Altex-Alternatives To Animal Experimentation最新文献

筛选
英文 中文
Animal research ethics as interaction of research ethics, animal ethics, and (animal protection) law. 动物研究伦理是研究伦理、动物伦理和(动物保护)法律的互动。
IF 5.6 2区 医学
Altex-Alternatives To Animal Experimentation Pub Date : 2023-01-01 DOI: 10.14573/altex.2301171
Felicitas Selter, Tatiana Hetzel, Hannes Kahrass, Marcel Mertz
{"title":"Animal research ethics as interaction of research ethics, animal ethics, and (animal protection) law.","authors":"Felicitas Selter, Tatiana Hetzel, Hannes Kahrass, Marcel Mertz","doi":"10.14573/altex.2301171","DOIUrl":"https://doi.org/10.14573/altex.2301171","url":null,"abstract":"","PeriodicalId":51231,"journal":{"name":"Altex-Alternatives To Animal Experimentation","volume":"40 3","pages":"541-544"},"PeriodicalIF":5.6,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10203268","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Proceedings of a workshop to address animal methods bias in scientific publishing. 解决科学出版中动物方法偏见的研讨会论文集。
IF 5.6 2区 医学
Altex-Alternatives To Animal Experimentation Pub Date : 2023-01-01 Epub Date: 2022-10-31 DOI: 10.14573/altex.2210211
Catharine E Krebs, Celean Camp, Helder Constantino, Lilas Courtot, Owen Kavanagh, Sofia Batista Leite, Judith Madden, Alicia Paini, Brinda Poojary, Ignacio J Tripodi, Emily R Trunnell
{"title":"Proceedings of a workshop to address animal methods bias in scientific publishing.","authors":"Catharine E Krebs,&nbsp;Celean Camp,&nbsp;Helder Constantino,&nbsp;Lilas Courtot,&nbsp;Owen Kavanagh,&nbsp;Sofia Batista Leite,&nbsp;Judith Madden,&nbsp;Alicia Paini,&nbsp;Brinda Poojary,&nbsp;Ignacio J Tripodi,&nbsp;Emily R Trunnell","doi":"10.14573/altex.2210211","DOIUrl":"10.14573/altex.2210211","url":null,"abstract":"<p><p>Animal methods bias in scientific publishing is a newly defined type of publishing bias describing a preference for animal-based methods where they may not be necessary or where nonanimal-based methods may already be suitable, which impacts the likelihood or timeliness of a manuscript being accepted for publication. This article covers the output from a workshop between stakeholders in publishing, academia, industry, government, and non-governmental organizations. The intent of the workshop was to exchange perspectives on the prevalence, causes, and impact of animal methods bias in scientific publishing, as well as to explore mitigation strategies. Output from the workshop includes summaries of presentations, breakout group discussions, participant polling results, and a synthesis of recommendations for mitigation. Overall, participants felt that animal methods bias has a meaningful impact on scientific publishing, though more evidence is needed to demonstrate its prevalence. Significant consequences of this bias that were identified include the unnecessary use of animals in scientific procedures, the continued reliance on animals in research – even where suitable nonanimal methods exist, poor rates of clinical translation, delays in publication, and negative impacts on career trajectories in science. Workshop participants offered recommendations for journals, publishers, funders, governments, and other policy makers, as well as the scientific community at large, to reduce the prevalence and impacts of animal methods bias. The workshop resulted in the creation of working groups committed to addressing animal methods bias, and activities are ongoing.</p>","PeriodicalId":51231,"journal":{"name":"Altex-Alternatives To Animal Experimentation","volume":" ","pages":"677-688"},"PeriodicalIF":5.6,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40440123","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Report of the 3rd and 4th Mystery of Reactive Oxygen Species Conference. 第三届和第四届活性氧之谜会议报告。
IF 5.6 2区 医学
Altex-Alternatives To Animal Experimentation Pub Date : 2023-01-01 DOI: 10.14573/altex.2307041
Shihori Tanabe, Danielle Beaton, Vinita Chauhan, Ian Choi, Judy Choi, Laure-Alix Clerbaux, Lucia Coppola, Antonio Fernandez Dumont, Maranda Esterhuizen, Julija Filipovska, Rex FitzGerald, Ellen Fritsche, Natalia Garcia-Reyero, Anna Goralczyk, Elizabeth Huliganga, Young-Jun Kim, Jördis Klose, Cinzia La Rocca, Brigitte Landesmann, Angela Mally, Sivakumar Murugadoss, Elma Omeragic, Gladys Ouédraogo, Jorge Matias Pereira, Baki Sadi, Alexandra Schaffert, You Song, Iva Sovadinova, Tobias Stöger, Knut Erik Tollefsen, Clemens Wittwehr, Carole Yauk
