mechanisms of animal behavior and movements. By means of accurate GPS data-loggers, in 2019, 2020, and 2021, we tracked 8 red-footed falcons at the two largest colonies in Italy. We collected 13,484 GPS points and used recently introduced machine-learning methodology Unsupervised Animal Behaviour Examiner (UABE) to deduce the regular, nested, and hourly ethograms of the tracked individuals. We found clear and significant patterns of the red-footed falcons’ behaviors on monthly, daily, and hourly bases. Our study is a step forward in advancing the knowledge of this threatened species, and provides a baseline assessment of the current behavioral patterns of this red-footed falcon population, with which results of future studies can be compared to detect potential behavioral changes that act as early warnings of increased human disturbance.","PeriodicalId":72866,"journal":{"name":"Ecologies","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43206286","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Localized Placement of Breakwater Reefs Influences Oyster Populations and Their Resilience after Hurricane Harvey","authors":"M. Hanke, Haille Leija, Robert A. S. Laroche, Shailee Modi, Erin Culver-Miller, R. Sanchez, Neha Bobby","doi":"10.3390/ecologies3030030","DOIUrl":"https://doi.org/10.3390/ecologies3030030","url":null,"abstract":"Populations of the eastern oyster (Crassostrea virginica) have been historically declining due to both natural and anthropogenic stressors. In response, oyster reefs have been created with many different approaches. This study utilized intertidal reefs constructed with oyster shells recycled from local restaurants to provide oyster settlement substrate, reef-associated faunal habitat, and a barrier to prevent marsh erosion. The objective of this study was to determine how oyster population characteristics changed over four years (2016–2019) on five different reefs within Sweetwater Lake, Galveston Bay, Texas, with a secondary objective to examine how oyster populations responded after Hurricane Harvey. Over the study period, five different reefs were sampled each summer by removing five bags per reef to determine oyster abundance and size demography. For the three years of the study (2017–2019), we also quantified oyster spat recruitment to the reefs. Oyster abundance and size (shell height) varied interactively by year and reef number, whereas oyster recruitment was significantly lower following Hurricane Harvey and then returned to pre-storm levels. Our results further highlight the importance of reef placement for breakwater-style reefs, as it appears the hydrodynamics within Sweetwater Lake influenced both oyster abundance and size among individual reefs. While the created reefs receive limited larval influx due to the narrow opening between Sweetwater Lake and Galveston Bay proper, this limited connectivity seemed to prevent mass mortality from the freshwater influx from Hurricane Harvey. Therefore, projects creating oyster reefs should consider local and regional landscape factors for the long-term success of oyster populations and robustness to natural disasters.","PeriodicalId":72866,"journal":{"name":"Ecologies","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47647428","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Distributional Trends and Species Richness of Maryland, USA, Stoneflies (Insecta: Plecoptera), with an Emphasis on the Appalachian Region","authors":"Phillip N. Hogan, S. Grubbs","doi":"10.3390/ecologies3030029","DOIUrl":"https://doi.org/10.3390/ecologies3030029","url":null,"abstract":"Faunistic studies of regional biodiversity of aquatic insects are increasing in importance as declines are noted globally. Federal and state government conservation attempts for rare and threatened species are predicated upon the initial research of specialized taxonomists and trained field biologists. The reporting of aquatic insect occurrence data provides a baseline for conservation agencies to compare water quality monitoring studies. Updated field work, literature reviews, and database queries for stoneflies from the mid-Atlantic United States of America state of Maryland necessitated an assessment of species diversity for the state. Seven new state records and one new literature record are presented, bringing the total number of species to 122. Chao1 estimates of species richness are presented for diversity hotspots and the state as a whole, indicating that increased sampling is still necessary to fully understand diversity patterns. Accompanying are assessments of elevation trends and adult presence patterns within nine families. Collections are predominantly restricted to the Appalachian region. Herein, we direct future efforts to focus on understudied regions. An outline of distribution knowledge for species is presented to inform upcoming State Wildlife Action Plans.","PeriodicalId":72866,"journal":{"name":"Ecologies","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-09-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48891171","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Freshwater Invertebrate Assemblage Composition and Water Quality Assessment of an Urban Coastal Watershed in the Context of Land-Use Land-Cover and Reach-Scale Physical Habitat","authors":"N. D. Henderson, A. Christian","doi":"10.3390/ecologies3030028","DOIUrl":"https://doi.org/10.3390/ecologies3030028","url":null,"abstract":"Stream ecosystems provide invaluable ecosystem services but are highly impacted ecosystems in need of water quality monitoring for habitat change impacts. Freshwater macroinvertebrate (FWI) assemblages have been shown to be good indicators of water quality and are known to be vulnerable to land-use land cover (LULC) and other habitat changes. The goal of this case study was to use an existing dominant LULC analysis in the Neponset River watershed, Massachusetts, USA, as LULC sampling treatment groups to deliberately capture the influence of these