Cellular and molecular biology (Noisy-le-Grand, France)最新文献

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Expression patterns and clinical significance of MMP-8, MMP-9 and MMP-13 in colorectal cancer. MMP-8、MMP-9、MMP-13在结直肠癌中的表达规律及临床意义
Cellular and molecular biology (Noisy-le-Grand, France) Pub Date : 2025-10-07 DOI: 10.14715/cmb/2025.71.9.14
Rezvaneh Ghadyani, Zahra Mozooni, Zihab Sohbatzadeh, Latif Gachkar, Sepehr Kahrizi, Abolfazl Movafagh
{"title":"Expression patterns and clinical significance of MMP-8, MMP-9 and MMP-13 in colorectal cancer.","authors":"Rezvaneh Ghadyani, Zahra Mozooni, Zihab Sohbatzadeh, Latif Gachkar, Sepehr Kahrizi, Abolfazl Movafagh","doi":"10.14715/cmb/2025.71.9.14","DOIUrl":"https://doi.org/10.14715/cmb/2025.71.9.14","url":null,"abstract":"<p><p> Colorectal cancer (CRC) is the most common malignancy of the gastrointestinal system in the world. By identifying specific gene expression patterns that indicate CRC in the early stages, it is possible to potentially diagnose the disease in the early stages and start treatment quickly. Matrix metalloproteinases (MMPs) play a crucial role in the degradation of the extracellular matrix and tissue remodeling. Among them, MMP-8, MMP-9 and MMP-13 have been found to be upregulated in various cancers, including CRC, and are associated with tumor invasion, metastasis, and angiogenesis. This study investigated tissue expressions of MMP-8, MMP-9, and MMP-13 in CRC patients and explored their possible associations with pathological and clinical factors. 100 patients with CRC and 100 control subjects were involved in the study. Tissue and blood samples were collected. The quantitative Real-Time PCR (qRT-PCR) technique was used to assess the expression levels of the MMP-8, MMP-9, and MMP-13 in CRC tissue samples in comparison with the adjacent control tissue.  Our results revealed that the expression levels of MMP-8, MMP-9, and MMP-13 were significantly up-regulated in CRC tissues compared to the adjacent control group. Analysis of patients' clinicopathological features showed a statistically significant difference in the expression levels of MMP-8, MMP-9, and MMP-13 between CRC patients with and without lymphovascular invasion (LVI) and TMN stage. ROC curve results have shown that these genes are good candidate diagnostic biomarkers in CRC.  These results indicated that MMP-8, MMP-9, and MMP-13 levels may serve as potential diagnostic biomarkers for CRC.</p>","PeriodicalId":520584,"journal":{"name":"Cellular and molecular biology (Noisy-le-Grand, France)","volume":"71 9","pages":"111-116"},"PeriodicalIF":0.0,"publicationDate":"2025-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145240552","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LncRNA MEG3 overexpression modulates proliferation without inducing apoptosis in rat cardiomyoblast h9c2 cells: a transcriptomic approach. LncRNA MEG3过表达调节大鼠成心肌细胞h9c2细胞增殖而不诱导凋亡:转录组学方法
Cellular and molecular biology (Noisy-le-Grand, France) Pub Date : 2025-10-07 DOI: 10.14715/cmb/2025.71.9.2
Zhi Xing, Shajidan Abudureyimu, Palida Abulaiti, Yu Wang, Hui Li, Maolin Lyu, Ying Gao
{"title":"LncRNA MEG3 overexpression modulates proliferation without inducing apoptosis in rat cardiomyoblast h9c2 cells: a transcriptomic approach.","authors":"Zhi Xing, Shajidan Abudureyimu, Palida Abulaiti, Yu Wang, Hui Li, Maolin Lyu, Ying Gao","doi":"10.14715/cmb/2025.71.9.2","DOIUrl":"https://doi.org/10.14715/cmb/2025.71.9.2","url":null,"abstract":"<p><p>Long non-coding RNAs (lncRNAs) have been implicated in various biological processes including cell proliferation and apoptosis. However, the role of lncRNA-MEG3 in rat cardiomyoblast H9C2 cells remains unclear. In this study, H9C2 cells were genetically modified to overexpress lncRNA