Journal of Mathematical Neuroscience最新文献

{"title":"M-Current Expands the Range of Gamma Frequency Inputs to Which a Neuronal Target Entrains.","authors":"Yujia Zhou,&nbsp;Theodore Vo,&nbsp;Horacio G Rotstein,&nbsp;Michelle M McCarthy,&nbsp;Nancy Kopell","doi":"10.1186/s13408-018-0068-6","DOIUrl":"https://doi.org/10.1186/s13408-018-0068-6","url":null,"abstract":"<p><p>Theta (4-8 Hz) and gamma (30-80 Hz) rhythms in the brain are commonly associated with memory and learning (Kahana in J Neurosci 26:1669-1672, 2006; Quilichini et al. in J Neurosci 30:11128-11142, 2010). The precision of co-firing between neurons and incoming inputs is critical in these cognitive functions. We consider an inhibitory neuron model with M-current under forcing from gamma pulses and a sinusoidal current of theta frequency. The M-current has a long time constant (∼90 ms) and it has been shown to generate resonance at theta frequencies (Hutcheon and Yarom in Trends Neurosci 23:216-222, 2000; Hu et al. in J Physiol 545:783-805, 2002). We have found that this slow M-current contributes to the precise co-firing between the network and fast gamma pulses in the presence of a slow sinusoidal forcing. The M-current expands the phase-locking frequency range of the network, counteracts the slow theta forcing, and admits bistability in some parameter range. The effects of the M-current balancing the theta forcing are reduced if the sinusoidal current is faster than the theta frequency band. We characterize the dynamical mechanisms underlying the role of the M-current in enabling a network to be entrained to gamma frequency inputs using averaging methods, geometric singular perturbation theory, and bifurcation analysis.</p>","PeriodicalId":54271,"journal":{"name":"Journal of Mathematical Neuroscience","volume":"8 1","pages":"13"},"PeriodicalIF":2.3,"publicationDate":"2018-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s13408-018-0068-6","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36754279","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Stochastic Hybrid Systems in Cellular Neuroscience.","authors":"Paul C Bressloff,&nbsp;James N Maclaurin","doi":"10.1186/s13408-018-0067-7","DOIUrl":"https://doi.org/10.1186/s13408-018-0067-7","url":null,"abstract":"<p><p>We review recent work on the theory and applications of stochastic hybrid systems in cellular neuroscience. A stochastic hybrid system or piecewise deterministic Markov process involves the coupling between a piecewise deterministic differential equation and a time-homogeneous Markov chain on some discrete space. The latter typically represents some random switching process. We begin by summarizing the basic theory of stochastic hybrid systems, including various approximation schemes in the fast switching (weak noise) limit. In subsequent sections, we consider various applications of stochastic hybrid systems, including stochastic ion channels and membrane voltage fluctuations, stochastic gap junctions and diffusion in randomly switching environments, and intracellular transport in axons and dendrites. Finally, we describe recent work on phase reduction methods for stochastic hybrid limit cycle oscillators.</p>","PeriodicalId":54271,"journal":{"name":"Journal of Mathematical Neuroscience","volume":"8 1","pages":"12"},"PeriodicalIF":2.3,"publicationDate":"2018-08-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s13408-018-0067-7","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36420208","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Greedy low-rank algorithm for spatial connectome regression","authors":"P. Kürschner, S. Dolgov, K. Harris, P. Benner","doi":"10.1186/s13408-019-0077-0","DOIUrl":"https://doi.org/10.1186/s13408-019-0077-0","url":null,"abstract":"","PeriodicalId":54271,"journal":{"name":"Journal of Mathematical Neuroscience","volume":"9 1","pages":""},"PeriodicalIF":2.3,"publicationDate":"2018-08-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s13408-019-0077-0","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49115938","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Data Assimilation Methods for Neuronal State and Parameter Estimation.","authors":"Matthew J Moye,&nbsp;Casey O Diekman","doi":"10.1186/s13408-018-0066-8","DOIUrl":"https://doi.org/10.1186/s13408-018-0066-8","url":null,"abstract":"<p><p>This tutorial illustrates the use of data assimilation algorithms to estimate unobserved variables and unknown parameters of conductance-based neuronal models. Modern data assimilation (DA) techniques are widely used in climate science and weather prediction, but have only recently begun to be applied in neuroscience. The two main classes of DA techniques are sequential methods and variational methods. We provide computer code implementing basic versions of a method from each