{"title":"Report of the 3rd and 4th Mystery of Reactive Oxygen Species Conference.","authors":"Shihori Tanabe,&nbsp;Danielle Beaton,&nbsp;Vinita Chauhan,&nbsp;Ian Choi,&nbsp;Judy Choi,&nbsp;Laure-Alix Clerbaux,&nbsp;Lucia Coppola,&nbsp;Antonio Fernandez Dumont,&nbsp;Maranda Esterhuizen,&nbsp;Julija Filipovska,&nbsp;Rex FitzGerald,&nbsp;Ellen Fritsche,&nbsp;Natalia Garcia-Reyero,&nbsp;Anna Goralczyk,&nbsp;Elizabeth Huliganga,&nbsp;Young-Jun Kim,&nbsp;Jördis Klose,&nbsp;Cinzia La Rocca,&nbsp;Brigitte Landesmann,&nbsp;Angela Mally,&nbsp;Sivakumar Murugadoss,&nbsp;Elma Omeragic,&nbsp;Gladys Ouédraogo,&nbsp;Jorge Matias Pereira,&nbsp;Baki Sadi,&nbsp;Alexandra Schaffert,&nbsp;You Song,&nbsp;Iva Sovadinova,&nbsp;Tobias Stöger,&nbsp;Knut Erik Tollefsen,&nbsp;Clemens Wittwehr,&nbsp;Carole Yauk","doi":"10.14573/altex.2307041","DOIUrl":"10.14573/altex.2307041","url":null,"abstract":"The main MoR discussion led to further suggestions on KE terminology, including ensuring coherence to directionality in terms of the KE descriptions (e.g., specifying increase, decrease, altered, no direction, etc.) and clarifying differences in ROS and reactive oxygen and nitrogen species (RONS), and enzymatic and non-enzymatic events. The consortium highlighted the importance of the role of ROS as a KE and an associative event in the AOP framework. Additionally, participants highlighted modification to macromolecules from the resultant RONS generation (e.g., lipid peroxidation) as a relevant endpoint to include in the KE. The possibility of grouping ROS-related KEs in the AOP framework needs to be discussed further.","PeriodicalId":51231,"journal":{"name":"Altex-Alternatives To Animal Experimentation","volume":"40 4","pages":"689-693"},"PeriodicalIF":5.6,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54232059","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Beyond Animal Testing Index: Benchmarking tool for a world beyond animal testing_suppl1 超越动物测试指数:超越动物测试世界的基准工具
IF 5.6 2区 医学
Altex-Alternatives To Animal Experimentation Pub Date : 2023-01-01 DOI: 10.14573/altex.2304161s1
C. Krul
{"title":"Beyond Animal Testing Index: Benchmarking tool for a world beyond animal testing_suppl1","authors":"C. Krul","doi":"10.14573/altex.2304161s1","DOIUrl":"https://doi.org/10.14573/altex.2304161s1","url":null,"abstract":"","PeriodicalId":51231,"journal":{"name":"Altex-Alternatives To Animal Experimentation","volume":"44 1","pages":""},"PeriodicalIF":5.6,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86484080","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Russell and Burch's 3Rs then and now: The case of Switzerland. 拉塞尔和伯奇当时和现在的3R:瑞士的情况。
IF 5.6 2区 医学
Altex-Alternatives To Animal Experimentation Pub Date : 2023-01-01 Epub Date: 2023-06-15 DOI: 10.14573/altex.2303061
Christian Rodriguez Perez, Kirsten Persson, Rosa M Cajiga Morales, Bernice S Elger, David M Shaw
{"title":"Russell and Burch's 3Rs then and now: The case of Switzerland.","authors":"Christian Rodriguez Perez,&nbsp;Kirsten Persson,&nbsp;Rosa M Cajiga Morales,&nbsp;Bernice S Elger,&nbsp;David M Shaw","doi":"10.14573/altex.2303061","DOIUrl":"10.14573/altex.2303061","url":null,"abstract":"<p><p>Since Russell and Burch introduced and defined the 3Rs, i.e., the replacement, reduction, and refinement of animal use in research, in 1959, different definitions have emerged and been implemented in guidelines and policies. Switzerland is known for having some of the most restrictive legislation regarding the use of animals, in which the 3Rs are also defined and implemented. To our knowledge, the purpose and definitions of the 3Rs used in the Swiss Animal Welfare Act, Animal Protection Ordinance, and Animal Experimentation Ordinance have never been compared with Russell and Burch’s original purpose and definitions. In this paper we make this comparison with two aims: to reveal ethically relevant departures from the original purpose and definitions, and to provide an ethical evaluation of the current Swiss law regarding the 3Rs. In doing so, we first expose the similarity of purposes. We then identify one risky departure from the original definition of replacement in Swiss law, which shows a problematic focus on species. Finally, we address Swiss law’s failure to apply the 3Rs in the most effective way. With respect to this last point, we discuss the need for 3R conflict resolution, the timing of application of the 3Rs, problematic prioritizations and choices of convenience as well as a solution to apply the 3Rs more effectively using Russell and Burch’s concept of total sum of distress.