MEG3. The proliferation of these cells was evaluated using the Cell Counting Kit-8 (CCK-8) assay and direct imaging techniques. Apoptosis was assessed through flow cytometry, employing Annexin V and propidium iodide (PI) staining. Quantitative PCR was utilized to confirm the overexpression of lncRNA MEG3. Further, differential expression and alternative splicing analyses were conducted using comprehensive transcriptome sequencing. The overexpression of lncRNA MEG3 in H9C2 cells led to a significant reduction in cell proliferation, as evidenced by lower absorbance readings in the CCK-8 assay and reduced cell confluency in imaging analyses. However, flow cytometric analysis revealed no substantial differences in apoptosis between the lncRNA MEG3 overexpressing group and the control. Transcriptomic analyses demonstrated significant changes in gene expression and alternative splicing patterns, highlighting the intricate role of lncRNA MEG3 in cellular regulatory mechanisms. In conclusion, lncRNA MEG3 overexpression in rat cardiomyoblast H9C2 cells significantly inhibits cellular proliferation without markedly inducing apoptosis, suggesting a specific regulatory role in cellular growth processes. The transcriptomic alterations observed underscore the potential of lncRNA MEG3 as a key player in the molecular dynamics of cardiomyoblasts.</p>","PeriodicalId":520584,"journal":{"name":"Cellular and molecular biology (Noisy-le-Grand, France)","volume":"71 9","pages":"9-16"},"PeriodicalIF":0.0,"publicationDate":"2025-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145240682","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genetic polymorphisms and immune cytokine profiles in the cellular pathogenesis of polycystic ovary syndrome among Iraqi women. 遗传多态性和免疫细胞因子谱在伊拉克妇女多囊卵巢综合征的细胞发病机制。
Cellular and molecular biology (Noisy-le-Grand, France) Pub Date : 2025-10-07 DOI: 10.14715/cmb/2025.71.9.7
Orass Madhi Shaheed Al-Taei, Maather Baqer Hussein Al-Harmooshee
{"title":"Genetic polymorphisms and immune cytokine profiles in the cellular pathogenesis of polycystic ovary syndrome among Iraqi women.","authors":"Orass Madhi Shaheed Al-Taei, Maather Baqer Hussein Al-Harmooshee","doi":"10.14715/cmb/2025.71.9.7","DOIUrl":"https://doi.org/10.14715/cmb/2025.71.9.7","url":null,"abstract":"<p><p>Immune dysregulation and genetic polymorphisms are recognized as critical contributors to the pathogenesis of polycystic ovary syndrome (PCOS). The present study aimed to investigate the roles of specific cytokines and the CYP11A1 (rs4077582) polymorphism in Iraqi women diagnosed with PCOS. The current study included collecting samples from 100 women with PCOS and 100 healthy women as a control group. Clinical and laboratory tests were conducted at Diwaniyah General Hospital. The concentration of interferon-gamma, interleukin-2, interleukin-4 and interleukin-10 in the serum was determined utilizing the ELISA technique, while genetic CYP11A1(rs4077582) polymorphisms were determined using the PCR-RFLP technique. ELISA results demonstrated the concentration of interferon-gamma, interleukin-2 in FF in PCOS are significantly increased (123.8 ± 33.6, 45.77 ± 8.92 ng/ml respectively) compared with those in controls (23.5 ± 4.29, 7.31 ± 1.07 ng/ml respectively) while concentration of IL-4 and IL-10 reduced in patients (22.62 ± 6.24 and 5.81 ± 1.11 ng/ml respectively) compared to control (167.1 ± 18.62 and 37.54 ± 7.11ng/ml respectively). The results showed an increase in rate of mutant genotype CC and allele C in patients (34% and 64% respectively) compared to controls (12% and 25% respectively), while a decrease in the proportion of normal genotype TT and allele T in patients (6% and 36% respectively) compared with healthy subjects (62% and 75% respectively).  immune function of IFN-γ, IL-2, IL-4 and IL-10 and CYP11A1(rs4077582) polymorphisms significantly associated with PCOS.</p>","PeriodicalId":520584,"journal":{"name":"Cellular and molecular biology (Noisy-le-Grand, France)","volume":"71 9","pages":"56-62"},"PeriodicalIF":0.0,"publicationDate":"2025-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145240660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bitter frankincense water modulates hepatic enzyme activity in female patients with irritable bowel syndrome. 苦乳香水调节女性肠易激综合征患者肝酶活性。
