Problems of Particularly Dangerous Infections最新文献

{"title":"On Microflora of Entomoparasitic Nematodes from Long-Tailed Souslik Fleas in Tuva Mountain Natural Plague Focus","authors":"E. Tokmakova, N. Galatsevich, L. P. Bazanova, O. L. Balgan, A. S. Ponomareva, A. Ostyak, I. S. Akimova, S. V. Balakhonov","doi":"10.21055/0370-1069-2024-1-168-175","DOIUrl":"https://doi.org/10.21055/0370-1069-2024-1-168-175","url":null,"abstract":"Entomoparasitic nematodes have a specific role to play in the persistence of Yersinia pestis in natural foci, however their natural microbial environment has not been studied.The aim of the study was to search for bacteria associated with nematodes parasitizing fleas-vectors of plague in the Tuva natural focus.Materials and methods. Fleas were collected during the planned epizootiological surveillance in May, 2017 and 2018. During the taxonomic identification of insects, the presence of parasitic nematodes was recorded. In 2017, bacteriological examination of fleas affected by nematodes and those free from them was carried out separately without dissection. The presence and number of bacteria colonies on the agar plates were taken into account. The results were evaluated by conventional methods using the Excel program. The t-criterion, one-factor analysis of variance were employed. In 2018, 84 invaded fleas were dissected. Extracted nematodes were suspended in Hottinger’s broth, followed by cultivation of grown bacteria on Hottinger’s agar. Systematic position of isolated cultures was determined through mass spectrometric analysis (MALDI-TOF) and partial sequencing of 16S rRNA.Results and discussion. In 2017, 30 samples of fleas with helminthes and 276 without helminthes were bacteriologically examined, including 23 samples infested and 145 non-infested specimens of the main vector, Citellophilus tesquorum. Statistical differences in the proportion of samples contaminated by unpretentious bacteria and effect of flea abundance in the sample on the number of colonies grown have not been revealed. In 2018, 26 cultures of bacteria of the genera Serratia, Staphylococcus, Pseudomonas, Acinetobacter, Macrococcus, and Bacillus were isolated from 23 samples of entomoparasitic nematodes. Possible ways of their penetration into flea imagoes are discussed.","PeriodicalId":516710,"journal":{"name":"Problems of Particularly Dangerous Infections","volume":"11 42","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140745718","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Assessment of the Impact of Polycyclic Derivatives of the Frame Series on the Replicative Properties of the SARS-CoV-2 Virus in an in vitro Experiment","authors":"O. S. Zaleuskaya, V. A. Shiryaev, Yurii Klimochkin, S. F. Semyonov, L. P. Rodionova, O. V. Klimovich, Ya. V. Liutina, M. V. Leonova, A. G. Kras’ko","doi":"10.21055/0370-1069-2024-1-148-153","DOIUrl":"https://doi.org/10.21055/0370-1069-2024-1-148-153","url":null,"abstract":"The aim of the work was to determine the cytotoxicity and the influence of polycyclic derivatives of the framework series on the replicative properties of the SARS-CoV-2 virus in Vero-E6 cell culture in vitro. Materials and methods. The virus inhibiting effect of 50 adamantane and bicyclo[3.3.1]nonane derivatives with carbocyclic and heterocyclic substituents was investigated. The studies were carried out on Vero-E6 cell culture by assessing the cytopathic effect of the virus. The impact of the compounds on the replicative properties of the SARS-CoV-2 virus was estimated by the decrease in virus titer in the presence of the compounds compared to the control. Based on the virus titer values in the presence of a series of successively decreasing concentrations of the compound, the 50 % effective concentration was calculated.Results and discussion. A study of polycyclic derivatives of the framework series has identified two compounds with antiviral properties against the SARS-CoV-2 virus. Among bicyclo[3.3.1]nonane derivatives containing heterocyclic fragments, compound No. 15144 has showed an inhibitory effect against the SARS-CoV-2 virus. The protective effect of the compound was manifested in maximum tolerable concentration (MTC) (70.0 μg/ml) and ½ MTC (35.0 µg/ml). A decrease in virus titers under the influence of MTC by 0.95 lg TCD50/ml, in ½ MTC (35.0 μg/ml) – by 0.35 lg TCID50/ml has been detected. The effective concentration (EC50) value of the compound No. 15144 was 64.0 μg/ml, the MTC/EC50 ratio was 1.09. Compound No. 14838 (adamantane derivative containing carbocyclic fragments) had less pronounced antiviral activity. As a result of research, it has been established that sample No. 14838 at a dose of MTC (45.0 μg/ml) reduces the infectious titer by 0.78 lg TCD50/ml, in ½ MTC (22.5 μg/ml) by 0.15 lg TCD50/ml compared to the control. The EC50 value of compound No. 14838 was 37.0 μg/ml, the MTC/EC50 ratio was 1.22.","PeriodicalId":516710,"journal":{"name":"Problems of Particularly Dangerous Infections","volume":"42 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140743338","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The Results of Work of Infectious Disease Specialists and Epidemiologists of the Rospotrebnadzor during the Outbreak of Acute Intestinal Infections in the Republic of the Congo (Brazzaville) in 2023","authors":"N. Pshenichnaya, E. V. Naidenova, G. V. Gopatsa, D. A. Kuznetsova, L. N. Dmitrieva, A. V. Evteev, A. A. Tushinsky, S. A. Portenko, N. Obissa, M. Mpompolo, Sh. L. Elenga-Bongo, M. Inana, J.