Marine Life Science & Technology最新文献

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Potential roles of the sirtuins in promoting longevity for larger Argopecten scallops. sirtuins在促进大型Argopecten扇贝寿命方面的潜在作用。
IF 5.8 2区 生物学
Marine Life Science & Technology Pub Date : 2025-03-04 eCollection Date: 2025-05-01 DOI: 10.1007/s42995-024-00269-3
Yang Zhao, Junhao Ning, Yuan Wang, Guilong Liu, Xin Xu, Chunde Wang, Xia Lu
{"title":"Potential roles of the sirtuins in promoting longevity for larger <i>Argopecten</i> scallops.","authors":"Yang Zhao, Junhao Ning, Yuan Wang, Guilong Liu, Xin Xu, Chunde Wang, Xia Lu","doi":"10.1007/s42995-024-00269-3","DOIUrl":"10.1007/s42995-024-00269-3","url":null,"abstract":"<p><p>Annual bay scallops are commercially significant bivalve species for fisheries and aquaculture, but their small size and severe inbreeding depression impede the development of their industry. Some interspecific hybrids of bay scallops and peruvian scallops show longer lifespans and significantly greater sizes, which may result from the longevity genes in the latter (7-10 years). Sirtuins (<i>SIRTs</i>) play pivotal roles in the genetic control of aging in various model species and human beings. However, the role of <i>SIRTs</i> in longevity has not been systematically studied in aquatic animals. In this study, different gene numbers, sequences, structures and tandem duplications of <i>SIRTs</i> were first identified between the two scallops through genome-wide analysis. Cloning and characteristics of the <i>SIRT1</i> and <i>SIRT6</i> ORFs revealed dramatic variations in amino acids between the two scallops, which may cause intrinsic differences in function for longevity regulation. In particular, the amino acid variations in the N-terminus may auto-regulate conformations, causing intrinsic differences in catalytic activity for longevity regulation. The robust expression of <i>SIRT1</i> and <i>SIRT6-2</i> in peruvian scallops suggested they may exert a role in extending the lifespan. Nutrient restriction (NR) could promote lifespan in terrestrial model organisms, and the <i>SIRTs</i> and their related genes responded to NR for longevity in scallops; peruvian scallops showed a higher ability of autophagy. This study provides potential biomarkers for breeding long-lived larger scallop hybrids for the sustainability of aquaculture. Moreover, the genetic variation during evolution in the two scallops provides a foundation for further research on the longevity function of the <i>SIRTs</i>.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s42995-024-00269-3.</p>","PeriodicalId":53218,"journal":{"name":"Marine Life Science & Technology","volume":"7 2","pages":"284-301"},"PeriodicalIF":5.8,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12102419/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144144218","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Macrophage and mitochondrion dual-targeting astaxanthin nanoparticles prepared by Maillard reaction for colonic inflammation alleviation. Maillard反应制备巨噬细胞和线粒体双靶向虾青素纳米颗粒缓解结肠炎症。
IF 5.8 2区 生物学
Marine Life Science & Technology Pub Date : 2025-02-17 eCollection Date: 2025-05-01 DOI: 10.1007/s42995-024-00255-9
Kangjing Liu, Xueying Tian, Siyuan Fei, Yukun Song, A M Abd El-Aty, Mingqian Tan
{"title":"Macrophage and mitochondrion dual-targeting astaxanthin nanoparticles prepared by Maillard reaction for colonic inflammation alleviation.","authors":"Kangjing Liu, Xueying Tian, Siyuan Fei, Yukun Song, A M Abd El-Aty, Mingqian Tan","doi":"10.1007/s42995-024-00255-9","DOIUrl":"10.1007/s42995-024-00255-9","url":null,"abstract":"<p><p>This study demonstrated the design of whey protein isolate (WPI)-mannose (Man) conjugates with triphenylphosphonium bromide (TPP) through self-assembly to prepare macrophage and mitochondrion dual-targeting astaxanthin (AXT) nanoparticles (AXT@TPP-WPI-Man). The nanoparticles displayed spherical