class, the Unscented Kalman Filter and 4D-Var, and demonstrate how to use these algorithms to infer several parameters of the Morris-Lecar model from a single voltage trace. Depending on parameters, the Morris-Lecar model exhibits qualitatively different types of neuronal excitability due to changes in the underlying bifurcation structure. We show that when presented with voltage traces from each of the various excitability regimes, the DA methods can identify parameter sets that produce the correct bifurcation structure even with initial parameter guesses that correspond to a different excitability regime. This demonstrates the ability of DA techniques to perform nonlinear state and parameter estimation and introduces the geometric structure of inferred models as a novel qualitative measure of estimation success. We conclude by discussing extensions of these DA algorithms that have appeared in the neuroscience literature.</p>","PeriodicalId":54271,"journal":{"name":"Journal of Mathematical Neuroscience","volume":"8 1","pages":"11"},"PeriodicalIF":2.3,"publicationDate":"2018-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s13408-018-0066-8","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36382832","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Bifurcations of Limit Cycles in a Reduced Model of the Xenopus Tadpole Central Pattern Generator.","authors":"Andrea Ferrario, Robert Merrison-Hort, Stephen R Soffe, Wen-Chang Li, Roman Borisyuk","doi":"10.1186/s13408-018-0065-9","DOIUrl":"10.1186/s13408-018-0065-9","url":null,"abstract":"<p><p>We present the study of a minimal microcircuit controlling locomotion in two-day-old Xenopus tadpoles. During swimming, neurons in the spinal central pattern generator (CPG) generate anti-phase oscillations between left and right half-centres. Experimental recordings show that the same CPG neurons can also generate transient bouts of long-lasting in-phase oscillations between left-right centres. These synchronous episodes are rarely recorded and have no identified behavioural purpose. However, metamorphosing tadpoles require both anti-phase and in-phase oscillations for swimming locomotion. Previous models have shown the ability to generate biologically realistic patterns of synchrony and swimming oscillations in tadpoles, but a mathematical description of how these oscillations appear is still missing. We define a simplified model that incorporates the key operating principles of tadpole locomotion. The model generates the various outputs seen in experimental recordings, including swimming and synchrony. To study the model, we perform detailed one- and two-parameter bifurcation analysis. This reveals the critical boundaries that separate different dynamical regimes and demonstrates the existence of parameter regions of bi-stable swimming and synchrony. We show that swimming is stable in a significantly larger range of parameters, and can be initiated more robustly, than synchrony. Our results can explain the appearance of long-lasting synchrony bouts seen in experiments at the start of a swimming episode.</p>","PeriodicalId":54271,"journal":{"name":"Journal of Mathematical Neuroscience","volume":"8 1","pages":"10"},"PeriodicalIF":2.3,"publicationDate":"2018-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6051957/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36325372","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"What Is Required for Neuronal Calcium Waves? A Numerical Parameter Study.","authors":"Markus Breit,&nbsp;Gillian Queisser","doi":"10.1186/s13408-018-0064-x","DOIUrl":"https://doi.org/10.1186/s13408-018-0064-x","url":null,"abstract":"<p><p>Neuronal calcium signals propagating by simple diffusion and reaction with mobile and stationary buffers are limited to cellular microdomains. The distance intracellular calcium signals can travel may be significantly increased by means of calcium-induced calcium release from internal calcium stores, notably the endoplasmic reticulum. The organelle, which can be thought of as a cell-within-a-cell, is able to sequester large amounts of cytosolic calcium ions via SERCA pumps and selectively release them into the cytosol through ryanodine receptor channels leading to the formation of calcium waves. In this study, we set out to investigate the basic properties of such dendritic calcium waves and how they depend on the three parameters dendrite radius, ER radius and ryanodine receptor density in the endoplasmic membrane. We demonstrate that there are stable and abortive regimes for calcium waves, depending on the above morphological and physiological parameters. In stable regimes, calcium waves can travel across long dendritic distances, similar to electrical action potentials. We further observe that abortive regimes exist, which could be relevant for spike-timing dependent plasticity, as travel distances and wave velocities vary with changing intracellular architecture. For some of these regimes, analytic functions could be derived that fit the simulation data. In parameter spaces, that are non-trivially influenced by the three-dimensional calcium concentration profile, we were not able to derive such a functional description, demonstrating the mathematical requirement to model and simulate biochemical signaling in three-dimensional space.