Ima FungusPub Date : 2025-05-29eCollection Date: 2025-01-01DOI: 10.3897/imafungus.16.147055
Lowie Tondeleir, Eske De Crop, Tatiana Semenova, Jorinde Nuytinck, André-Ledoux Njouonkou, Atsu Kudzo Guelly, Glen Dierickx, József Geml, Annemieke Verbeken
{"title":"Back to the roots: Uncovering ectomycorrhizal communities across three major African vegetation types.","authors":"Lowie Tondeleir, Eske De Crop, Tatiana Semenova, Jorinde Nuytinck, André-Ledoux Njouonkou, Atsu Kudzo Guelly, Glen Dierickx, József Geml, Annemieke Verbeken","doi":"10.3897/imafungus.16.147055","DOIUrl":"10.3897/imafungus.16.147055","url":null,"abstract":"<p><p>Ectomycorrhizal fungi (EcM) are critical to the health and sustainability of many African ecosystems that include EcM-associated tree species. In Sub-Saharan Africa, three major EcM-dominated vegetation types can be distinguished: the Central African Guineo-Congolian rainforests, the West African Sudanian woodlands and the East African Zambezian Miombo woodlands. While the rainforests feature humid conditions with isolated patches of EcM trees amongst predominantly arbuscular mycorrhizal (AM) communities, the woodlands are characterised by drier soils and more vast continuous areas of EcM trees. We hypothesise that the isolation of EcM tree patches within the rainforest promotes a unique and potentially endemic EcM fungal community, while riparian forests found along rivers in woodland areas may serve as corridors, facilitating the spread of such rare taxa into woodland regions. In this study, we employ root tip metabarcoding combined with Species Hypothesis (SH) matching to characterise the EcM communities across these three vegetation types. Consistent with previous findings from fruit-body surveys and eDNA studies, our results show that <i>Russulaceae</i> is the most abundant EcM clade across all three regions. Other clades reveal greater discrepancy compared to their above-ground abundances, with notably high abundances of <i>Inocybaceae</i>, <i>Thelephoraceae</i> and <i>Sebacinaceae</i>, especially in woodlands. Conversely, <i>Amanitaceae</i> and <i>Boletaceae</i> appear under-represented. Both <i>Boletaceae</i> and <i>Elaphomycetaceae</i> are found to be more prevalent in rainforest and riparian zones, illustrating the unique EcM community of the Guineo-Congolian rainforest. Our findings highlight the corridor potential of riparian areas in facilitating the spread of these rainforest endemics. This suggests that local edaphic and climatic conditions can override broad spatial patterns, such as distance decay, in community structure of African EcM. Moreover, we suggest a stronger effect of EcM host specificity than previously suggested for African fungal communities. Lastly, we assess the level of species-level representation and accuracy of taxonomic annotation of SHs within African <i>Lactifluus</i>. We confirm it to be one of the most thoroughly described and collected fungal genera on the continent, with over 80% of identified SHs represented in our herbarium collections.</p>","PeriodicalId":54345,"journal":{"name":"Ima Fungus","volume":"16 ","pages":"e147055"},"PeriodicalIF":5.2,"publicationDate":"2025-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12142211/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144250872","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ima FungusPub Date : 2025-05-28eCollection Date: 2025-01-01DOI: 10.3897/imafungus.16.155609
Mycological Society Of America Diversity Equity And Inclusion Committee
{"title":"10 years of advancing diversity within the Mycological Society of America.","authors":"Mycological Society Of America Diversity Equity And Inclusion Committee","doi":"10.3897/imafungus.16.155609","DOIUrl":"10.3897/imafungus.16.155609","url":null,"abstract":"<p><p>Like most Science, Technology, Engineering, and Mathematics (STEM) fields, mycology has been dominated by white male scientists, while representation of marginalised groups (<i>e.g.</i>, women, persons from different racial and ethnic groups, persons with disabilities, and members of the LGBTQ+ community) remains low. Here, we discuss diversity, equity, and inclusion in mycology and report on the last decade's efforts to improve diversity in this field. We highlight changes and initiatives implemented by the Mycological Society of America and assess their success. We conclude by making recommendations for the next steps required to achieve non-discrimination and balanced representation in mycology.</p>","PeriodicalId":54345,"journal":{"name":"Ima Fungus","volume":"16 ","pages":"e155609"},"PeriodicalIF":5.2,"publicationDate":"2025-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12138810/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144235961","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ima FungusPub Date : 2025-05-28eCollection Date: 2025-01-01DOI: 10.3897/imafungus.16.147535