LULC effects on meso-scale habitat quality, FWI assemblages, and FWI water quality indices at eight sampling reaches. To achieve this goal, we collected physical habitat measurements and FWI samples in the summers of 2010 and 2012 at eight reach-scale stations spread across four previously determined LULC sub-watershed types (forest, residential, industrial, and golf) in the watershed. We expected that LULC change would influence the habitat quality, which would influence the FWI assemblage water quality scores and composition. We also expected that the water quality at these LULC sub-watershed types would be reflected in the FWI assemblage composition. We identified five major findings from our study. Our first finding was that the habitat quality in the Neponset River watershed was somewhat degraded relative to pristine conditions. Our second finding was that our habitat characterization analysis reflected some separation of our reach-scale macrohabitat types at land-use land-cover treatment stations with some correlations with microhabitat variables. Our third finding was that the water quality base on FWI assemblages was generally degraded in reference to pristine conditions. Our fourth finding was that, contrary to our expectations, there was no significant correlation between our reach-scale EPA habitat quality scores and FWI water quality scores. Our fifth finding was that our FWI assemblage NMS showed separation of land-use land-cover sampling stations and that that low pollution-tolerant taxa dominated some of our LULC sampling treatment stations and influenced NMS groupings.","PeriodicalId":72866,"journal":{"name":"Ecologies","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45933950","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Effects of Soil Properties on the Distribution of Woody Plants in Communally Managed Rangelands in Ngaka Modiri Molema District, North-West Province, South Africa","authors":"M. Tiawoun, P. Malan, A. A. Comole","doi":"10.3390/ecologies3030027","DOIUrl":"https://doi.org/10.3390/ecologies3030027","url":null,"abstract":"Soil properties are important drivers of species distribution and community structure in grassland. This study was undertaken to assess the influence of soil properties on woody plant distribution around six selected communally managed rangelands in the District. At each communal rangeland, a total of 25 plots of 20 × 20 m were surveyed to record the density, frequency, and composition of woody species. Soil samples were collected for thirteen soil variables. A Tukey HSD (Tukey’s honestly significant difference) post hoc test was used to compare soil properties and canonical correspondence analysis (CCA) to relate the soil properties to the woody species distribution. The study recorded a total of 17 woody species in 9 families. Fabaceae was the most dominant family, and Senegalia mellifera was the most abundant and frequent encroaching species. Most of the species were native, whereas Prosopis velutina was the only invasive alien species recorded. Senegalia mellifera, P. velutina, and Terminalia sericea were considered the most encroaching in the study sites, with densities exceeding 2000 TE ha-1 (i.e., tree equivalent). CCA results exhibited the strong effect of soil variables on the distribution of woody plant species. CCA ordination analyses showed that K was the most influential soil variable on woody species distributions, followed by Mg, CEC, Na, pH, sand, clay and silt. In terms of woody distribution, the CCA diagram showed similarities between Disaneng, Logageng and Tshidilamolomo. This study provides baseline information on woody species diversity for future management of this ecosystem.","PeriodicalId":72866,"journal":{"name":"Ecologies","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45122339","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Disentangling the Regeneration Niche of Vatica odorata (Griff.) Symington Using Point Pattern Analysis","authors":"Van Thi Nguyen, Francesco Blardoni, Hung Bui Manh, R. Schlicht, S. Wagner","doi":"10.3390/ecologies3030026","DOIUrl":"https://doi.org/10.3390/ecologies3030026","url":null,"abstract":"Seed dispersal and environmental heterogeneity, and the effects of their interaction, are perceived to be determinants of the spatial patterns of trees. We applied the spatial point process to analyse Vatica odorata (Griff.) Symington (Dipterocarpaceae) in Cuc Phuong National Park of Vietnam to understand its spatial patterns, and to decipher the main factors affecting seedling establishment of the species. We established a total of 12 replicated plots, each of which had one or two seed trees in the centre, and recorded all regeneration plants of V. odorata with their positions. A total of 671 regeneration plants were found. Covariates, including canopy, ground cover, and distance to seed trees, were measured on systematic grids of 4 × 4 m. In the context of the spatial point processes, we used a generalised linear mixed model, considering a random effect of the plot. In the model, the greatest distance observed is about 35 m from the seed tree. The canopy and ground cover have a significant impact on the regeneration of the species: The intensity of regenerating stems was greatest with a canopy cover of 70%. The ground cover range for good development of regenerating plants was between 10 and 30%.","PeriodicalId":72866,"journal":{"name":"Ecologies","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43303864","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Dominant Species-Physiognomy-Ecological (DSPE) System for the Classification of Plant Ecological Communities from Remote Sensing Images","authors":"Ram C. Sharma","doi":"10.3390/ecologies3030025","DOIUrl":"https://doi.org/10.3390/ecologies3030025","url":null,"abstract":"This paper presents the Dominant Species-Physiognomy-Ecological (DSPE) classification system developed for large-scale differentiation of plant ecological communities