structures with a well-dispersed size of approximately 206.1 ± 39.2 nm, with good biocompatibility, stability, and targeting capabilities. In vitro experiments demonstrated the specific accumulation of AXT@TPP-WPI-Man in mitochondria and exhibited good targeting ability toward macrophages. The AXT@TPP-WPI-Man effectively reduced reactive oxygen species and preserved the normal mitochondrial membrane potential. The AXT@TPP-WPI-Man treated ulcerative colitis mice exhibited a 52.32% increase in colon length with significant improvement in weight loss, disease activity index scores, and reduced release of inflammatory cytokines. Immunofluorescence staining indicated AXT@TPP-WPI-Man alleviated ulcerative colitis by reducing M1 polarization in colonic macrophages while promoting M2 polarization. The dual-targeting AXT@TPP-WPI-Man has the potential to improve astaxanthin bioavailability, presenting a promising delivery method for the treatment of ulcerative colitis.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s42995-024-00255-9.</p>","PeriodicalId":53218,"journal":{"name":"Marine Life Science & Technology","volume":"7 2","pages":"352-365"},"PeriodicalIF":5.8,"publicationDate":"2025-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12102426/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144144490","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular mechanisms of Mmd2 gene in regulating growth of the Pacific white shrimp Litopenaeus vannamei. Mmd2基因调控凡纳滨对虾生长的分子机制
IF 5.8 2区 生物学
Marine Life Science & Technology Pub Date : 2025-02-15 eCollection Date: 2025-02-01 DOI: 10.1007/s42995-024-00273-7
Shuqing Si, Xiaojun Zhang, Yang Yu, Xiaoyun Zhong, Xiaoxi Zhang, Jianbo Yuan, Ka Hou Chu, Fuhua Li
{"title":"Molecular mechanisms of Mmd2 gene in regulating growth of the Pacific white shrimp <i>Litopenaeus vannamei</i>.","authors":"Shuqing Si, Xiaojun Zhang, Yang Yu, Xiaoyun Zhong, Xiaoxi Zhang, Jianbo Yuan, Ka Hou Chu, Fuhua Li","doi":"10.1007/s42995-024-00273-7","DOIUrl":"https://doi.org/10.1007/s42995-024-00273-7","url":null,"abstract":"<p><p>Growth of the Pacific white shrimp <i>Litopenaeus vannamei</i>, the most important farmed crustacean, has consistently been a focal point for breeders. Over the past decades, some candidate genes for shrimp growth have been identified. However, further research is needed to elucidate the molecular regulatory mechanism of these genes. <i>LvMmd2</i> was previously identified as a candidate gene that may inhibit the growth of <i>L. vannamei</i>. In this study, we analyzed the genotype and expression of the <i>LvMmd2</i> gene in a breeding family and indicated its role as a growth-inhibiting gene. We found that LvMmd2 co-localized with its homolog LvPAQR3 at the Golgi apparatus. Using co-immunoprecipitation (Co-IP) and DUAL membrane system yeast two-hybrid (MbY2H), we indicated the interactions between LvMmd2 and LvPAQR3, LvPAQR3 and LvRaf1, as well as LvMmd2 and LvRho. These results suggest that <i>LvMmd2</i> directly and indirectly regulates the Ras signaling pathway. Furthermore, we show that the <i>LvMmd2</i> gene may indirectly affect the PI3K/AKT, insulin, and Hippo signaling pathways to regulate cell proliferation and differentiation via LvPAQR3 and LvRaf1. Through transcriptome and MbY2H analyses, we have also revealed the interaction between LvMmd2 and proteins involved in growth, immunity, protein transport, synthesis, and modification. These findings demonstrate the various molecular pathways through which <i>LvMmd2</i> regulates <i>L. vannamei</i> growth. This study provides insights into the mechanism of shrimp growth regulated by <i>Mmd2</i>, enhances our understanding of <i>LvMmd2</i> function, and highlights its potential application in shrimp breeding.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s42995-024-00273-7.</p>","PeriodicalId":53218,"journal":{"name":"Marine Life Science & Technology","volume":"7 1","pages":"50-65"},"PeriodicalIF":5.8,"publicationDate":"2025-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11871217/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143544511","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Insights into the recognition mechanism of shark-derived single-domain antibodies with high affinity and specificity targeting fluoroquinolones. 针对氟喹诺酮类药物的鲨鱼源性高亲和力和特异性单域抗体识别机制的研究。
