The Journal of Physical Chemistry B最新文献

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Solvation Structure, Ion Association, and Transport in Sodium Glyme Electrolytes: From Monoglyme to Pentaglyme and Binary Mixtures 钠甘氨酸电解质的溶剂化结构、离子缔合和运输:从单甘氨酸到五甘氨酸和二元混合物
IF 3.2 2区 化学
The Journal of Physical Chemistry B Pub Date : 2026-10-08 Epub Date: 2026-09-23 DOI: 10.1021/acs.jpcb.6c05191
Blessing Adeleye, Valeria Bonilla, Orlando Carrillo-Bohórquez, Fedra Leonik, Ryan Jorn, Daniel Kuroda, Revati Kumar
{"title":"Solvation Structure, Ion Association, and Transport in Sodium Glyme Electrolytes: From Monoglyme to Pentaglyme and Binary Mixtures","authors":"Blessing Adeleye,&nbsp;Valeria Bonilla,&nbsp;Orlando Carrillo-Bohórquez,&nbsp;Fedra Leonik,&nbsp;Ryan Jorn,&nbsp;Daniel Kuroda,&nbsp;Revati Kumar","doi":"10.1021/acs.jpcb.6c05191","DOIUrl":"https://doi.org/10.1021/acs.jpcb.6c05191","url":null,"abstract":"<p>Glyme-based electrolyteshave emerged as promising candidates forsodium-ion batteries owing to their ability to form stable solvationstructures around Na<sup>+</sup> via multidentate coordination withether oxygen atoms. While the solvation and transport properties ofsodium bis(trifluoromethanesulfonyl)imide (NaTFSI) in short-chainglymes have been systematically investigated, solutions of pentaglyme(G5) remain poorly understood and, to the best of our knowledge, areunexplored in binary glyme mixtures. Herein, molecular dynamics (MD)simulations are used to investigate the solvation structure, ion association,and transport properties of NaTFSI across six systems: monoglyme (G1),triglyme (G3), and pentaglyme (G5), as well as three binary G1:G3mixtures of varying composition. A combination of experiments andsimulations is employed to provide a comprehensive structural anddynamic characterization, including ionic conductivity, viscosity,van Hove correlation functions, and Walden analysis. The results revealthat G3 preferentially displaces G1 from the Na<sup>+</sup> coordinationshell, even when present in small amounts, thereby generating freeG1 molecules that reduce viscosity in G1-containing systems. Analysisof the Na<sup>+</sup>–Na<sup>+</sup> spatial correlations revealsa glyme-bridged Na<sup>+</sup>–G3–Na<sup>+</sup> structuralmotif unique to G3 and persisting across all G3-containing mixtures.In contrast, G5 exhibits fundamentally different dynamical behaviorfrom G1(0.5):G3(0.5), despite providing the same oxygen-to-Na<sup>+</sup> ratio, displaying the highest viscosity and lowest conductivityamong all systems studied while maintaining long-lived Na<sup>+</sup>-Na<sup>+</sup> structural correlations. Within the binary mixtures,the G1(0.25):G3(0.75) electrolyte achieves the optimal balance, exhibitingthe smallest deviation from the ideal Walden line. These findingsdemonstrate that molecular architecture, as well as chain length,governs electrolyte behavior, providing fundamental insights for therational design of glyme-based sodium-ion battery electrolytes.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":"130 40","pages":"10674–10689"},"PeriodicalIF":3.2,"publicationDate":"2026-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149124886","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Tetrasubstituted Chiral Calix[4]arene Platform for Tunable Chiroptical Detection of d/l-Amino Acids 四取代手性杯芳烃平台可调d/l-氨基酸的热带检测
IF 3.2 2区 化学
The Journal of Physical Chemistry B Pub Date : 2026-10-08 Epub Date: 2026-09-23 DOI: 10.1021/acs.jpcb.6c05294
Zi-Xuan Zhang, Xue-Yao Wang, Zhi-Bo Yang, Jia-Rui Sun, Wen-Hao Pan, Yang Li, Yu-Jiao Ma, Xin-Yue Duan, Ning-Ning Zhang, Kun Liu