</p>","PeriodicalId":54271,"journal":{"name":"Journal of Mathematical Neuroscience","volume":"8 1","pages":"9"},"PeriodicalIF":2.3,"publicationDate":"2018-07-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s13408-018-0064-x","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36312105","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Investigating the Correlation-Firing Rate Relationship in Heterogeneous Recurrent Networks.","authors":"Andrea K Barreiro,&nbsp;Cheng Ly","doi":"10.1186/s13408-018-0063-y","DOIUrl":"https://doi.org/10.1186/s13408-018-0063-y","url":null,"abstract":"<p><p>The structure of spiking activity in cortical networks has important implications for how the brain ultimately codes sensory signals. However, our understanding of how network and intrinsic cellular mechanisms affect spiking is still incomplete. In particular, whether cell pairs in a neural network show a positive (or no) relationship between pairwise spike count correlation and average firing rate is generally unknown. This relationship is important because it has been observed experimentally in some sensory systems, and it can enhance information in a common population code. Here we extend our prior work in developing mathematical tools to succinctly characterize the correlation and firing rate relationship in heterogeneous coupled networks. We find that very modest changes in how heterogeneous networks occupy parameter space can dramatically alter the correlation-firing rate relationship.</p>","PeriodicalId":54271,"journal":{"name":"Journal of Mathematical Neuroscience","volume":"8 1","pages":"8"},"PeriodicalIF":2.3,"publicationDate":"2018-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s13408-018-0063-y","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36197547","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Effect of Neuromodulation of Short-term Plasticity on Information Processing in Hippocampal Interneuron Synapses.","authors":"Elham Bayat Mokhtari,&nbsp;J Josh Lawrence,&nbsp;Emily F Stone","doi":"10.1186/s13408-018-0062-z","DOIUrl":"https://doi.org/10.1186/s13408-018-0062-z","url":null,"abstract":"<p><p>Neurons in a micro-circuit connected by chemical synapses can have their connectivity affected by the prior activity of the cells. The number of synapses available for releasing neurotransmitter can be decreased by repetitive activation through depletion of readily releasable neurotransmitter (NT), or increased through facilitation, where the probability of release of NT is increased by prior activation. These competing effects can create a complicated and subtle range of time-dependent connectivity. Here we investigate the probabilistic properties of facilitation and depression (FD) for a presynaptic neuron that is receiving a Poisson spike train of input. We use a model of FD that is parameterized with experimental data from a hippocampal basket cell and pyramidal cell connection, for fixed frequency input spikes at frequencies in the range of theta (3-8 Hz) and gamma (20-100 Hz) oscillations. Hence our results will apply to micro-circuits in the hippocampus that are responsible for the interaction of theta and gamma rhythms associated with learning and memory. A control situation is compared with one in which a pharmaceutical neuromodulator (muscarine) is employed. We apply standard information-theoretic measures such as entropy and mutual information, and find a closed form approximate expression for the probability distribution of release probability. We also use techniques that measure the dependence of the response on the exact history of stimulation the synapse has received, which uncovers some unexpected differences between control and muscarine-added cases.