IF 5.8 2区 生物学
Marine Life Science & Technology Pub Date : 2025-02-13 eCollection Date: 2025-05-01 DOI: 10.1007/s42995-024-00277-3
Chang Liu, Guoqiang Li, Yuan Chen, Hong Lin, Limin Cao, Kaiqiang Wang, Xiudan Wang, Martin F Flajnik, Jianxin Sui
{"title":"Insights into the recognition mechanism of shark-derived single-domain antibodies with high affinity and specificity targeting fluoroquinolones.","authors":"Chang Liu, Guoqiang Li, Yuan Chen, Hong Lin, Limin Cao, Kaiqiang Wang, Xiudan Wang, Martin F Flajnik, Jianxin Sui","doi":"10.1007/s42995-024-00277-3","DOIUrl":"10.1007/s42995-024-00277-3","url":null,"abstract":"<p><p>In this study, we investigated the molecular recognition mechanisms of shark-derived single-domain antibodies (ssdAbs) targeting fluoroquinolones using an integrated approach that combines in silico homologous modeling, molecular dynamics simulations, molecular docking, and alanine scanning mutagenesis. Three ssdAbs-2E6, 1N9, and 1O17-specific to enrofloxacin, norfloxacin, and ofloxacin, respectively, were selected based on previous work. Through AlphaFold2 and GalaxyWEB, the protein structures of these ssdAbs were predicted and optimized, followed by molecular dynamics simulations to emulate realistic protein behavior in a solvent environment. Molecular docking, alanine scanning mutagenesis, and subsequent verifications identified 30N and 93W of 2E6; 30N, 89R, 98Y, and 99D of 1N9; 100W and 101R of 1O17, all located within the complementarity determining region 3 loop, as critical for antigen binding. These residues primarily interact with their targets through hydrogen bonds, salt bridges, π-π stackings, and cation-π interactions. This study revealed, for the first time, the binding mechanism of ssdAbs to fluoroquinolones from a theoretical perspective, emphasizing the importance of aromatic and polar residues in recognizing characteristic epitopes, such as the carboxyl group at the C3 position and the 1-piperazinyl group at the C7 position. Our findings provide valuable insights for the rational design and enhancement of ssdAbs for detecting small molecule hazards in aquaculture.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s42995-024-00277-3.</p>","PeriodicalId":53218,"journal":{"name":"Marine Life Science & Technology","volume":"7 2","pages":"340-351"},"PeriodicalIF":5.8,"publicationDate":"2025-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12102038/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144144489","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
RNA virus diversity highlights the potential biosecurity threat posed by Antarctic krill. RNA病毒的多样性凸显了南极磷虾构成的潜在生物安全威胁。
IF 5.8 2区 生物学
Marine Life Science & Technology Pub Date : 2025-02-13 eCollection Date: 2025-02-01 DOI: 10.1007/s42995-024-00270-w
Tingting Xu, Xianyong Zhao, Thomas Loch, Jiancheng Zhu, Wei Wang, Xinliang Wang, Chong Wang, Gangzhou Fan, Bin Hao, Jichang Zhang, Wenxiu Zhao, Melba G Bondad-Reantaso, Victoria Alday-Sanz, Qingli Zhang