Cellular and molecular biology (Noisy-le-Grand, France) Pub Date : 2025-10-07 DOI: 10.14715/cmb/2025.71.9.10
Khamaal Hussein Abod Al-Khafaji, Zahraa Mohammed Fakheir, Shaimaa Mohammed Ali Jasim
{"title":"Bitter frankincense water modulates hepatic enzyme activity in female patients with irritable bowel syndrome.","authors":"Khamaal Hussein Abod Al-Khafaji, Zahraa Mohammed Fakheir, Shaimaa Mohammed Ali Jasim","doi":"10.14715/cmb/2025.71.9.10","DOIUrl":"https://doi.org/10.14715/cmb/2025.71.9.10","url":null,"abstract":"<p><p>This study aimed to determine and know the effect of bitter frankincense water on the levels of the functional liver enzymes in female patients with irritable bowel syndrome. This study was conducted in the consulting laboratories for pathological analyses in Iraq for the period from January to February 2025. The study was applied to 25 female patients, whose ages ranged from 20 to 65 years and healthy group consisted of 25 females, aged between 20 - 65. Bitter frankincense water, was bought from reputable local markets, enough to feed 25 female patients for two months. The amount was 3 ml/kg, and each female patient was given the dose according to his weight. This is done by dividing the dose in half, for the morning and for the evening. Before administering bitter frankincense water to female patients with irritable bowel syndrome, a five milliliter blood sample was obtained, and the liver enzymes were evaluated for the samples, alanine aminotransferase (ALT), aspartate aminotransferase (AST), alkaline phosphatase (ALP) and gamma-glutamyl transferase (GGT). Subsequently, samples were collected from the same group of female patients with irritable bowel syndrome to compare the effects of bitter frankincense water before and after giving. The results of the study showed a significant decrease (P<0.05) in the levels of liver function enzymes, alanine aminotransferase (ALT), aspartate aminotransferase (AST), alkaline phosphatase (ALP) and gamma-glutamyl transferase (GGT) in patients with irritable bowel syndrome in women after these patients took doses of FWB. The study's notable reduction in liver enzyme levels suggests that FWB may be a useful natural hepatoprotective treatment for people with IBS. These results encourage more investigation into FWB as a supplemental treatment for enhancing gut-liver axis balance and liver function in IBS patients.</p>","PeriodicalId":520584,"journal":{"name":"Cellular and molecular biology (Noisy-le-Grand, France)","volume":"71 9","pages":"80-85"},"PeriodicalIF":0.0,"publicationDate":"2025-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145240404","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Reciprocal regulation of mir-10b, aurora-a, p53, and e-cadherin in cisplatin resistance and cell invasion of lung cancer. mir-10b、aurora-a、p53和e-cadherin在肺癌顺铂耐药和细胞侵袭中的相互调控
Cellular and molecular biology (Noisy-le-Grand, France) Pub Date : 2025-10-07 DOI: 10.14715/cmb/2025.71.9.4
Chen-Chu Lin, Chun-Chi Wu