-C. Mobousse Misse, V. V. Kutyrev, V. Smolensky","doi":"10.21055/0370-1069-2024-1-102-112","DOIUrl":"https://doi.org/10.21055/0370-1069-2024-1-102-112","url":null,"abstract":"This paper provides an analysis of the results of joint work of Russian and Congolese infectious disease specialists and epidemiologists to decipher the etiology and causes of the outbreak of intestinal infections in Dolisie (Republic of the Congo) in the summer of 2023. It has been found that the increase in the incidence of intestinal infections was caused mainly by the agents of typhoid fever and dysentery; tropical malaria was a combined pathology. No cases of cholera patient detection were registered. Failure of water supply system, domestic disrepair, and low public awareness about prevention of intestinal infections contributed to the active transmission of pathogens. The combination of epidemic process manifestations testified to the aquatic nature of the outbreak. Also, cases of pathogen transmission through contact household route were recorded, food transmission was not excluded. Patients with severe and complicated forms of typhoid fever and shigellosis accounted for 50 % of those hospitalized. There was delay in seeking medical care. The available regimens of antibacterial therapy were ineffective, since there was no possibility of laboratory confirmation of the diagnosis with determination of sensitivity to drugs. Uncontrolled treatment facilitated the emergence of antibiotic resistance in pathogens, prolonged bacterial release and subsequent spread of infection. Infectious disease specialists and epidemiologists of the Rospotrebnadzor provided consulting and practical assistance to Congolese colleagues, developed and presented recommendations for optimizing anti-epidemic and therapeutic measures, taking into account the results of assessment of the causes for onset and development of the outbreak.","PeriodicalId":516710,"journal":{"name":"Problems of Particularly Dangerous Infections","volume":"45 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140743224","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Hybrid Assembly of Complete Genomes of Yersinia pestis Strains","authors":"A. V. Fedorov, Ya. M. Krasnov, E. A. Naryshkina, E. A. Sosedova, A. D. Katyshev, G. A. Eroshenko, L. M. Kukleva, N. A. Osina, V. V. Kutyrev","doi":"10.21055/0370-1069-2024-1-176-181","DOIUrl":"https://doi.org/10.21055/0370-1069-2024-1-176-181","url":null,"abstract":"The aim of the study was to assemble full-length nucleotide sequences of the chromosome and plasmids for 13 Yersinia pestis strains from 11 natural plague foci located in the Russian Federation, using data from two sequencing technologies.Materials and methods. Y. pestis strains were grown on Hottinger’s agar (pH 7.2) at 37 °C. DNA was isolated using phenol-chloroform extraction. For the MinIon genetic analyzer (Oxford Nanopore), DNA fragments were prepared by ligation according to a modified protocol. For the Ion S5 genetic analyzer (IonTorrent), sample preparation was carried out according to the standard protocol for obtaining a library with a DNA fragment size of 400 nucleotide pairs (bp). The resulting single reads were filtered by average quality Q30 for IonTorrent and Q7 for Oxford Nanopore.Results and discussion. DNA fragments containing 50 000 or more nucleotide pairs were prepared for subsequent sequencing using nanopore sequencing technology (Oxford Nanopore). The Trycycler algorithm was applied for hybrid assembly of the genome of Y. pestis strains and correction of errors arising during this process, allowing the obtainment of full-length nucleotide sequences of the chromosome and plasmids for each genome of the strain. The nucleotide sequences of the chromosomes of 13 Y. pestis strains from 11 natural foci of plague located in the Russian Federation have been deposited in the international genetic database NCBI GenBank. It has been established that to assemble full-length genomes of Y. pestis strains, a significant number of reads with a size of 50 000 bp or more is required, and the use of the Trycycler algorithm allows one to generate a more accurate assembly of complete bacterial genomes.","PeriodicalId":516710,"journal":{"name":"Problems of Particularly Dangerous Infections","volume":"35 