{"title":"RNA virus diversity highlights the potential biosecurity threat posed by Antarctic krill.","authors":"Tingting Xu, Xianyong Zhao, Thomas Loch, Jiancheng Zhu, Wei Wang, Xinliang Wang, Chong Wang, Gangzhou Fan, Bin Hao, Jichang Zhang, Wenxiu Zhao, Melba G Bondad-Reantaso, Victoria Alday-Sanz, Qingli Zhang","doi":"10.1007/s42995-024-00270-w","DOIUrl":"https://doi.org/10.1007/s42995-024-00270-w","url":null,"abstract":"<p><p>Antarctic krill <i>Euphausia superba</i>, one of the most abundant species on the planet, is a keystone species of the Southern Ocean ecosystem. In the present study, we analyzed the RNA virome of Antarctic krill via metatranscription methods. The results showed that only 0.39% (49/12, 558) of the resultant unigenes could be assigned to known viral taxa, which were most similar to 17 known viruses, including nine invertebrate viruses, two vertebrate viruses, three protozoan viruses and three mycoviruses. However, most of the detected viruses possessed low amino acid similarity with counterparts in the viral databases. <i>Penaeus vannamei</i> picornavirus (PvPV; Family Picornaviridae) and covert mortality nodavirus (CMNV; Family Nodaviridae) were the two most abundant viruses in the Antarctic krill RNA virome. Notably, PvPV and CMNV are known pathogens to multiple aquatic animals according to epidemiological survey and exposure experiments, whereby PvPV positive krill caused clinical symptoms and histopathological lesions to <i>P. vannamei</i> and similarly, CMNV infection altered the swimming and feeding behavior of parent marine medaka <i>Oryzias melastigma</i> and caused tissue damage and even spinal curvature of the offspring. Results herein reveal, for the first time, the high abundance and taxonomic diversity of viruses in Antarctic krill while simultaneously highlighting the risk of an important virus reservoir to global aquaculture, and the potential impact on animals in the Antarctic ecosystem.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s42995-024-00270-w.</p>","PeriodicalId":53218,"journal":{"name":"Marine Life Science & Technology","volume":"7 1","pages":"96-109"},"PeriodicalIF":5.8,"publicationDate":"2025-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11871207/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143544528","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic evidence for demographic fluctuations, genetic burdens and adaptive divergence in fourfinger threadfin Eleutheronema rhadinum. 四指线虫种群波动、遗传负担和适应性分化的基因组证据。
IF 5.8 2区 生物学
Marine Life Science & Technology Pub Date : 2025-01-27 eCollection Date: 2025-02-01 DOI: 10.1007/s42995-024-00276-4
Jie Xiao, Wen-Xiong Wang
{"title":"Genomic evidence for demographic fluctuations, genetic burdens and adaptive divergence in fourfinger threadfin <i>Eleutheronema rhadinum</i>.","authors":"Jie Xiao, Wen-Xiong Wang","doi":"10.1007/s42995-024-00276-4","DOIUrl":"https://doi.org/10.1007/s42995-024-00276-4","url":null,"abstract":"<p><p>Declining populations and bottlenecks lead to the accumulation of deleterious mutations in fish populations. These processes also trigger genetic purging, which is a key genetic factor in reducing the deleterious burdens and increasing population viability. However, there is a lack of empirical evidence on the interaction between demographic history and the genome-wide pattern of deleterious variations. Here, we generated genome resequencing data of <i>Eleutheronema rhadinum</i> from China and Thailand, representing the major distribution of the species' southern regions. <i>E. rhadinum</i> had exceptionally low genome-wide variability and experienced dramatic population expansions followed by continuous declines. The geographical divergence, which occurred ~ 23,000 years ago, shaped different demographic trajectories and generated different regional patterns of deleterious mutations in China and Thailand populations. Several lines of evidence revealed that this geographical pattern of deleterious mutation was driven by the purging of highly deleterious mutations. We showed that purifying selection had inbreeding-associated fitness costs and was more efficient against missense mutations in the Thailand population, which had the lowest genetic burden of homozygous deleterious mutations. Multiple evolutionarily conserved protein domains were disrupted by the loss-of-function mutations, posing a high probability of gene functionality elimination. Moreover, thermal and salinity genes (<i>Trpm3</i>, <i>Nek4</i>, <i>Gtf2f2</i>, <i>Cldn14</i>) were identified in genomic divergence regions of <i>E. rhadinum</i> among China and Thailand populations. Our findings highlight the importance of demographic history factors shaping the geographical patterns of deleterious mutations. The results serve to deepen our understanding of the adaptive evolution and divergence of <i>E. rhadinum</i> with implications for other marine fish.