{"title":"Reciprocal regulation of mir-10b, aurora-a, p53, and e-cadherin in cisplatin resistance and cell invasion of lung cancer.","authors":"Chen-Chu Lin, Chun-Chi Wu","doi":"10.14715/cmb/2025.71.9.4","DOIUrl":"https://doi.org/10.14715/cmb/2025.71.9.4","url":null,"abstract":"<p><p>Lung cancer remains a leading cause of cancer-related deaths in developed nations, including Taiwan, mainly due to drug resistance or malignant conditions such as metastasis. Abnormal expression levels of oncogenes or tumor suppressors are recognized as inducing changes and malignancy in various cancers, including lung cancer. This report illustrates that mir-10b, Aurora-A, N-cadherin, and vimentin expression levels are elevated. At the same time, p53 and E-cadherin are reduced in A549cisR clones compared to parental cells, indicating a possible regulatory network among these molecules in malignant neoplasms. A functional assay demonstrated that the reduction of mir-10b or Aurora-A lessened both the resistance to cisplatin and cell motility of A549cisR cells, accompanied by a decrease in vimentin and N-cadherin, while an increase in p53 and E-cadherin. The co-expression of mir-10b agomir restores the drug-resistant and invasive motility of Aurora- A-knockdown A549cisR cells. Besides, ectopic expression of the active form of Aurora-A also increases mir-10b, N-cadherin, and vimentin expressions while decreasing E-cadherin and p53 levels, thus restoring cisplatin resistance and cell motility in mir-10b-knockdown A549cisR cells. Interestingly. Ectopic expression of E-cadherin reduced both motility and resistance to chemotherapeutic drugs, accompanied by altering Aurora-A, p53, and mir-10b levels in A549cisR cells. Subsequent investigations revealed that mir-10b secretion increased in A549cisR cells. Parental A549 cells cultured with a conditioned medium of A549cisR cells showed significantly reduced endogenous p53 expression, while inducing Aurora-A expression and increased viability after cisplatin treatment. Transfection with mir-10b antagomir reversed the expressions of Aurora- A, N-cadherin, vimentin, p53 and E-cadherin and the effects in parental A549 cells cultured in a conditioned medium. These findings suggest that the mir-10b-Aurora-A-E-cadherin pathway is crucial in orchestrating various malignancies, such as invasive motility and drug resistance, offering a possible malignancy-priming route in lung tumor cells with regular cisplatin treatment.</p>","PeriodicalId":520584,"journal":{"name":"Cellular and molecular biology (Noisy-le-Grand, France)","volume":"71 9","pages":"29-37"},"PeriodicalIF":0.0,"publicationDate":"2025-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145240651","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
TNF-α 308 (rs1800629) and INF-γ +874 polymorphisms in dengue progression: genotype-specific trends amidst allelic non-association in West Africa. TNF-α 308 (rs1800629)和INF-γ +874多态性在登革热进展中:西非等位基因无关联的基因型特异性趋势
Cellular and molecular biology (Noisy-le-Grand, France) Pub Date : 2025-10-07 DOI: 10.14715/cmb/2025.71.9.1
Fadilatou Tassembedo, Aziz Sidi Aristide Tapsoba, Shoukrat Ohuwa Toyin Bello, Olawoumi Fabrice Kouta, Mousso Savadogo, Rogomenoma Alice Ouedraogo, Dénise P Ilboudo, Lassina Traore, Fiffou Yougbare, Bolni Marius Nagalo, Florencia Wendkuuni Djigma, Potiandi Serge Diagbouga, Jacques Simpore
{"title":"TNF-α 308 (rs1800629) and INF-γ +874 polymorphisms in dengue progression: genotype-specific trends amidst allelic non-association in West Africa.","authors":"Fadilatou Tassembedo, Aziz Sidi Aristide Tapsoba, Shoukrat Ohuwa Toyin Bello, Olawoumi Fabrice Kouta, Mousso Savadogo, Rogomenoma Alice Ouedraogo, Dénise P Ilboudo, Lassina Traore, Fiffou Yougbare, Bolni Marius Nagalo, Florencia Wendkuuni Djigma, Potiandi Serge Diagbouga, Jacques Simpore","doi":"10.14715/cmb/2025.71.9.1","DOIUrl":"https://doi.org/10.14715/cmb/2025.71.9.1","url":null,"abstract":"<p><p>Dengue, transmitted by Aedes mosquitoes, represents a significant global