8","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140743353","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Assessment of the Adsorption Activity of Bacterial Cells Using Yersinia pseudotuberculosis Model","authors":"R. R. Salikhov, E. M. Kuznetsova, O. A. Volokh","doi":"10.21055/0370-1069-2024-1-192-195","DOIUrl":"https://doi.org/10.21055/0370-1069-2024-1-192-195","url":null,"abstract":"Currently, the Russian Anti-Plague Institute “Microbe” produces diagnostic immunoglobulins used in laboratory diagnostics of plague pathogen. One of the important stages in obtaining this category of drugs is the process of adsorption and removal of cross-reacting antibodies to increase the specificity of the drug. For this purpose, inactivated cells of Yersinia pseudotuberculosis strains are used.The aim of the work was to assess the possibility of using immunochemical methods to analyze the adsorption properties of bacterial cells, followed by an assessment of the impact of cultivation method and conditions, and the variant of the strain used on the adsorption properties of bacterial cells.Materials and methods. Cultivation was carried out on solid and liquid nutrient media; cells were inactivated by temperature and chemical exposure. Adsorption activity was assessed using immunoblotting and inhibitory enzyme-linked immunosorbent assay. Statistical processing of the results was performed using two-factor analysis of variance.Results and discussion. The suitability of immunoblotting and inhibitory ELISA methods for qualitative and quantitative assessment of the adsorption properties of bacterial cells has been demonstrated. It has been established that the adsorption properties of bacterial cells are influenced by the method of inactivation and the application of substrate feeding; the method of cultivation does not affect the adsorption properties of cells.","PeriodicalId":516710,"journal":{"name":"Problems of Particularly Dangerous Infections","volume":"59 9","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140742926","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Synthesis of the Genome of Bacteriophage N4","authors":"G. Y. Fisunov, T. A. Semashko, D. Evsyutina, E. A. Tsoy, D. R. Kharrasov, K. S. Gumayunova, I. Tuchkov, K. A. Nikiforov, D. A. Rybalchenko, V. V. Kutyrev, V. M. Govorun","doi":"10.21055/0370-1069-2024-1-182-191","DOIUrl":"https://doi.org/10.21055/0370-1069-2024-1-182-191","url":null,"abstract":"At present, bacteriophages are considered as an alternative to antibiotics in prevention and treatment of bacterial infections, in particular cholera.The aim of the work was to demonstrate a method to obtain synthetic bacteriophage against Vibrio cholerae. Vibriophage N4 was selected as a subject for the study.Materials and methods. The genome sequence of vibriophage N4 (38.5 kb) was taken from the NCBI GenBank database. The sequence was divided into gene blocks of 1500–2000 bp. The gene blocks, in turn, were split into oligonucleotides. Sequence partitioning was carried out using the BAC-browser software that we have developed. Oligonucleotides were chemically synthesized; gene blocks were assembled from them. After that, the complete genome of vibriophage N4 was synthesized from the obtained gene blocks. The assembly of the synthetic genome took place in two stages. At the first stage, gene block cassettes of 5–7 pieces with sizes ranging from 7 to 10.5 thousand bp were generated via homologous recombination in yeast. The resulting cassettes were then amplified and used for in vitro assembly using 5’-3’ exonuclease and thermostable DNA polymerase. The resulting preparation was used for electroporation of V. cholerae cells.Results and discussion. The synthetic genome of vibriophage N4 was delivered into the V. cholerae strain M818 O1 biovar El Tor using electroporation. As a result, the formation of lytic plaques on the lawn of V. cholerae was observed. The range of technologies we have developed: software for assembly design, enzymes and buffers for the synthesis of gene blocks and their crosslinking by homologous recombination in vitro, the method for producing large-sized assemblies in yeast can be used to obtain artificial bacteriophages with a rational genome design.","PeriodicalId":516710,"journal":{"name":"Problems of Particularly Dangerous Infections","volume":"63 5","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140742253","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Features of Distribution and Spread of Hyalomma marginatum (Acari, Ixodidae) Ticks in the Crimean Hemorrhagic Fever Focus in the Territory of Russia","authors":"N. V. Tsapko, L. I. Klimova","doi":"10.21055/0370-1069-2024-1-125-134","DOIUrl":"https://doi.org/10.21055/0370-1069-2024-1-125-134","url":null,"abstract":"The review provides the summarized and updated information on the current distribution of the tick Hyalomma marginatum in the natural Crimean hemorrhagic fever (CHF) focus in Russia. The work is based on the analysis