{"title":"Tetrasubstituted Chiral Calix[4]arene Platform for Tunable Chiroptical Detection of d/l-Amino Acids","authors":"Zi-Xuan Zhang,&nbsp;Xue-Yao Wang,&nbsp;Zhi-Bo Yang,&nbsp;Jia-Rui Sun,&nbsp;Wen-Hao Pan,&nbsp;Yang Li,&nbsp;Yu-Jiao Ma,&nbsp;Xin-Yue Duan,&nbsp;Ning-Ning Zhang,&nbsp;Kun Liu","doi":"10.1021/acs.jpcb.6c05294","DOIUrl":"https://doi.org/10.1021/acs.jpcb.6c05294","url":null,"abstract":"<p>Detectionof amino acid chirality is important for biomedical applications,yet the direct recognition of underivatized <span>d</span>/<span>l</span>-aminoacids remains challenging because of their subtle stereochemical differences.Herein, we report a pair of upper-rim tetrasubstituted chiral Schiff-basecalix[4]arenes, R-C4A and S-C4A, in which four configurationally identicalphenylglycinol-derived side arms form an intrinsically chiral chromophorearray around the calixarene rim. The hosts translate amino-acid-dependenthost-guest interactions into tunable circular dichroism (CD) signals,enabling the direct differentiation of underivatized <span>d</span>/<span>l</span>-amino acids. Among the amino acids examined, Proline, Phenylalanine,and Tryptophan produce the most pronounced chiroptical responses.Aromatic amino acids and Proline induce CD changes in opposite directions,indicating that side-chain aromaticity, backbone rigidity, and bindinggeometry govern the reorganization and coupling of the upper-rim chromophores.A linear correlation between the CD response and the enantiomericexcess of Proline further enables quantitative analysis of its enantiomericcomposition. Spectroscopic investigations, together with solvent-and metal-ion-dependent modulation, confirm that the chiroptical responsesoriginate from interaction-driven conformational reorganization ofthe Schiff-base side arms. This work establishes an adaptive chiralchromophore-array strategy for direct and solvent-tunable chiropticaldetection of <span>d</span>/<span>l</span>-amino acids.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":"130 40","pages":"10467–10476"},"PeriodicalIF":3.2,"publicationDate":"2026-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149124913","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Liposomes Coloaded with Paclitaxel and Doxorubicin: Analyses of Mechanical Characteristics and Synergistic Cytotoxic Action on Melanoma Cells 与紫杉醇和阿霉素复合的脂质体:对黑色素瘤细胞的力学特性和协同细胞毒性作用的分析
IF 3.2 2区 化学
The Journal of Physical Chemistry B Pub Date : 2026-10-08 Epub Date: 2026-09-25 DOI: 10.1021/acs.jpcb.6c03196
Deepak Kumar, Allikayala Archana, Sanjay Tiwari
{"title":"Liposomes Coloaded with Paclitaxel and Doxorubicin: Analyses of Mechanical Characteristics and Synergistic Cytotoxic Action on Melanoma Cells","authors":"Deepak Kumar,&nbsp;Allikayala Archana,&nbsp;Sanjay Tiwari","doi":"10.1021/acs.jpcb.6c03196","DOIUrl":"https://doi.org/10.1021/acs.jpcb.6c03196","url":null,"abstract":"<p>In this study, we report drug-induced changes in themechanicalproperties of liposomal vesicles. The formulation, composed of <span>l</span>-α-phosphatidylcholine (SPC) and sodium deoxycholate(NaDC), was prepared using the solvent evaporation method. It wasloaded separately with paclitaxel (PLX), doxorubicin (DOX), and thepaclitaxel–doxorubicin (PLX–DOX) combination using thetransmembrane gradient method. The effect of the incorporation ofthese payloads was analyzed by atomic force microscopy (AFM)-based spectroscopic experiments. Changes in the rigidity and Young’smodulus of vesicles were recorded. We observed that drug loading causedmeasurable alterations in the mechanical behavior of vesicles. PLX-loadedvesicles exhibited a greater Young’s modulus than those loadedwith DOX. Overall, drug-induced changes in Young’s moduluscould be ranked as follows: PLX ≥ PLX–DOX &gt; DOX.Anticanceractivity of the formulation was evaluated against B16–F10 melanomacells. Using microscopy and flow cytometry, we show that PLX–DOX-loadedliposomal formulations were efficiently internalized into the cellsand triggered apoptotic death through synergistic action.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":"130 40","pages":"10497–10505"},"PeriodicalIF":3.2,"publicationDate":"2026-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149124948","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Study on the Methyl Viologen-Mediated Electrochemical Reduction of Coenzyme NAD+ in the Triton X-100-Stabilized Methyl tert-Butyl Ether-in-H2O Microemulsion 甲基紫堇素在Triton x -100稳定的甲基叔丁基醚-水微乳液中介导辅酶NAD+的电化学还原研究