</p>","PeriodicalId":51231,"journal":{"name":"Altex-Alternatives To Animal Experimentation","volume":" ","pages":"635-648"},"PeriodicalIF":5.6,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9820153","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
A human iPSC-based in vitro neural network formation assay to investigate neurodevelopmental toxicity of pesticides. 基于人类ipsc的体外神经网络形成实验研究农药的神经发育毒性。
IF 5.6 2区 医学
Altex-Alternatives To Animal Experimentation Pub Date : 2023-01-01 DOI: 10.14573/altex.2206031
Kristina Bartmann, Farina Bendt, Arif Dönmez, Daniel Haag, H Eike Keßel, Stefan Masjosthusmann, Christopher Noel, Ji Wu, Peng Zhou, Ellen Fritsche
{"title":"A human iPSC-based in vitro neural network formation assay to investigate neurodevelopmental toxicity of pesticides.","authors":"Kristina Bartmann,&nbsp;Farina Bendt,&nbsp;Arif Dönmez,&nbsp;Daniel Haag,&nbsp;H Eike Keßel,&nbsp;Stefan Masjosthusmann,&nbsp;Christopher Noel,&nbsp;Ji Wu,&nbsp;Peng Zhou,&nbsp;Ellen Fritsche","doi":"10.14573/altex.2206031","DOIUrl":"https://doi.org/10.14573/altex.2206031","url":null,"abstract":"<p><p>Proper brain development is based on the orchestration of key neurodevelopmental processes (KNDP), including the for­mation and function of neural networks. If at least one KNDP is affected by a chemical, an adverse outcome is expected. To enable a higher testing throughput than the guideline animal experiments, a developmental neurotoxicity (DNT) in vitro testing battery (DNT IVB) comprising a variety of assays that model several KNDPs was set up. Gap analysis revealed the need for a human-based assay to assess neural network formation and function (NNF). Therefore, we established the human NNF (hNNF) assay. A co-culture comprised of human induced pluripotent stem cell (hiPSC)-derived excitatory and inhibitory neurons as well as primary human astroglia was differentiated for 35 days on microelectrode arrays (MEA), and spontaneous electrical activity, together with cytotoxicity, was assessed on a weekly basis after washout of the compounds 24 h prior to measurements. In addition to the characterization of the test system, the assay was challenged with 28 com­pounds, mainly pesticides, identifying their DNT potential by evaluating specific spike-, burst-, and network parameters. This approach confirmed the suitability of the assay for screening environmental chemicals. Comparison of benchmark con­centrations (BMC) with an NNF in vitro assay (rNNF) based on primary rat cortical cells revealed differences in sensitivity. Together with the successful implementation of hNNF data into a postulated stressor-specific adverse outcome pathway (AOP) network associated with a plausible molecular initiating event for deltamethrin, this study suggests the hNNF assay as a useful complement to the DNT IVB.</p>","PeriodicalId":51231,"journal":{"name":"Altex-Alternatives To Animal Experimentation","volume":"40 3","pages":"452-470"},"PeriodicalIF":5.6,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9841791","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
A rodent thyroid-liver chip to capture thyroid toxicity on organ function level. 从器官功能水平捕捉甲状腺毒性的啮齿动物甲状腺肝芯片。
IF 5.6 2区 医学
Altex-Alternatives To Animal Experimentation Pub Date : 2023-01-01 DOI: 10.14573/altex.2108262
Diana Karwelat, Julia Kühnlenz, Thomas Steger-Hartmann, Remi Bars, Helen Tinwell, Uwe Marx, Sophie Bauer, Oliver Born, Marian Raschke