of numerous literature sources, as well as the evidence from the personal collecting of ticks during long-term field research. In addition, the collection of ticks of the Stavropol Research Anti-Plague Institute of the Rospotrebnadzor and the database of H. marginatum collections in various regions of southern Russia were used. When delineating the boundaries of the H. marginatum areal and the CHF focus, we also deployed maps of the epidemiological survey of the focus, weekly and annual final reports on the CHF incidence from the Rospotrebnadzor Administrations. H. marginatum inhabits all regions of the Southern Federal District and the North-Caucasian Federal District, as well as the Crimean Peninsula and the south of the Saratov Region. The northern border of the areal reaches the Lugansk People’s Republic, Rostov, Volgograd, and Saratov Regions. H. marginatum is widely disseminated in the territory of Kalmykia and the Astrakhan Region. In the North Caucasus, it inhabits the entire flatland up to the foothills of the Greater Caucasus. The tick is widely distributed in the Stavropol Territory, populating the entire region. In the mountainous part of the Krasnodar Territory, this species is absent, but common in the rest of the areas. Beyond that, it is found on the Black Sea coast. In Karachay-Cherkessia, Kabardino-Balkaria, North Ossetia and Ingushetia, the tick lives in the northern steppe regions of the republics, in some places it invades the foothills. In Chechnya and Dagestan, the species widely inhabits the steppes and semi-deserts of the Terek-Kuma Interfluve. Moreover, in Dagestan, H. marginatum lives across the plain and foothill territory of the republic and even reaches the highlands up to a height of more than 2000 m above sea level. In addition, it is widely disseminated on the Crimean peninsula, both the flatland and the mountainous part.","PeriodicalId":516710,"journal":{"name":"Problems of Particularly Dangerous Infections","volume":"35 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140742084","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"West Nile Fever: Analysis of the Epidemiological Situation in the Russian Federation in 2023, Forecast for 2024","authors":"E. Putintseva, S. K. Udovichenko, D. Nikitin, N. V. Boroday, A. Antonov, A. V. Toporkov","doi":"10.21055/0370-1069-2024-1-89-101","DOIUrl":"https://doi.org/10.21055/0370-1069-2024-1-89-101","url":null,"abstract":"An analysis of the epidemiological situation on West Nile fever (WNF) in the Russian Federation in 2023 has revealed an increase in the number of cases (210) relative to the year 2022 by 6.3 times, the long-term average value by 1.2 times. Manifestations of the epidemic process were characterized by a significant expansion in the number of territories, where cases of the disease were confirmed (24 constituent entities, including in 13 – for the first time); a long epidemic season; an increase in the proportion of cases with a severe clinical course and fatality rate, which significantly exceeded the long-term average across Russia (8.5 and 1.2 %, respectively). Patients with fever and other similar manifestations of WNF were examined for the presence of the disease markers in 50 entities of the Russian Federation. Continued trend towards a decrease in the volume of diagnostic studies carried out by medical organizations and an increase in the time required for the etiological deciphering of disease cases has been established. Serological examination of sample groups of healthy population was performed in 65 entities. Epizootiological monitoring was carried out in 74 entities, rate of infection of carriers and vectors with West Nile virus (WNV) was confirmed in 14 entities. In the territory of the European part of Russia and the North Caucasus, the circulation of WNV lineages 1, 2 and 4 with the dominance of WNV lineage 2 has been established. Data on the genetic heterogeneity of WNV lineage 2 strains that circulated in Russia in 2023 have been obtained. Based on an analysis of climatic factors, a forecast of WNF incidence in the Russian Federation for 2024 was prepared.","PeriodicalId":516710,"journal":{"name":"Problems of Particularly Dangerous Infections","volume":"6 10","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140741278","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Epidemiological Situation on Cholera in the Russian Federation in 2023 and Forecast for 2024","authors":"A. Y. Popova, A. Noskov, E. Ezhlova, V. D. Kruglikov, E. Monakhova, O. Chemisova, A. A. Lopatin, S. Ivanova, O. A. Podoynitsyna, A. S. Vodopyanov, D. A. Levchenko, I. V. Savina","doi":"10.21055/0370-1069-2024-1-76-88","DOIUrl":"https://doi.org/10.21055/0370-1069-2024-1-76-88","url":null,"abstract":"The paper presents an analysis and assessment of risks of complication of epidemiological situation regarding cholera in the Russian Federation and a forecast for 2024. It briefly