IF 3.2 2区 化学
The Journal of Physical Chemistry B Pub Date : 2026-10-08 Epub Date: 2026-09-29 DOI: 10.1021/acs.jpcb.6c04531
Xiaonan Li, Xirong Huang
{"title":"Study on the Methyl Viologen-Mediated Electrochemical Reduction of Coenzyme NAD+ in the Triton X-100-Stabilized Methyl tert-Butyl Ether-in-H2O Microemulsion","authors":"Xiaonan Li,&nbsp;Xirong Huang","doi":"10.1021/acs.jpcb.6c04531","DOIUrl":"https://doi.org/10.1021/acs.jpcb.6c04531","url":null,"abstract":"&lt;p&gt;An oil-in-water microemulsion isan excellent candidatemediumfor the electrochemical regeneration of the coenzyme NADH and itssubsequent coupled conversion application due to its good electricalconductivity and solubilization capacity for hydrophobic substrates.In this work, the reduced methyl viologen (MV&lt;sup&gt;+•&lt;/sup&gt;)-mediatedelectrochemical reduction of coenzyme NAD&lt;sup&gt;+&lt;/sup&gt; was studiedin a Triton X-100 (TX-100)-stabilized methyl &lt;em&gt;tert&lt;/em&gt;-butyl ether (MTBE)-in-water microemulsion. The effects of the surfactantconcentration and the oil content on the electrochemical behaviorof the MV&lt;sup&gt;2+&lt;/sup&gt;/MV&lt;sup&gt;+•&lt;/sup&gt; couple and the activityof diaphorase (DH) were systematically investigated. The results showthat in the microemulsion, the couple exhibits excellent reversibility.Compared with the aqueous buffer system, the couple in the microemulsionsystem has a more positive formal potential and a lower redox peakcurrent, depending on the levels of both the surfactant and the oil.The positive shift of the formal potential is attributed to the stabilizingeffect of the surfactant aggregates on the relatively hydrophobicMV&lt;sup&gt;+•&lt;/sup&gt; species, and the decrease of the redox currentsis ascribed to the decrease of the electroactive area of the electrodedue to the adsorption of the surfactant and the oil as well as thedecrease of the diffusion coefficients of MV species associated withor solubilized in the surfactant aggregates. The activity of DH inthe microemulsion system also depends on the TX-100 concentrationand the MTBE content. Increases in both [TX-100] and [MTBE] resultin a decrease in DH activity. This phenomenon could be explained basedon the [TX-100]/[MTBE]-dependent changes in the local acidity andthe local concentration of the substrate DCPIP in the microemulsions.Based on cyclic voltammetry, the MV&lt;sup&gt;+•&lt;/sup&gt;-mediated electroreductionof NAD&lt;sup&gt;+&lt;/sup&gt; in the TX-100-stabilized MTBE/H&lt;sub&gt;2&lt;/sub&gt;O (0.1M PB, pH = 7.0) microemulsion was studied. For the microemulsion systemcontaining 0.5 mM MV&lt;sup&gt;2+&lt;/sup&gt;, 5 mM NAD&lt;sup&gt;+&lt;/sup&gt;, and 26.6μM DH, when a scan rate of 2 mV s&lt;sup&gt;–1&lt;/sup&gt; was applied,a typical steady-state S-shaped CV curve was obtained. UV–visspectroscopy confirms that the NADH generated by the mediated reactionis bioactive. By coupling the MV&lt;sup&gt;+•&lt;/sup&gt;-mediated NADHelectrochemical regeneration reaction with the horse liver alcoholdehydrogenase (HLADH)-catalyzed reduction of the hydrophobic substrate4-phenyl-2-butanone, the enantiomerically pure (S)-4-phenyl-2-butanolcan be selectively obtained. After 12 h, the yield of the productin the microemulsion is approximately 10 times that in the DMSO-buffermixed homogeneous