Wen-Long Song, Zi-Qiong Jiang, Min Li, Dmytro Leontyev, Yang Gao, Shuang-Lin Chen
{"title":"Comprehensive revision of <i>Lycogala</i> (Myxomycetes) in subtropical China: morphological and phylogenetic insights and ten new species.","authors":"Wen-Long Song, Zi-Qiong Jiang, Min Li, Dmytro Leontyev, Yang Gao, Shuang-Lin Chen","doi":"10.3897/imafungus.16.147535","DOIUrl":"10.3897/imafungus.16.147535","url":null,"abstract":"<p><p>In recent years, significant advancements have been made in the taxonomy and phylogenetics of <i>Lycogala</i>, leading to the description of numerous new species. However, <i>Lycogala</i> in China has never been systematically revised, and only eight species have been recorded. In this study, specimens of <i>Lycogala</i> from 22 sites in 11 provinces or cities of subtropical China were studied in terms of morphology, two-gene phylogenetic analysis (nuclear 18S rDNA and cytochrome oxidase subunit I), and ASAP species delimitation. We provide a checklist, which includes 21 species of <i>Lycogala</i> collected in subtropical China. These species include (1) seven species already known from the country, for which we report new localities, (2) four species, new to China (<i>Lycogalaalisaulianovae</i>, <i>L.fossiculatum</i>, <i>L.skovorodaense</i>, and <i>L.succineum</i>) and (3) ten species new to science, including <i>L.annulatum</i> <b>sp. nov.</b>, <i>L.chinense</i> <b>sp. nov.</b>, <i>L.convexum</i> <b>sp. nov.</b>, <i>L.fasciculovesiculiferum</i> <b>sp. nov.</b>, <i>L.helvolum</i> <b>sp. nov.</b>, <i>L.indirubinum</i> <b>sp. nov.</b>, <i>L.nigrum</i> <b>sp. nov.</b>, <i>L.planovesiculiferum</i> <b>sp. nov.</b>, <i>L.projectum</i> <b>sp. nov.</b>, and <i>L.uviforme</i> <b>sp. nov.</b> A comprehensive morphological description, detailed illustrations, molecular barcoding data, and putative position in phylogenies are provided for the newly described taxa.</p>","PeriodicalId":54345,"journal":{"name":"Ima Fungus","volume":"16 ","pages":"e147535"},"PeriodicalIF":5.2,"publicationDate":"2025-05-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12147522/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144259368","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ima FungusPub Date : 2025-05-23eCollection Date: 2025-01-01DOI: 10.3897/imafungus.16.153782
Ning Jiang, Han Xue, Yong Li
{"title":"Species diversity of <i>Pseudoplagiostoma</i> and <i>Pyrispora</i> (<i>Diaporthales</i>) from <i>Fagaceae</i> hosts in China.","authors":"Ning Jiang, Han Xue, Yong Li","doi":"10.3897/imafungus.16.153782","DOIUrl":"10.3897/imafungus.16.153782","url":null,"abstract":"<p><p><i>Diaporthales</i> is an important fungal order comprising plant-associated pathogens, endophytes, and saprobes in commercial crops and forest trees. Over the past decades, utilizing multiple gene phylogeny has substantially advanced our understanding of taxonomic relationships within this order, leading to the recognition of 35 morphologically and molecularly well-supported families. Among these, Pseudoplagiostoma (Pseudoplagiostomataceae) and Pyrispora (Pyrisporaceae) form two phylogenetically closely related lineages that exhibit distinct morphological characteristics. In this study, we conducted comprehensive morphological and phylogenetic analyses of fungal specimens associated with <i>Fagaceae</i> hosts and proposed four new species and two new combinations: <i>Ps.fagaceaearum</i> <b>sp. nov.</b>, <i>Ps.neocastanopsidis</i> <b>sp. nov.</b>, <i>Ps.quercus</i> <b>sp. nov.</b>, <i>Py.humilis</i> <b>comb. nov.</b>, <i>Py.myracrodruonis</i> <b>comb. nov.</b>, and <i>Py.quercicola</i> <b>sp. nov.</b> Furthermore, based on detailed morphological comparisons and molecular evidence, we synonymized <i>Neoplagiostoma</i> with <i>Pyrispora</i>, <i>Ps.castaneae</i> and <i>N.castaneae</i> with <i>Py.castaneae</i>, <i>Ps.ilicis</i> with <i>Ps.wuyishanense</i> and <i>Ps.diaoluoshanense</i> with <i>Ps.mangiferae</i>. This study provides substantial morphological and molecular data that significantly contribute to our understanding of <i>Pseudoplagiostomataceae</i> and <i>Pyrisporaceae</i>, thereby establishing a robust foundation for future taxonomic revisions and systematic investigations within <i>Diaporthales</i>. The findings not only expand our knowledge of fungal diversity associated with <i>Fagaceae</i> but also enhance our comprehension of evolutionary relationships within these important fungal families.</p>","PeriodicalId":54345,"journal":{"name":"Ima Fungus","volume":"16 ","pages":"e153782"},"PeriodicalIF":5.2,"publicationDate":"2025-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12125602/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144200851","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ima FungusPub Date : 2025-05-23eCollection Date: 2025-01-01DOI: 10.3897/imafungus.16.145658
