2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)最新文献_第9页

Populating Local Minima in the Protein Conformational Space 填充蛋白质构象空间的局部极小值

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) Pub Date : 2011-11-12 DOI: 10.1109/BIBM.2011.22

Brian S. Olson, Amarda Shehu

引用次数: 16

Brdicka curve — A new source of biomarkers Brdicka曲线——生物标记物的新来源

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) Pub Date : 2011-11-12 DOI: 10.1109/BIBMW.2011.6112374

Lenka Vyslouzilova, V. Adam, Andrea Szabóová, O. Štěpánková, R. Kizek, Jiří Anýž

引用次数: 1

Detection of lobular carcinoma in situ(LCIS) by image analysis 小叶原位癌(LCIS)的影像学检测

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) Pub Date : 2011-11-12 DOI: 10.1109/BIBMW.2011.6112440

Sujin Kim, Desok Kim, H. Choi, H. Joo

引用次数: 1

Using genetic algorithms for the inference of motifs that are represented in only a subset of sequences of interest 使用遗传算法对仅在感兴趣的序列子集中表示的基序进行推理

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) Pub Date : 2011-11-12 DOI: 10.1109/BIBMW.2011.6112539

Jeffrey A. Thompson, C. Congdon

引用次数: 0

An approach to phylogenomic analysis of bacterial pathogens 细菌性病原体的系统发育分析方法

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) Pub Date : 2011-11-12 DOI: 10.1109/BIBMW.2011.6112529

L. Zaslavsky, V. Chetvernin, D. Dernovoy, B. Fedorov, W. Klimke, A. Souvorov, I. Tolstoy, T. Tatusova, D. Lipman

{"title":"An approach to phylogenomic analysis of bacterial pathogens","authors":"L. Zaslavsky, V. Chetvernin, D. Dernovoy, B. Fedorov, W. Klimke, A. Souvorov, I. Tolstoy, T. Tatusova, D. Lipman","doi":"10.1109/BIBMW.2011.6112529","DOIUrl":"https://doi.org/10.1109/BIBMW.2011.6112529","url":null,"abstract":"From the beginning of the microbial genome sequencing era, researchers have shown a commendable commitment to phylogenetic diversity. The completion of one genome from each prokaryotic division or phylum is still a frequently articulated community goal. However, largely because of the interest in human pathogens and advances in sequencing technologies, there are also now a number of very closely related genomes whose organization and gene content can be directly compared. Studying genetic variability of pathogenic bacteria using whole-genome sequencing provides a way to understanding the mechanism of bacterial adaptation to rapid environmental changes and can be a source of useful information on virulence mechanisms. The bacterial genome datasets available in public archives represent a large collection of genome at different levels of sequence quality and assembly. A fast and reliable method of phylogenetic classification based on genome sequences provides a necessary foundation for a more detailed comparative analysis. NCBI has developed an approach of grouping bacterial organisms into phylogenetic clades using a genome dissimilarity measure based on the comparison of universally conserved markers. Special adjustments have been made to compensate for data inaccuracy and incompleteness. Tests performed on complete and draft genomes from phylum Proteobacteria demonstrated that the proposed robust genomic distance allows stable and reliable species-level clustering and can be used for forming phylogenetic clades. Since the tradeoff for the increased robustness of the method is its limited sensitivity at a very fine level, a phylogenomic refinement could be done within each constructed clade when file-level phylogenetic resolution of close genomes is necessary.","PeriodicalId":6345,"journal":{"name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","volume":"16 1","pages":"981-981"},"PeriodicalIF":0.0,"publicationDate":"2011-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82713220","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Wavelet and PCA for Metabolic Network Comparison 小波与PCA在代谢网络比较中的应用

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) Pub Date : 2011-11-12 DOI: 10.1109/BIBM.2011.27

Yong Luo, Yan Zhao, Lei Cheng

引用次数: 0

Ontology Graph Based Query Expansion for Biomedical Information Retrieval 基于本体图的生物医学信息检索查询扩展

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) Pub Date : 2011-11-12 DOI: 10.1109/BIBM.2011.15

Liang Dong, P. Srimani, J. Wang

引用次数: 20

A randomized, controlled study of efficacy and safety on mild to moderate insomnia intervened by Chinese medicine in the integrated program 中医药干预综合治疗轻、中度失眠症疗效及安全性的随机对照研究

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) Pub Date : 2011-11-12 DOI: 10.1109/BIBMW.2011.6112461

Yan Li, Biyun Xu, Shuhui Chen, Peng Liu, A. Ou, Yan Xu, Z. Wen, Biyang Ou, Ruiyu Xu, Zhaozhang Wei, Liang Zeng

{"title":"A randomized, controlled study of efficacy and safety on mild to moderate insomnia intervened by Chinese medicine in the integrated program","authors":"Yan Li, Biyun Xu, Shuhui Chen, Peng Liu, A. Ou, Yan Xu, Z. Wen, Biyang Ou, Ruiyu Xu, Zhaozhang Wei, Liang Zeng","doi":"10.1109/BIBMW.2011.6112461","DOIUrl":"https://doi.org/10.1109/BIBMW.2011.6112461","url":null,"abstract":"To evaluate the effectiveness and safety in mild to moderate insomnia intervened by Chinese Medicine in the integrated program. Methods: Patients(18 to 56 years old) from the Five National Center, who were with mild to moderate insomnia, were randomly divided into two groups according to the central, experimental group: sleep hygiene instruction + balance acupuncture+ Chinese herbal drug; control group: sleep hygiene instruction + minor acupuncture + placebo capsules. PSQI, ISI and PSG were assessed separately after different stages of treatment and follow-up evaluation. Results: (1) Subjective and objective sleep quality: PSQI scores in the 29th days and ISI scores in the 15th days or 29th days of treatment of the experimental group were lower than the control group. PSG parameters of the experimental group were not significantly different before and after treatment. Conclusion: For patients with mild to moderate insomnia, sleep hygiene education, combined with Balance Acupuncture and Bupleurum chinense and fossil fragment and shellfish decoction can improve the subjective sleep.","PeriodicalId":6345,"journal":{"name":"2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","volume":"38 11 1","pages":"732-739"},"PeriodicalIF":0.0,"publicationDate":"2011-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82820955","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 1

Interaction simulation of Lipoxygenase with arachidonate acid using NAMD 用NAMD模拟脂氧合酶与花生四烯酸的相互作用

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) Pub Date : 2011-11-12 DOI: 10.1109/BIBMW.2011.6112525

Zhongwei Li, E. Khosravi, Shuju Bai

引用次数: 0

Automatic Summarization of Results from Clinical Trials 临床试验结果的自动摘要

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) Pub Date : 2011-11-12 DOI: 10.1109/BIBM.2011.72

Rodney L. Summerscales, S. Argamon, Shangda Bai, J. Hupert, A. Schwartz

引用次数: 56