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s42995-024-00276-4.</p>","PeriodicalId":53218,"journal":{"name":"Marine Life Science & Technology","volume":"7 1","pages":"66-78"},"PeriodicalIF":5.8,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11871173/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143544489","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Hepcidin peptide controls the inflammatory response induced by betanodavirus infection and improves European sea bass (Dicentrachus labrax) survival. Hepcidin肽控制betanodavirus感染引起的炎症反应,提高欧洲黑鲈(Dicentrachus labrax)的存活率。
IF 5.8 2区 生物学
Marine Life Science & Technology Pub Date : 2025-01-23 eCollection Date: 2025-02-01 DOI: 10.1007/s42995-024-00262-w
Laura Cervera, Marta Arizcun, Luis Mercado, Alberto Cuesta, Elena Chaves-Pozo
{"title":"Hepcidin peptide controls the inflammatory response induced by betanodavirus infection and improves European sea bass (<i>Dicentrachus labrax</i>) survival.","authors":"Laura Cervera, Marta Arizcun, Luis Mercado, Alberto Cuesta, Elena Chaves-Pozo","doi":"10.1007/s42995-024-00262-w","DOIUrl":"https://doi.org/10.1007/s42995-024-00262-w","url":null,"abstract":"<p><p>Nervous necrosis virus (NNV) is the etiological agent of viral encephalopathy and retinopathy in many fish species, including European sea bass (<i>Dicentrachus labrax</i>) and is of great economic losses to fish farmers. To solve this problem in fish production, antimicrobial peptides (AMPs) have been identified as potential candidates for NNV treatment in aquaculture. Hepcidin (Hamp) is one of the most promising AMPs. Thus, we aimed to evaluate the therapeutic application of Hamp synthetic peptide after NNV challenge. Hamp was able to significantly increase survival rates and ameliorate clinical signs of the disease, though the viral levels, determined by viral replication and immunolocalization, were not affected. Synthetic Hamp increased the immunoglobulin M (IgM) and AMP protein levels in serum and some tissues respect to the levels found in NNV-infected fish. However, Hamp peptide decreased the NNV-induced bactericidal activity. At the gene level, Hamp exerted anti-inflammatory properties, reducing the pro-inflammatory response orchestrated by NNV, probably preventing neuronal damage. Apart from this, Hamp up-regulated the expression of adhesion molecules that facilitated the recruitment of immune cells, namely T helper and B cells, probably to orchestrate the adaptive response. To conclude, Hamp immunomodulatory properties and therapeutic application against NNV are very promising for its use in aquaculture.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s42995-024-00262-w.</p>","PeriodicalId":53218,"journal":{"name":"Marine Life Science & Technology","volume":"7 1","pages":"110-119"},"PeriodicalIF":5.8,"publicationDate":"2025-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11871212/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143544495","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Trans-4-hydroxy-L-proline catabolism by Pseudomonadota in the ocean. 海洋中假单胞菌对反式-4-羟基- l -脯氨酸的分解代谢。
IF 5.8 2区 生物学
Marine Life Science & Technology Pub Date : 2025-01-10 eCollection Date: 2025-02-01 DOI: 10.1007/s42995-024-00272-8
Yan Wang, Zhen Wang, Wen-Xiao Zhao, Xiao-Jie Yuan, Yang Yu, Peng Wang, Min Wang, Andrew McMinn, Yu-Zhong Zhang, Ming Peng, Hui-Hui Fu, Xiu-Lan Chen