Yu Quan, Xin Zhou, Ricardo Belmonte-Lopes, Na Li, Retno Wahyuningsih, Anuradha Chowdhary, David L Hawksworth, J Benjamin Stielow, Thomas J Walsh, Sean Zhang, Marcus de Melo Teixeira, Daniel Matute, Sybren de Hoog, Dong Wu
{"title":"Potential predictive value of phylogenetic novelties in clinical fungi, illustrated by <i>Histoplasma</i>.","authors":"Yu Quan, Xin Zhou, Ricardo Belmonte-Lopes, Na Li, Retno Wahyuningsih, Anuradha Chowdhary, David L Hawksworth, J Benjamin Stielow, Thomas J Walsh, Sean Zhang, Marcus de Melo Teixeira, Daniel Matute, Sybren de Hoog, Dong Wu","doi":"10.3897/imafungus.16.145658","DOIUrl":"10.3897/imafungus.16.145658","url":null,"abstract":"<p><p>The phylogeny of the vertebrate pathogen <i>Histoplasmacapsulatum</i> and its varieties was analyzed on the basis of GenBank data, comparing preceding papers that distinguished lineages on the basis of a much smaller dataset, partly dating back two decades. The aim was to establish the predictive value of individual research papers on biodiversity, which eventually may lead to altered nomenclature with large clinical consequences. A total of 1985 sequences of ITS, ARF, OLE and H-anti were downloaded. ITS showed insufficient resolution, and the sequences of the H-anti gene were too short to provide reliable conclusions. Ten major lineages from the seven reports were selected for comparison. Compared to the currently available global data, several earlier studies applied somewhat skewed datasets, biased towards the Americas. Possible separation of Indian and Indonesian lineages were consequently overlooked. Previously distinguished lineages were again recognized, but because of low bootstrap values and extensive genetic exchange, several of these do not deserve species status. No recombination was observed with North American <i>H.mississippiense</i> and <i>H.ohiense</i>. An African clade (var. duboisii) was individualized. Despite its position in close association with South American clades, histopathology and clinical course of this entity underlines that it has other evolutionary drivers. This might also hold true for the North African donkey disease caused by var. farciminosum, although strains analyzed thus far are indistinguishable from South American strains. On the basis of phylogenetic data, Indian and Indonesian clades are separate, but more clinical data are needed to establish their value as individual species.</p>","PeriodicalId":54345,"journal":{"name":"Ima Fungus","volume":"16 ","pages":"e145658"},"PeriodicalIF":5.2,"publicationDate":"2025-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12125600/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144200850","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ima FungusPub Date : 2025-05-23eCollection Date: 2025-01-01DOI: 10.3897/imafungus.16.148070
Mara Ximena Haro-Luna, Felipe Ruan-Soto, Virginia Ramírez-Cruz, Julieta Amaya-Pérez, Laura Guzmán-Dávalos
{"title":"Current use of holy mushrooms of the genus <i>Psilocybe</i> in a Zapotec community in Oaxaca, Mexico.","authors":"Mara Ximena Haro-Luna, Felipe Ruan-Soto, Virginia Ramírez-Cruz, Julieta Amaya-Pérez, Laura Guzmán-Dávalos","doi":"10.3897/imafungus.16.148070","DOIUrl":"10.3897/imafungus.16.148070","url":null,"abstract":"<p><p>The use of psychoactive <i>Psilocybe</i> mushrooms as entheogens by the Mazatecs of Oaxaca became known to the world in 1957. While the Mazatec Region has been the focus of research, historical records indicate that other indigenous groups in Mexico, including the Zapotecs, also used these mushrooms for ceremonial and medicinal purposes. However, the linguistic, cultural and ecological diversity of the Zapotec people suggests that their practices cannot be generalised. In contemporary times, changes in cultural and environmental factors, as well as the rise of psychedelic tourism, have contributed to the transformation and commodification of these traditions. The purpose of this paper was to document the changes in the use, customs and knowledge of <i>Psilocybe</i> species in a Zapotec community in the Valles Centrales of Oaxaca. Through informal in-depth interviews, 30 people from the community of El Peral, San Antonino El Alto were interviewed. These testimonies were recorded in a field diary and entered into a database for categorical analysis. In this way, it was possible to document that the use of <i>Psilocybezapotecorum</i>, called Hongo Borracho or Hongo Santo and in Zapotec Ni'to be'ya, for healing and divinatory purposes, continues in the community. However, its