characterizes the dynamics of the epidemic process around the world during the last decade (2013–2022). The forecast of cholera importation into the Russian Federation, due to activity of the epidemic process in endemic countries, has been confirmed. In 2023, two cases of cholera importation from India were reported. It was established that the toxigenic strains isolated from patients belonged to the currently dominant in the world “post-Haitian” group, including in India and Bangladesh, with the genotype ctxB7 tcpACIRS rtxA4a VSP-IIΔ0495-0512. Furthermore, non-toxigenic Vibrio cholerae O1 strains were isolated from samples of biological material from persons arriving from India, containing preCTX prophage and distinct from the strain (ctxAB– tcpAEТ–) isolated from a patient with acute intestinal infection (Zaporozhye Region, Melitopol). Nontoxigenic NAG vibrios were isolated from 13 patients with acute intestinal infections, which is 1.9 times more than in 2022. Regardless of importations, a strain of V. cholerae O1 (ctxB1+tcpAEТ) of the “pre-Haitian” group was isolated from a water sample of a surface reservoir. 52 non-toxigenic V. сholerae O1 strains were found on the territory of 11 constituent entities of the Russian Federation, which is 18.9 % more than in 2022. In 2024, epidemiological risks of cholera importation from endemic countries to any administrative territory of the Russian Federation remain. The risks of epidemic manifestations of cholera are especially high in the territories of the constituent entities of the Russian Federation which are under ongoing emergency, due to migration processes, and the impact of other risk-forming factors that contribute to an increase in the degree of contact of the population with water bodies contaminated with cholera vibrios. If epidemic foci of cholera are to emerge in a neighboring country, there will be a high probability of spread of this infection in the stated constituent entities of the Russian Federation and in other territories of southern Russia. In the absence of epidemic manifestations of cholera, the possibility of occasional detection of toxigenic O1 serogroup strains in water samples due to unidentified introductions from cholera-affected areas cannot be ruled out.","PeriodicalId":516710,"journal":{"name":"Problems of Particularly Dangerous Infections","volume":"35 14","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140744519","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Genetic Profile of Brucella melitensis Strains Isolated on the Territory of the Russian Federation, Based on Analysis of Single Nucleotide Polymorphisms Following Whole Genome Sequencing","authors":"I. V. Kuznetsova, D. Kovalev, S. Pisarenko, O. Bobrysheva, N. Shapakov, A. M. Zhirov, N. S. Safonova, D. Ponomarenko, A. Khachaturova, E. Zhilchenko, N. Serdyuk, A. Kulichenko","doi":"10.21055/0370-1069-2024-1-154-161","DOIUrl":"https://doi.org/10.21055/0370-1069-2024-1-154-161","url":null,"abstract":"The aim of the work was to conduct a comparative phylogenetic analysis based on wgSNP of complete genomes of Brucella melitensis strains circulating in the territory of the Russian Federation.Materials and methods. wgSNP typing of 412 B. melitensis strains of the main genetic lineages of brucella from different regions of the world, including 64 strains isolated in the regions of the European and Asian parts of the Russian Federation, was performed. DNA sequencing was conducted on the “Ion GeneStudio S5 Plus” platform (“Life Technologies”, USA) using the “Ion Plus Fragment Library Kit library preparation” (“Life Technologies”, USA), according to the “Ion 520™ & Ion 530™ Kit – Chef” protocol (Revision D.0).Results and discussion. It has been established that the strains circulating in Russia belong mainly to genotype II, which has a wide geographical distribution across the territory of Eurasia. At the same time, subgenotype IIh prevails in the regions of Siberia, and Iii – in the European territory of the country. For the first time, sets of specific SNPs have been identified that allow for intraspecific differentiation of B. melitensis strains. The obtained results made it possible to determine the probable routes of introduction of the causative agent of brucellosis into the territory of the Russian Federation from China and the countries of the Middle East. The prospect of using an optimized wgSNP typing scheme to solve urgent problems in the field of molecular epidemiology of brucellosis is demonstrated. It includes determining the genotype and subgenotype of the pathogen associated with the probable geographical region of origin of infection, and identifying the genetic relations between strains with high accuracy.","PeriodicalId":516710,"journal":{"name":"Problems of Particularly Dangerous Infections","volume":"4 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140742309","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}