{"title":"A rodent thyroid-liver chip to capture thyroid toxicity on organ function level.","authors":"Diana Karwelat,&nbsp;Julia Kühnlenz,&nbsp;Thomas Steger-Hartmann,&nbsp;Remi Bars,&nbsp;Helen Tinwell,&nbsp;Uwe Marx,&nbsp;Sophie Bauer,&nbsp;Oliver Born,&nbsp;Marian Raschke","doi":"10.14573/altex.2108262","DOIUrl":"https://doi.org/10.14573/altex.2108262","url":null,"abstract":"<p><p>Endocrine disruption by environmental chemicals continues to be a concern for human safety. The rat, a widely used model organism in toxicology, is very sensitive to chemical-induced thyroid perturbation, e.g., histopathological alterations in thyroid tissue. Species differences in the susceptibility to thyroid perturbation lead to uncertainty in human safety risk assessments. Hazard identification and characterization of chemically induced thyroid perturbation would therefore benefit from in vitro models addressing different mechanisms of action in a single functional assay, ideally across species. We here introduce a rat thyroid-liver chip that enables simultaneous identification of direct and indirect (liver-mediated) thyroid perturbation on organ-level functions in vitro. A second manuscript describes our work toward a human thyroid-liver chip (Kühnlenz et al., 2022). The presented microfluidic model consisting of primary rat thyroid follicles and liver 3D spheroids maintains a tissue-specific phenotype for up to 21 days. More precisely, the thyroid model exhibits a follicular architecture expressing basolateral and apical markers and secretes T4. Likewise, liver spheroids retain hepatocellular characteristics, e.g., a stable release of albumin and urea, the presence of bile canalicular networks, and the formation of T4-glucuronide. Experiments with reference chemicals demonstrated proficiency to detect direct and indirect mechanisms of thyroid perturbation through decreased thyroid hormone secretion and increased gT4 formation, respectively. Prospectively this rat thyroid-liver chip model, together with its human counterpart, may support a species-specific quantitative in vitro to in vivo extrapolation to improve a data-driven and evidence-based human safety risk assessment with significant contributions to the 3R principles.</p>","PeriodicalId":51231,"journal":{"name":"Altex-Alternatives To Animal Experimentation","volume":"40 1","pages":"83-102"},"PeriodicalIF":5.6,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10539886","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
A microfluidic thyroid-liver platform to assess chemical safety in humans. 微流控甲状腺-肝脏平台评估人体化学品安全性。
IF 5.6 2区 医学
Altex-Alternatives To Animal Experimentation Pub Date : 2023-01-01 DOI: 10.14573/altex.2108261
Julia Kühnlenz, Diana Karwelat, Thomas Steger-Hartmann, Marian Raschke, Sophie Bauer, Özlem Vural, Uwe Marx, Helen Tinwell, Remi Bars
{"title":"A microfluidic thyroid-liver platform to assess chemical safety in humans.","authors":"Julia Kühnlenz,&nbsp;Diana Karwelat,&nbsp;Thomas Steger-Hartmann,&nbsp;Marian Raschke,&nbsp;Sophie Bauer,&nbsp;Özlem Vural,&nbsp;Uwe Marx,&nbsp;Helen Tinwell,&nbsp;Remi Bars","doi":"10.14573/altex.2108261","DOIUrl":"https://doi.org/10.14573/altex.2108261","url":null,"abstract":"<p><p>Thyroid hormones (THs) are crucial regulators of human metabolism and early development. During the safety assessment of plant protection products, the human relevance of chemically induced TH perturbations observed in test animals remains uncertain. European regulatory authorities request follow-up in vitro studies to elucidate human-relevant interferences on thyroid gland function or TH catabolism through hepatic enzyme induction. However, human in vitro assays based on single molecular initiating events poorly reflect the complex TH biology and related liver-thyroid axis. To address this complexity, we present human three-dimensional thyroid and liver organoids with key functions of TH metabolism. The thyroid model resembles in vivo-like follicular architecture and a TSH-dependent triiodothyronine synthesis over 21 days, which is inhibited by methimazole. The HepaRG-based liver model, secreting the critical TH-binding proteins albumin and thyroxine-binding globulin, emulates an active TH catabolism via the formation of glucuronidated and sulfated thyroxine (gT4/sT4). Activation of the nuclear receptors PXR and AHR was demonstrated via the induction of specific CYP isoenzymes by rifampicin, pregnenolone-16α-carbonitrile, and β-naphthoflavone. However, this nuclear receptor activation, assumed to regulate UDP-glucuronosyltransferases and sulfotransferases, appeared to have no effect on gT4 and sT4 formation in this human-derived hepatic cell line model. Finally, established single-tissue models were successfully co-cultured in a perfused two-organ chip for 21 days. In conclusion, this model presents a first step towards a complex multimodular human platform that will help to identify both direct and indirect thyroid disruptors that are relevant from a human safety perspective.</p>","PeriodicalId":51231,"journal":{"name":"Altex-Alternatives To Animal Experimentation","volume":"40 1","pages":"61-82"},"PeriodicalIF":5.6,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10541617","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