use is decreasing and the mushrooms are more difficult to find, likely due to changing climatic patterns, according to those interviewed. We found that there are still people dedicated to the sale of these mushrooms. For the Zapotecs of El Peral, these mushrooms can do whatever is asked of them according to a ritual, but they are aware that outsiders used them for recreational purposes, although they did not oppose it. This study underscores the importance of documenting and understanding cultural practices related to mushrooms, as well as the need to address environmental challenges that affect their availability and traditional use. Finally, this is the first formal record of the use of <i>Psilocybe</i> mushrooms amongst Zapotecs of the Valles Centrales Region in Oaxaca.</p>","PeriodicalId":54345,"journal":{"name":"Ima Fungus","volume":"16 ","pages":"e148070"},"PeriodicalIF":5.2,"publicationDate":"2025-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12125594/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144200848","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Cryptic host-associated differentiation and diversity: unravelling the evolutionary dynamics of the plant pathogen <i>Lasiodiplodia</i>.","authors":"Ya-Zhu Ko, Huei-Chuan Shih, Meng-Shin Shiao, Yu-Chung Chiang","doi":"10.3897/imafungus.16.147543","DOIUrl":"10.3897/imafungus.16.147543","url":null,"abstract":"<p><p><i>Lasiodiplodia</i>, a genus within the <i>Botryosphaeriaceae</i> family, comprises significant plant pathogens with a broad host range and global distribution, posing a substantial threat to agricultural production. Our recent study revealed the complexity of this genus by identifying numerous potential cryptic species within the seemingly generalist <i>L.theobromae</i>. To fully understand this species' complexity, higher-resolution genetic markers are required. Therefore, this study employed a comprehensive analysis of multiple transferable microsatellite markers to verify <i>Lasiodiplodia</i> species delimitation and examine the fine-scale genetic structure and diversity of <i>Lasiodiplodia</i> species, particularly <i>L.theobromae</i>. The study identified four distinct genetic groups within <i>L.theobromae</i>, each showing high genetic diversity. The phylogenetic relationships of these groups align with the evolutionary history of their host plants. This finding suggests that host-pathogen co-evolution is shaped by shared ancestral variation, limited gene flow, isolation and natural selection. These insights enhance our understanding of managing economically important <i>Lasiodiplodia</i> plant pathogens and highlight the significance of genetic diversity and host preferences in developing effective control measures.</p>","PeriodicalId":54345,"journal":{"name":"Ima Fungus","volume":"16 ","pages":"e147543"},"PeriodicalIF":5.2,"publicationDate":"2025-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12125593/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144200845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ima FungusPub Date : 2025-05-23eCollection Date: 2025-01-01DOI: 10.3897/imafungus.16.145175
Elena Requena, Javier Veloso, Eduardo A Espeso, Inmaculada Larena
{"title":"Hybrid assembly of <i>Penicilliumrubens</i> genomes unveils high conservation of genome structural organisation and the presence of Numts in nuclear DNA.","authors":"Elena Requena, Javier Veloso, Eduardo A Espeso, Inmaculada Larena","doi":"10.3897/imafungus.16.145175","DOIUrl":"10.3897/imafungus.16.145175","url":null,"abstract":"<p><p>The search for highly accurate chromosomal reference genomes has become a primary objective for the fungal research communities. Various genomic events, including insertions, deletions, inversions and movement of transposable elements, can modify the genomic architecture, resulting in chromosomal rearrangements. Long sequence reads enhance the accuracy and reliability of the assembly procedure, facilitating the study of these genomic characteristics. Here, we have utilised a combination of PacBio and Illumina sequencing technologies to generate hybrid assemblies of <i>Penicilliumrubens</i> strains 212 (PO212) and S27. These assemblies were then subjected to a comparative analysis in order to elucidate the chromosomal rearrangements that underpin the observed genomic differences, with a particular focus on their implications in the biocontrol phenotype against phytopathogenic fungi. This approach has enabled us to obtain the assembly of both PO212 and S27 genomes, with each organised into 13 scaffolds. The genomic organisation between these two isolates is highly conserved and the presence of transposable elements between the strains does not reveal major differences. Using the hybrid assemblies, we were able to detect, for the first time in the genus <i>Penicillium</i>, the presence of two nuclear mitochondrial DNA segments (Numts) in the genomes of the PO212 and S27 strains. The differences in biocontrol phenotype displayed by PO212 and S27 strains are independent of their genome organisation. These genomes provide new information for the existing database repositories.