system. This difference in yield is caused by thedifferences in enzyme activity and stability, as well as in the substratelocal concentration and reactivity in the two systems. The presentstudy indicates that the TX-100-stabilized MTBE-in-water microemulsionis a suitable medium for the electrochemical reg","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":"130 40","pages":"10438–10447"},"PeriodicalIF":3.2,"publicationDate":"2026-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149124964","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Structure and Volumetric Properties of Aqueous 1,4-Dioxane Solutions: Molecular Dynamics Simulation 1,4-二氧六环水溶液的结构和体积性质:分子动力学模拟
IF 3.2 2区 化学
The Journal of Physical Chemistry B Pub Date : 2026-10-08 Epub Date: 2026-09-23 DOI: 10.1021/acs.jpcb.6c03573
Anton V. Vedkal, Evgenii D. Kadtsyn, Nikolai N. Medvedev
{"title":"Structure and Volumetric Properties of Aqueous 1,4-Dioxane Solutions: Molecular Dynamics Simulation","authors":"Anton V. Vedkal,&nbsp;Evgenii D. Kadtsyn,&nbsp;Nikolai N. Medvedev","doi":"10.1021/acs.jpcb.6c03573","DOIUrl":"https://doi.org/10.1021/acs.jpcb.6c03573","url":null,"abstract":"<p>Using molecular dynamics simulations, we investigatestructuralchanges in aqueous 1,4-dioxane solutions over the entire concentrationrange. It is representative of polyesters, whose aqueous solutionsexhibit specific structural features related to their aprotic natureand molecular structure. When constructing the models, we employ asimple method to modify intermolecular interactions in solution byscaling the partial charges on dioxane atoms depending on concentration.The analysis of the models is carried out using both standard methods(the calculation of radial distribution functions, the structure factor,and the analysis of hydrogen bonds) and a new approach that involvescalculating the intrinsic volumes of the solution components. Jointconsideration of the data obtained provides a picture of the structureof this solution and clarifies and complements existing concepts discussedin experimental and theoretical works. We discuss the significantheterogeneity of the water microphase and the relative homogeneityof the dioxane microphase. We also show that the negative excess volumeof the solution is due to a structural property of water.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":"130 40","pages":"10530–10539"},"PeriodicalIF":3.2,"publicationDate":"2026-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149124885","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Collective Microscopic Dynamics in Aqueous LiTFSI from Dilute to Water-in-Salt Electrolytes: Insights from Quadrupolar NMR Relaxation and Molecular Simulations 从稀到盐中水电解质的LiTFSI水溶液的集体微观动力学:来自四极核磁共振弛豫和分子模拟的见解
IF 3.2 2区 化学
The Journal of Physical Chemistry B Pub Date : 2026-10-08 Epub Date: 2026-09-28 DOI: 10.1021/acs.jpcb.6c04931
Marinella de Giovanetti, Matthieu Wolf, Iurii Chubak, Anne-Laure Rollet, Benjamin Rotenberg
{"title":"Collective Microscopic Dynamics in Aqueous LiTFSI from Dilute to Water-in-Salt Electrolytes: Insights from Quadrupolar NMR Relaxation and Molecular Simulations","authors":"Marinella de Giovanetti,&nbsp;Matthieu Wolf,&nbsp;Iurii Chubak,&nbsp;Anne-Laure Rollet,&nbsp;Benjamin Rotenberg","doi":"10.1021/acs.jpcb.6c04931","DOIUrl":"https://doi.org/10.1021/acs.jpcb.6c04931","url":null,"abstract":"<p>The dynamics in electrolytes evolve dramatically withconcentration,from dilute solutions to water-in-salt electrolytes (WISE). NMR relaxationprovides insights into the local collective dynamics around specificnuclei, complementary to macroscopic properties such as conductivityand viscosity, but modeling is necessary to interpret experimentsin terms of microscopic motion. Here, we combine first-principlescalculations, classical