from high-spatial resolution remote sensing images. In this system, the plant ecological communities are defined with the inference of dominant species, physiognomy, and shared ecological settings by incorporating multiple strata. The DSPE system was implemented in a cool-temperate climate zone at a regional scale. The deep recurrent neural networks with bootstrap resampling method were employed for evaluating performance of the DSPE classification using Sentinel-2 images at 10 m spatial resolution. The performance of differentiating DSPE communities was compared with the differentiation of higher, Dominant Genus-Physiognomy-Ecological (DGPE) communities. Overall, there was a small difference in the classification between 58 DSPE communities (F1-score = 85.5%, Kappa coefficient = 84.7%) and 45 DGPE communities (F1-score = 86.5%, Kappa coefficient = 85.7%). However, the class wise accuracy analysis showed that all 58 DSPE communities were differentiated with more than 60% accuracy, whereas more than 70% accuracy was obtained for the classification of all 45 DGPE communities. Since all 58 DSPE communities were classified with more than 60% accuracy, the DSPE classification system was still effective for the differentiation of plant ecological communities from satellite images at a regional scale, indicating its applications in other regions in the world.","PeriodicalId":72866,"journal":{"name":"Ecologies","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48115875","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Investigating Vernal Pool Fairy Shrimp Exposure to Organophosphate Pesticides: Implications for Population-Level Risk Assessment.","authors":"David H Miller,&nbsp;Matthew Etterson,&nbsp;Leah Oliver,&nbsp;Elizabeth Paulukonis,&nbsp;Nathan Pollesch,&nbsp;S Thomas Purucker,&nbsp;D Christopher Rogers,&nbsp;Sumathy Sinnathamby,&nbsp;Sandy Raimondo","doi":"10.3390/ecologies3030024","DOIUrl":"https://doi.org/10.3390/ecologies3030024","url":null,"abstract":"<p><p>Vernal pool fairy shrimp, <i>Branchinecta lynchi</i>, is a freshwater crustacean endemic to California and Oregon, including California's Central Valley. <i>B. lynchi</i> is listed as a Federally Threatened species under the US Endangered Species Act, and as a vulnerable species on the IUCN Red List. Threats that may negatively impact vernal pool fairy shrimp populations include pesticide applications to agricultural land use (e.g., agrochemicals such as organophosphate pesticides) and climate changes that impact vernal pool hydrology. Pop-GUIDE (Population model Guidance, Use, Interpretation, and Development for Ecological risk assessment) is a comprehensive tool that facilitates development and implementation of population models for ecological risk assessment and can be used to document the model derivation process. We employed Pop-GUIDE to document and facilitate the development of a population model for investigating impacts of organophosphate pesticides on vernal pool fairy shrimp populations in California's Central Valley. The resulting model could be applied in combination with field assessment and laboratory-based chemical analysis to link effects from pesticide exposure to adverse outcomes in populations across their range. <i>B. lynchi</i> has a unique intra-annual life cycle that is largely dependent upon environmental conditions. Future deployment of this population model should include complex scenarios consisting of multiple stressors, whereby the model is used to examine scenarios that combine chemical stress resulting from exposure to pesticides and climate changes.</p>","PeriodicalId":72866,"journal":{"name":"Ecologies","volume":"3 ","pages":"308-322"},"PeriodicalIF":0.0,"publicationDate":"2022-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9769362/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9976396","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Ozonized Oleic Acid as a New Viticultural Treatment? Study of the Effect of LIQUENSO® Oxygenate on the Carpoplane Microbial Community and Wine Microorganisms Combining Metabarcoding and In Vitro Assays","authors":"Lea Franziska Stahl, Manon Edo, Timon Nonnenmacher, D. Reif, F. Rex, Pascal Wegmann-Herr, A. Kortekamp, Jochen Fischer-Schuch, E. Thines, M. Scharfenberger-Schmeer","doi":"10.3390/ecologies3030023","DOIUrl":"https://doi.org/10.3390/ecologies3030023","url":null,"abstract":"In this study, an amplicon metagenomic approach was used to determine the effect of repeated treatments with ozonized oleic acid on the microbial community of grapevine carpoplane. Differences in community composition of treated vineyards were compared to non-treated and conventionally treated samples regarding the prokaryotic and eukaryotic microbiome at two developmental stages (BBCH 83, BBCH 87). The results showed effects both on occurrence and on abundance of microorganisms and the community assembly. Wine-relevant genera such as Acetobacter and members of the former genus Lactobacillus could be identified as part of the natural microbiota. The impact of the new viticultural treatment on these organisms was assessed in liquid culture-based microtiter assays. Therefore, we investigated an array of two acetic acid bacteria (AAB), four lactic acid bacteria (LAB) and nine saccharomyces and non-saccharomyces yeasts. Brettanomyces bruxellensis, Saccharomyces cerevisiae, Pediococcus sp. and Acetobacter aceti revealed the highest sensitivities against ozonized oleic acid (LIQUENSO® Oxygenat). Culture growth of these organisms was significantly reduced at an ozonide concentration of 0.25% (v/v), which corresponded to a quarter of the concentration used in the vineyard. The metabarcoding approach in combination with complementary in vitro assays allow new insights into treatment effects on the community and species scale.","PeriodicalId":72866,"journal":{"name":"Ecologies","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49235743","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}