{"title":"<i>Trans</i>-4-hydroxy-L-proline catabolism by <i>Pseudomonadota</i> in the ocean.","authors":"Yan Wang, Zhen Wang, Wen-Xiao Zhao, Xiao-Jie Yuan, Yang Yu, Peng Wang, Min Wang, Andrew McMinn, Yu-Zhong Zhang, Ming Peng, Hui-Hui Fu, Xiu-Lan Chen","doi":"10.1007/s42995-024-00272-8","DOIUrl":"https://doi.org/10.1007/s42995-024-00272-8","url":null,"abstract":"<p><p>Free <i>trans</i>-4-hydroxy-L-proline (T4LHyp), a non-proteinogenic amino acid, is mainly released from the degradation of collagen, hydroxyproline-rich glycoproteins, and some peptide antibiotics in nature. Although it has been known that some terrestrial bacteria utilize T4LHyp as carbon and nitrogen source via a T4LHyp gene cluster, which and how marine microorganisms catabolize T4LHyp still remains unclear. Here, five T4LHyp-utilizing marine bacterial strains, <i>Halomonas</i> sp. 5021, <i>Salinicola</i> sp. 4072, <i>Alteromonas</i> sp. 6022, <i>Alteromonas</i> sp. 5112 and <i>Alteromonas</i> sp. 30521, were isolated from hydrothermal vent sediment samples collected from the southwest Indian Ocean. While <i>Halomonas</i> sp. 5021 can utilize T4LHyp as both a nitrogen and carbon source, the other four strains can utilize T4LHyp as only a nitrogen source. Then, the T4LHyp catabolic mechanisms of <i>Halomonas</i> sp. 5021 and <i>Salinicola</i> sp. 4072, as a representative of the four strains, were further investigated by genomic, transcriptional, and biochemical analyses. <i>Halomonas</i> sp. 5021 adopts an intact T4LHyp gene cluster containing four enzymes to catabolize T4LHyp into NH<sub>3</sub> and α-ketoglutarate to provide nitrogen and carbon sources for its growth. Compared to <i>Halomonas</i> sp. 5021, <i>Salinicola</i> sp. 4072 lacks an α-KGSA dehydrogenase gene in the T4LHyp gene cluster and can only catabolize T4LHyp into NH<sub>3</sub> and α-ketoglutarate semialdehyde to provide a nitrogen source for its growth. Bioinformatic investigation showed that the 5021-like and 4072-like T4LHyp gene clusters are predominantly found in bacteria from <i>Pseudomonadota</i>, which are widely distributed in multiple marine habitats. Thus, <i>Pseudomonadota</i> bacteria are likely the dominant group to drive the recycling and mineralization of T4LHyp in the ocean.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s42995-024-00272-8.</p>","PeriodicalId":53218,"journal":{"name":"Marine Life Science & Technology","volume":"7 1","pages":"187-202"},"PeriodicalIF":5.8,"publicationDate":"2025-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11871167/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143544442","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Marine Flavobacteriaceae produce zeaxanthin via the mevalonate pathway. 海洋黄杆菌科通过甲羟戊酸途径产生玉米黄质。
IF 5.8 2区 生物学
Marine Life Science & Technology Pub Date : 2025-01-07 eCollection Date: 2025-02-01 DOI: 10.1007/s42995-024-00268-4
Yuerong Chen, Jianmin Xie, Min Yang, Runlin Cai, Chao Cai, Yongliang Gan, Jude Juventus Aweya, Guanjing Cai, Hui Wang
{"title":"Marine <i>Flavobacteriaceae</i> produce zeaxanthin via the mevalonate pathway.","authors":"Yuerong Chen, Jianmin Xie, Min Yang, Runlin Cai, Chao Cai, Yongliang Gan, Jude Juventus Aweya, Guanjing Cai, Hui Wang","doi":"10.1007/s42995-024-00268-4","DOIUrl":"https://doi.org/10.1007/s42995-024-00268-4","url":null,"abstract":"<p><p>Zeaxanthin, an oxygenated carotenoid derivative with potent antioxidative properties, is produced by many organism taxa. <i>Flavobacteriaceae</i> are widely distributed in marine environments; however, the zeaxanthin biosynthesis property in this family remains incompletely explored. Here, we characterized zeaxanthin production by marine <i>Flavobacteriaceae</i> strains and elucidated underlying molecular mechanisms. Eight <i>Flavobacteriaceae</i> strains were isolated from the phycosphere of various dinoflagellates. Analyses of the zeaxanthin production in these strains revealed yields ranging from 5 to 3289 µg/g of dry cell weight. Genomic and molecular