molecular dynamics simulations, and experimentalmeasurements to investigate the microscopic origin of the quadrupolarrelaxation of <sup>7</sup>Li<sup>+</sup> in aqueous LiTFSI from diluteto WISE. We show that the strong increase in relaxation rate withconcentration is dominated by a progressive slowing down of electricfield gradient fluctuations at the Li<sup>+</sup> site. While theultrafast inertial contribution to the relaxation remains relativelyunchanged due to the persistent preferential coordination of Li<sup>+</sup> by water over TFSI, the slow collective relaxation mode becomesincreasingly dominant in the concentrated regime. Further analysisreveals the emergence of long-lived dynamics characteristic of stronglycorrelated ionic environments. We show the central role of the bulky,strongly coordinating TFSI anion, which promotes persistent Li–TFSIassociations, reduced ion mobility, and enhanced collective structuralrelaxation. Finally, we assess the relevance of the Stokes–Einstein–Debyemodel and demonstrate the breakdown of the simple hydrodynamic picture.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":"130 40","pages":"10631–10648"},"PeriodicalIF":3.2,"publicationDate":"2026-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149124891","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sensing Viscosity Decoupling and Dynamic Heterogeneity in Tetrabutylammonium Bromide:Polyol Deep Eutectic Solvents 四丁基溴化铵:多元醇深共晶溶剂的传感粘度解耦和动态非均质性
IF 3.2 2区 化学
The Journal of Physical Chemistry B Pub Date : 2026-10-08 Epub Date: 2026-09-23 DOI: 10.1021/acs.jpcb.6c03764
Andrew J. Wendel, Gary A. Baker, G. J. Blanchard
{"title":"Sensing Viscosity Decoupling and Dynamic Heterogeneity in Tetrabutylammonium Bromide:Polyol Deep Eutectic Solvents","authors":"Andrew J. Wendel,&nbsp;Gary A. Baker,&nbsp;G. J. Blanchard","doi":"10.1021/acs.jpcb.6c03764","DOIUrl":"https://doi.org/10.1021/acs.jpcb.6c03764","url":null,"abstract":"<p>We report the reorientationdynamics of the chromophores resorufinand perylene in tetrabutylammonium bromide (TBAB)-based deep eutecticsolvent (DES) systems formed with ethylene glycol (EG), 1,3-propanediol(PD), and 1,4-butanediol (BD) across a series of constituent ratiosfor each DES system. The reorientation dynamics of both chromophoresare largely independent of the bulk viscosity of the DESs, consistentwith viscosity decoupling and dynamic heterogeneity. This behaviorsuggests that the characteristic domains sampled by the chromophoresare larger than their hydrodynamic volumes. For the polar chromophoreresorufin, the results provide evidence for relatively strong interactionswith TBA<sup>+</sup> in the TBAB:PD and TBAB:BD systems, but not inTBAB:EG, suggesting competitive interactions between hydrogen-bond-acceptor-richdomains and hydrogen-bond-donor-rich domains. TBAB-based DESs, therefore,differ from choline chloride-based DESs primarily because TBAB lacksthe primary alcohol functionality present in choline chloride.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":"130 40","pages":"10551–10560"},"PeriodicalIF":3.2,"publicationDate":"2026-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149124849","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Transferable Four-Tier Decision Architecture for Gas Solubility Prediction in Ionic Liquids 离子液体气体溶解度预测的可转移四层决策体系结构
IF 3.2 2区 化学
The Journal of Physical Chemistry B Pub Date : 2026-10-08 Epub Date: 2026-09-23 DOI: 10.1021/acs.jpcb.6c05017
Jiaping Zhou, Yang Lei, Hong Huang, Yuqiu Chen