health challenge due to its complex host-pathogen interactions and varying disease severity. Genetic factors are known to influence the clinical outcome of dengue infections. This study aimed to investigate the potential role of TNF-α gene polymorphism 308 (rs1800629) and INF-γ +874 (rs62559044) in the progression of dengue virus infection. Conducted in the Central region of Burkina Faso, this study included 246 participants, comprising 117 controls and 129 dengue-positive patients. Genotyping of the TNF-α 308 (rs1800629) and INF-γ +874 A/T (rs62559044) polymorphisms was performed using restriction fragment length polymorphism (RFLP) and Amplification Refractory Mutation System PCR (ARMS-PCR) techniques, respectively.  Our analysis revealed no significant correlation between lymphocyte count and dengue severity (P = 0.95). Although we did not find an association between the alleles of the SNPs TNF-α 308 (rs1800629) and INF-γ +874 (rs6255904) studied with either DF or severe DS, we cannot conclude the same for their respective genotypes Thus, the AA and GG genotypes of TNF-α are associated with the contraction of DF and DS, respectively; the former is even associated with the progression of  DF to the severe form of the disease. For INF-γ  AA genotypes are more associated with progression to severe dengue and the AT heterozygote could be associated with a possibility of preventing progression to DS forms. . The A allele frequencies was higher frequency in DF than in DS pour TNF-α 308  , but this difference lacked statistical significance (P > 0.005). With INF-γ  tTT genotype was more prevalent in DS, whereas the AT genotype frequencies differed between DF (23.96%) and DS (19.35%). Our results reveal through the allelic levels of TNF-α 308 and INF-γ +874; that the latter would not play a significant role in the progression of dengue virus infection to severe forms. However, previous studies through a clear mechanism show a strong association between the concentrations of these cytokines and the pathogenesis of dengue. This underlines the need for further investigations to elucidate the genetic determinants of the severity of dengue. In particular, a proteomic study coupled with sequencing on a representative population of the West African region would be a great asset in understanding the involvement of the genes of these cytokines in the pathogenesis of dengue.</p>","PeriodicalId":520584,"journal":{"name":"Cellular and molecular biology (Noisy-le-Grand, France)","volume":"71 9","pages":"1-8"},"PeriodicalIF":0.0,"publicationDate":"2025-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145240687","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Inverse correlation of miR-196a and HOXB13 expression in Iraqi patients with prostate cancer. miR-196a与HOXB13在伊拉克前列腺癌患者中的表达呈负相关
Cellular and molecular biology (Noisy-le-Grand, France) Pub Date : 2025-10-07 DOI: 10.14715/cmb/2025.71.9.8
Hiba Muneer Abd-Alhassan Al-Khafaji, Rehab M Khadum, Sara Mohammed Ouda, Maryam Qasim Mohammed
{"title":"Inverse correlation of miR-196a and HOXB13 expression in Iraqi patients with prostate cancer.","authors":"Hiba Muneer Abd-Alhassan Al-Khafaji, Rehab M Khadum, Sara Mohammed Ouda, Maryam Qasim Mohammed","doi":"10.14715/cmb/2025.71.9.8","DOIUrl":"https://doi.org/10.14715/cmb/2025.71.9.8","url":null,"abstract":"<p><p>Prostate cancer (PCa), a significant health concern in aging men, is influenced by the HOXB13 gene, a key regulator of prostate development and cell differentiation. Dysregulation of HOXB13, including genetic variants and altered expression, is related to PCa risk and progression. Importantly, the expression of HOXB13 is modulated by microRNAs, particularly miR-196a. The miR-196a controls expression of genes via mRNA binding, causing