biology analyses revealed the biosynthesized zeaxanthin through the mevalonate (MVA) pathway diverging from the 2-<i>C</i>-methyl-d-erythritol-4-phosphate (MEP) pathway commonly observed in most Gram-negative bacteria. Furthermore, comprehensive genome analyses of 322 culturable marine Flavobacteriale strains indicated that the majority of <i>Flavobacteriaceae</i> members possess the potential to synthesize zeaxanthin using precursors derived from the MVA pathway. These data provide insight into the zeaxanthin biosynthesis property in marine <i>Flavobacteriaceae</i> strains, highlighting their ecological and biotechnological relevance.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s42995-024-00268-4.</p>","PeriodicalId":53218,"journal":{"name":"Marine Life Science & Technology","volume":"7 1","pages":"132-143"},"PeriodicalIF":5.8,"publicationDate":"2025-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11871244/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143544508","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Assessing the interaction of oceanic and riverine processes on coastal phytoplankton dynamics in the East China Sea. 评估海洋和河流过程对东海沿岸浮游植物动态的相互作用。
IF 5.8 2区 生物学
Marine Life Science & Technology Pub Date : 2025-01-07 eCollection Date: 2025-02-01 DOI: 10.1007/s42995-024-00260-y
Jiawei Gao, Rong Bi, Julian P Sachs, Yaoyao Wang, Yang Ding, Hong Che, Jing Zhang, Peng Yao, Jie Shi, Meixun Zhao
{"title":"Assessing the interaction of oceanic and riverine processes on coastal phytoplankton dynamics in the East China Sea.","authors":"Jiawei Gao, Rong Bi, Julian P Sachs, Yaoyao Wang, Yang Ding, Hong Che, Jing Zhang, Peng Yao, Jie Shi, Meixun Zhao","doi":"10.1007/s42995-024-00260-y","DOIUrl":"10.1007/s42995-024-00260-y","url":null,"abstract":"<p><p>The interaction of riverine inputs and ocean current systems causes complex spatiotemporal variations in phytoplankton dynamics in marginal seas of the northwest Pacific Ocean, yet quantitative assessments of these variations and their causes remain limited. Here we evaluate phytoplankton biomass and community structure changes using lipid biomarkers, accompanying ocean circulation and nutrient variations in surface waters collected in spring and summer of 2017-2018 at 118 sites in the East China Sea off the Zhejiang coast. High biomass of diatoms, inferred from brassicasterol concentrations, shifted from the south in spring to the north in summer, while high dinoflagellate biomass, inferred from dinosterol concentrations, occurred mainly in the Changjiang (Yangtze) River plume and adjacent areas in both seasons. Seasonal variation in phytoplankton distribution was linked to the spatial extents of water masses such as the Changjiang Diluted Water (CDW) and the intrusion of the Kuroshio Subsurface Water (KSSW). A three end-member mixing model was applied to quantify water mass contributions. The results showed that an increase in the KSSW (from 0 to 40%) and a decrease in the CDW (from 100 to 20%) resulted in a significant (20%) increase in diatom proportions and a significant (20%) decrease in dinoflagellate proportions. Dinoflagellate proportions were highest in the CDW-dominated region, while diatoms and total phytoplankton biomass were higher in the CDW-KSSW mixing region and the KSSW-dominated region. This study highlights the dynamic response of the phytoplankton community to water mass changes in marginal seas that can aid coastal ecosystem management.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s42995-024-00260-y.</p>","PeriodicalId":53218,"journal":{"name":"Marine Life Science & Technology","volume":"7 1","pages":"157-175"},"PeriodicalIF":5.8,"publicationDate":"2025-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11871228/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143544448","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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