</p>","PeriodicalId":54345,"journal":{"name":"Ima Fungus","volume":"16 ","pages":"e145175"},"PeriodicalIF":5.2,"publicationDate":"2025-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12125605/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144200849","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Whole-genome based phylogeny and comparative genomics of Sporidiobolales and related taxa of <i>Basidiomycetes</i>.","authors":"Yuuki Kobayashi, Naoto Tanaka, Minenosuke Matsutani, Yuuna Kurokawa, Keita Aoki, Moriya Ohkuma, Ri-Ichiroh Manabe, Masako Takashima","doi":"10.3897/imafungus.16.141626","DOIUrl":"10.3897/imafungus.16.141626","url":null,"abstract":"<p><p><i>Sporidiobolales</i> is a fungal order of <i>Basidiomycota</i> within the subphylum Pucciniomycotina. This order encompasses significant yeasts, such as the oleaginous species <i>Rhodotorulatoruloides</i> and the opportunistic pathogen <i>R.mucilaginosa</i>. We present the sequencing and comparative analysis of 35 <i>Sporidiobolales</i> strains from 27 species, alongside a <i>Leucosporidium</i> strain (<i>Leucosporidiales</i>), and incorporating publicly available genomic data for related fungi. Based on the phylogenomics data, we found that the topologies obtained were relatively similar and in line with previous reports. A comparison between genomic makeup and previously described phenotypes revealed that the ability to utilize nitrate, raffinose, rhamnose, or sucrose clearly correlated with the existence of key enzymes involved in the corresponding metabolic pathways. However, similar associations could not be established for other carbon sources, such as maltose, galactose, or xylose. We further identified orthologs that are specifically present or absent in each taxon. These results and the genomic sequencing data will help in gaining a better understanding of these non-model yeast species.</p>","PeriodicalId":54345,"journal":{"name":"Ima Fungus","volume":"16 ","pages":"e141626"},"PeriodicalIF":5.2,"publicationDate":"2025-05-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12093110/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144121482","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ima FungusPub Date : 2025-05-07eCollection Date: 2025-01-01DOI: 10.3897/imafungus.16.147558
Jia-Ni Li, Shu Zhang, Yong-Jie Zhang
{"title":"Multi-omics insights into growth and fruiting body development in the entomopathogenic fungus <i>Cordycepsblackwelliae</i>.","authors":"Jia-Ni Li, Shu Zhang, Yong-Jie Zhang","doi":"10.3897/imafungus.16.147558","DOIUrl":"https://doi.org/10.3897/imafungus.16.147558","url":null,"abstract":"<p><p><i>Cordycepsblackwelliae</i> is an entomopathogenic fungus with significant potential for research and development due to its ease of cultivation. However, the lack of omics-based studies has limited our understanding of the molecular mechanisms governing its growth and fruiting body development. This study employed a multi-omics approach, integrating genomic, transcriptomic and metabolomic analyses. Utilising both Illumina and Nanopore sequencing technologies, we assembled a 31.06 Mb nuclear genome comprising 11 scaffolds, with telomere presence at one or both ends in eight scaffolds and annotated 8,138 identified genes (8,136 from genome prediction and two from local BLAST searches). Transcriptomic analysis identified 2,078 differentially expressed genes across three developmental stages: liquid culture mycelia, wheat culture mycelia and fruiting bodies. Amongst these, 745 genes were up-regulated in fruiting bodies, primarily associated with biosynthetic and catabolic pathways. Metabolomic analysis identified 1,161 metabolites, with 1,014 showing significant variations across developmental stages. Integrated transcriptomic and metabolomic analyses uncovered 17 genes positively correlated with 34 metabolites, which are likely crucial regulators of fruiting body development. These findings provide new insights into the molecular networks underlying <i>C.blackwelliae</i> growth and fruiting body formation.</p>","PeriodicalId":54345,"journal":{"name":"Ima Fungus","volume":"16 ","pages":"e147558"},"PeriodicalIF":5.2,"publicationDate":"2025-05-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12079115/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144082076","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}