degradation or inhibiting translation. It targets HOX genes, crucial for development, and exhibits variable activity in cancers, including PCa. Therefore, the interplay between PC, HOXB13, and miR-196a contributes to the understanding of the molecular basis of PCa and identifies potential therapeutic strategies. This study involved a case-control design, comprising 120 blood samples divided into 60 PCa patients and 60 controls. Molecular analyses were performed on these samples, involving total RNA extraction followed by purification via a commercial kit. Subsequently, complementary DNA was synthesized. A quantitative real-time polymerase chain reaction was used to measure the expression levels of the HOXB13 gene and miR-196a. Relative expression levels of both HOXB13 and miR-196a were determined using established quantification methodologies. Statistical analyses were conducted using SPSS and GraphPad Prism software. Our findings demonstrated a significant increase in HOXB13 gene expression (p≤0.01), specifically a fourfold elevation in PCa patients compared to healthy individuals. In contrast, miR-196a expression exhibited a significant decrease (p≤0.01), suggesting a potential inverse regulatory correlation with HOXB13. This study reveals a significant inverse correlation between HOXB13 and miR-196a expression in PCa patients. Specifically, the HOXB13 expression level was upregulated, while the miR-196a level was downregulated. These findings suggest that miR-196a may be used as a prospective tumor suppressor in PCa by negatively regulating HOXB13, thereby inhibiting cell proliferation and invasion. Consequently, miR-196a may emerge as a promising diagnostic molecular target for prostate cancer.</p>","PeriodicalId":520584,"journal":{"name":"Cellular and molecular biology (Noisy-le-Grand, France)","volume":"71 9","pages":"63-70"},"PeriodicalIF":0.0,"publicationDate":"2025-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145240699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of novel variants with predicted pathogenicity as key targets in esophageal cancer. 鉴定具有预测致病性的新变异是食管癌的关键靶点。
Cellular and molecular biology (Noisy-le-Grand, France) Pub Date : 2025-10-07 DOI: 10.14715/cmb/2025.71.9.11
Waqas Ahmad Abbasi, Sajida Qureshi, Muhammad Asif Qureshi, Mohammad Saeed Quraishy
{"title":"Identification of novel variants with predicted pathogenicity as key targets in esophageal cancer.","authors":"Waqas Ahmad Abbasi, Sajida Qureshi, Muhammad Asif Qureshi, Mohammad Saeed Quraishy","doi":"10.14715/cmb/2025.71.9.11","DOIUrl":"https://doi.org/10.14715/cmb/2025.71.9.11","url":null,"abstract":"<p><p>Esophageal cancer (EC) remains a major global health challenge due to its aggressive nature and poor prognosis. Genetic alterations play a crucial role in tumor progression; however, a deeper understanding of the genetic landscape of EC is essential for identifying novel and potent therapeutic targets. This study aims to identify key genes and their variants with potential pathogenicity driving EC progression. Whole-exome sequencing (WES) was performed on EC samples to identify missense variants. A comprehensive in-silico analysis was conducted using SIFT, FATHMM, PROVEAN, MutationTaster, and LRT to classify high-risk variants. Gene expression, mutation frequency, and prognostic relevance were analyzed using GEPIA and cBioPortal platforms. Protein stability was assessed with MuPro and I-Mutant to evaluate the impact of the identified variant, while protein-protein interaction (PPI) analysis via STRING and enrichment analysis through Metascape were performed to explore associated biological pathways. A total of 331 novel high-risk missense variants were identified across 274 genes and systematically refined, narrowing down to 