{"title":"A Transferable Four-Tier Decision Architecture for Gas Solubility Prediction in Ionic Liquids","authors":"Jiaping Zhou,&nbsp;Yang Lei,&nbsp;Hong Huang,&nbsp;Yuqiu Chen","doi":"10.1021/acs.jpcb.6c05017","DOIUrl":"https://doi.org/10.1021/acs.jpcb.6c05017","url":null,"abstract":"<p>We develop a transferable, physics-inspired feature engineeringframework that encodes knowledge of solvation thermodynamics, electrostaticinteractions, free-volume effects, and acid–base chemistrydirectly into the input representation, ensuring that the model learnscausal physical relationships rather than data set-specific artifacts.Through a four-step ablation protocol under GroupKFold cross-validation,where generalization is evaluated on entirely unseen ionic liquid(cation + anion)─gas compositional triplets, we identify aPareto-optimal Thermodynamic + Electrostatic model. Critically, SHAPanalysis reveals that the model has autonomously learned a four-tierdecision architecture that mirrors established physicochemical hierarchies:a thermodynamic baseline, structure-mediated microtuning, an electrostaticbinary switch, and a phase-state classifier. The transferability ofthis architecture was further evaluated through zero-shot generalizationto three entirely unseen gases (C<sub>2</sub>H<sub>4</sub>, SO<sub>2</sub>, and N<sub>2</sub>), which span distinct regions of the physicochemicalinteraction spectrum and extend the evaluation beyond the gas chemistriesrepresented during training.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":"130 40","pages":"10649–10665"},"PeriodicalIF":3.2,"publicationDate":"2026-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149124877","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Residue-Resolved Mechanism for Trapped-Twist Spectral Tuning in Cyanobacteriochromes 蓝细菌中捕获扭曲光谱调谐的残留物分解机制
IF 3.2 2区 化学
The Journal of Physical Chemistry B Pub Date : 2026-10-08 Epub Date: 2026-09-29 DOI: 10.1021/acs.jpcb.6c05208
Shun Kohase, Kazuhiro J. Fujimoto, Rei Narikawa, Takeshi Yanai
{"title":"A Residue-Resolved Mechanism for Trapped-Twist Spectral Tuning in Cyanobacteriochromes","authors":"Shun Kohase,&nbsp;Kazuhiro J. Fujimoto,&nbsp;Rei Narikawa,&nbsp;Takeshi Yanai","doi":"10.1021/acs.jpcb.6c05208","DOIUrl":"https://doi.org/10.1021/acs.jpcb.6c05208","url":null,"abstract":"<p>Cyanobacteriochromes (CBCRs) are bilin-binding photoreceptorsthatphotoconvert between long-lived, thermally stable states; in the red/greensubfamily, photoexcitation converts the red-absorbing P<sub>r</sub> state to the green-absorbing P<sub>g</sub> state with a large blueshift. Here we quantify this P<sub>r</sub>–P<sub>g</sub> separationusing quantum-mechanical/molecular-mechanical geometry optimizationand wave function-based excited-state calculations. Calculated spectrareproduce the P<sub>r</sub>–P<sub>g</sub> trend and show thatthe shift is dominated by a P<sub>g</sub>-specific increase in phycocyanobilinA–B inter-ring torsion, which truncates π-conjugationand widens the HOMO–LUMO gap. Protein electrostatics red-shiftsboth states similarly and thus does not set the P<sub>r</sub>–P<sub>g</sub> gap. Residue–chromophore interaction energies revealstate-dependent rewiring: Trp655 dominates in P<sub>r</sub> and regulatesthe C–D dihedral orientation, whereas in P<sub>g</sub> thisrole shifts to Ile691, and Thr658 becomes a major P<sub>g</sub>-specificstabilizer acting at the A–B linkage. These results establishtrapped-twist tuning as a geometry-driven mechanism with residue-levelhandles for engineering CBCR absorption.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":"130 40","pages":"10455–10466"},"PeriodicalIF":3.2,"publicationDate":"2026-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149124957","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Data-Driven Molecular Design of TFC Membrane Monomers with Reduced PFAS Affinity 降低PFAS亲和度的TFC膜单体的数据驱动分子设计
IF 3.2 2区 化学
The Journal of Physical Chemistry B Pub Date : 2026-10-08 Epub Date: 2026-09-22 DOI: 10.1021/acs.jpcb.6c04561
Yangyang Wu, Shuoshi Liu, Xin Tong
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