</p>","PeriodicalId":54271,"journal":{"name":"Journal of Mathematical Neuroscience","volume":"8 1","pages":"7"},"PeriodicalIF":2.3,"publicationDate":"2018-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s13408-018-0062-z","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36174255","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Analysis of an Attractor Neural Network's Response to Conflicting External Inputs.","authors":"Kathryn Hedrick, Kechen Zhang","doi":"10.1186/s13408-018-0061-0","DOIUrl":"10.1186/s13408-018-0061-0","url":null,"abstract":"<p><p>The theory of attractor neural networks has been influential in our understanding of the neural processes underlying spatial, declarative, and episodic memory. Many theoretical studies focus on the inherent properties of an attractor, such as its structure and capacity. Relatively little is known about how an attractor neural network responds to external inputs, which often carry conflicting information about a stimulus. In this paper we analyze the behavior of an attractor neural network driven by two conflicting external inputs. Our focus is on analyzing the emergent properties of the megamap model, a quasi-continuous attractor network in which place cells are flexibly recombined to represent a large spatial environment. In this model, the system shows a sharp transition from the winner-take-all mode, which is characteristic of standard continuous attractor neural networks, to a combinatorial mode in which the equilibrium activity pattern combines embedded attractor states in response to conflicting external inputs. We derive a numerical test for determining the operational mode of the system a priori. We then derive a linear transformation from the full megamap model with thousands of neurons to a reduced 2-unit model that has similar qualitative behavior. Our analysis of the reduced model and explicit expressions relating the parameters of the reduced model to the megamap elucidate the conditions under which the combinatorial mode emerges and the dynamics in each mode given the relative strength of the attractor network and the relative strength of the two conflicting inputs. Although we focus on a particular attractor network model, we describe a set of conditions under which our analysis can be applied to more general attractor neural networks.</p>","PeriodicalId":54271,"journal":{"name":"Journal of Mathematical Neuroscience","volume":"8 1","pages":"6"},"PeriodicalIF":2.3,"publicationDate":"2018-05-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5955911/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36103800","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Saddle Slow Manifolds and Canard Orbits in [Formula: see text] and Application to the Full Hodgkin-Huxley Model.","authors":"Cris R Hasan, Bernd Krauskopf, Hinke M Osinga","doi":"10.1186/s13408-018-0060-1","DOIUrl":"10.1186/s13408-018-0060-1","url":null,"abstract":"<p><p>Many physiological phenomena have the property that some variables evolve much faster than others. For example, neuron models typically involve observable differences in time scales. The Hodgkin-Huxley model is well known for explaining the ionic mechanism that generates the action potential in the squid giant axon. Rubin and Wechselberger (Biol. Cybern. 97:5-32, 2007) nondimensionalized this model and obtained a singularly perturbed system with two fast, two slow variables, and an explicit time-scale ratio ε. The dynamics of this system are complex and feature periodic orbits with a series of action potentials separated by small-amplitude oscillations (SAOs); also referred to as mixed-mode oscillations (MMOs). The slow dynamics of this system are organized by two-dimensional locally invariant manifolds called slow manifolds which can be either attracting or of saddle type.In this paper, we introduce a general approach for computing two-dimensional saddle slow manifolds and their stable and unstable fast manifolds. We also develop a technique for detecting and continuing associated canard orbits, which arise from the interaction between attracting and saddle slow manifolds, and provide a mechanism for the organization of SAOs in [Formula: see text]. We first test our approach with an extended four-dimensional normal form of a folded node. Our results demonstrate that our computations give reliable approximations of slow manifolds and canard orbits of this model. Our computational approach is then utilized to investigate the role of saddle slow manifolds and associated canard orbits of the full Hodgkin-Huxley model in organizing MMOs and determining the firing rates of action potentials. For ε sufficiently large, canard orbits are arranged in pairs of twin canard orbits with the same number of SAOs. We illustrate how twin canard orbits partition the attracting slow manifold into a number of ribbons that play the role of sectors of rotations. The upshot is that we are able to unravel the geometry of slow manifolds and associated canard orbits without the need to reduce the model.</p>","PeriodicalId":54271,"journal":{"name":"Journal of Mathematical Neuroscience","volume":"8 1","pages":"5"},"PeriodicalIF":2.3,"publicationDate":"2018-04-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s13408-018-0060-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36026605","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}