23 prognostically significant variants in 11 genes (PSMC1, SCN8A, HNRNPA3, RPL23, COL5A2, TBL1XR1, TCP1, HNRNPD, CALM2, ABCC2, and HNRNPA1), which were also among the most differentially expressed in EC. Variants in these genes were predicted to destabilize their corresponding proteins, contributing to EC progression. In-silico survival analysis further indicated significantly worse outcomes for patients harboring alterations in these genes, including others. Protein stability analysis confirmed their destabilizing effects, while functional enrichment highlighted their involvement in key pathways driving tumorigenesis. This study identified 11 key DEGs harboring potentially pathogenic novel missense variants, highlighting vulnerabilities for precision-targeted therapies in EC.</p>","PeriodicalId":520584,"journal":{"name":"Cellular and molecular biology (Noisy-le-Grand, France)","volume":"71 9","pages":"86-95"},"PeriodicalIF":0.0,"publicationDate":"2025-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145240670","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Chitinase from Bacillus sp. SRTI8: production, purification and biocontrol activities. 芽孢杆菌SRTI8几丁质酶的制备、纯化及生物防治活性。
Cellular and molecular biology (Noisy-le-Grand, France) Pub Date : 2025-10-07 DOI: 10.14715/cmb/2025.71.9.3
Sara Sahnoun, Bilal Yahiaoui, Aïcha Benlounissi, Hassiba Laribi-Habchi, Abdenacer Mouffok
{"title":"Chitinase from Bacillus sp. SRTI8: production, purification and biocontrol activities.","authors":"Sara Sahnoun, Bilal Yahiaoui, Aïcha Benlounissi, Hassiba Laribi-Habchi, Abdenacer Mouffok","doi":"10.14715/cmb/2025.71.9.3","DOIUrl":"https://doi.org/10.14715/cmb/2025.71.9.3","url":null,"abstract":"<p><p>From sand in the Algerian Sahara, an isolated strain of Bacillus called Bacillus sp. SRIT8 showed little chitinase activity when grown in a minimal medium supplemented with chitin (2.36 U). Using Plackett-Burman and Box-Behnken statistical plans, we could maximize chitinase synthesis, which led to a notable increase in this enzymatic activity (112 U). The purification of the resulting enzyme involved three steps: ammonium sulfate precipitation, molecular exclusion chromatography, and anion exchange chromatography. This process yielded a specific activity of 5437.14 U/mg with a purification yield of 22.44%. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis examination revealed a protein band of about 31 kDa, and optimum enzyme activity was found at pH 5 and 40 °C. Enzyme activity was boosted by Ca+2, Na+, and Mn+2 ions but was suppressed by Hg+2 ions. The purified enzyme inhibited the growth of the plant pathogen Fusarium graminearum on wheat in both in vitro tests. So, it might prevent fungal infections in wheat throughout the germination process. The enzyme was also effective as a bioinsecticide, killing up to 52% of the larvae of Sitophilus granarius Linnaeus, an insect pest of stored grain. Our chitinase's capacity to hydrolyze fungus cell walls as well as insect cuticles can be utilised as biological control agent.</p>","PeriodicalId":520584,"journal":{"name":"Cellular and molecular biology (Noisy-le-Grand, France)","volume":"71 9","pages":"18-28"},"PeriodicalIF":0.0,"publicationDate":"2025-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145240332","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Biogenic synthesis and characterization of MgO nanoparticles from banana peel extract with evaluation of their antibacterial and antioxidant activities in cellular models. 香蕉皮提取物纳米氧化镁的生物合成和表征及其细胞模型抗菌和抗氧化活性评价
Cellular and molecular biology (Noisy-le-Grand, France) Pub Date : 2025-10-07 DOI: 10.14715/cmb/2025.71.9.6
Eman Kadhem Jawada, Hisham Faiadh Mohammad, Khadeeja Sadiq Jaffer
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