A call for a Human Exposome Project. 呼吁开展人体暴露计划。
IF 5.6 2区 医学
Altex-Alternatives To Animal Experimentation Pub Date : 2023-01-01 DOI: 10.14573/altex.2301061
Thomas Hartung
{"title":"A call for a Human Exposome Project.","authors":"Thomas Hartung","doi":"10.14573/altex.2301061","DOIUrl":"https://doi.org/10.14573/altex.2301061","url":null,"abstract":"<p><p>Four decades of the Human Genome Project and its consequences have shown how the entrepreneurial state, through significant investment into science, can drive scientific progress and advance biomedicine. A certain fraction of diseases can now be explained as caused by genetics, and a more significant fraction as impacted by genetics. Besides another fraction caused by pathogens, the third and probably largest impactor is exposure, i.e., the many physicochemical and lifestyle factors. This article makes the case that it is time to start a Human Exposome Project, which systematically explores and catalogs the exposure side of human health and disease. The envisioned Human Exposome Project needs to be more than a scaled exposomics approach, aiming to assess the totality of relevant exposures through ~omics of human body fluids and forming exposure hypotheses. Exposomics is increasingly complemented by exposure science and biomonitoring to measure exposure, mechanistic understanding, human-relevant microphysiological systems, big data, and artificial intelligence (AI) to mine these data and integrate pieces of evidence. The potential impact of AI on a possible Human Exposome Project is so substantial that we should speak of exposome intelligence (EI) because this allows us to expand our limited current knowledge to the big unknown unknowns of threats to human health.</p>","PeriodicalId":51231,"journal":{"name":"Altex-Alternatives To Animal Experimentation","volume":"40 1","pages":"4-33"},"PeriodicalIF":5.6,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9614323","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Novel prediction models for genotoxicity based on biomarker genes in human HepaRG™ cells. 基于人类HepaRG™细胞生物标记基因的新型遗传毒性预测模型。
IF 5.6 2区 医学
Altex-Alternatives To Animal Experimentation Pub Date : 2023-01-01 DOI: 10.14573/altex.2206201
Anouck Thienpont, Stefaan Verhulst, Leo A Van Grunsven, Vera Rogiers, Tamara Vanhaecke, Birgit Mertens
{"title":"Novel prediction models for genotoxicity based on biomarker genes in human HepaRG™ cells.","authors":"Anouck Thienpont,&nbsp;Stefaan Verhulst,&nbsp;Leo A Van Grunsven,&nbsp;Vera Rogiers,&nbsp;Tamara Vanhaecke,&nbsp;Birgit Mertens","doi":"10.14573/altex.2206201","DOIUrl":"https://doi.org/10.14573/altex.2206201","url":null,"abstract":"<p><p>Transcriptomics-based biomarkers are promising new approach methodologies (NAMs) to identify molecular events underlying the genotoxic mode of action of chemicals. Previously, we developed the GENOMARK biomarker, consisting of 84 genes selected based on whole genomics DNA microarray profiles of 24 (non-)genotoxic reference chemicals covering different modes of action in metabolically competent human HepaRG™ cells. In the present study, new prediction models for genotoxicity were developed based on an extended reference dataset of 38 chemicals including existing as well as newly generated gene expression data. Both unsupervised and supervised machine learning algorithms were used, but as unsupervised machine learning did not clearly distinguish between groups, the performance of two supervised machine learning algorithms, i.e., support vector machine (SVM) and random forest (RF), was evaluated. More specifically, the predictive accuracy was compared, the sensitivity to outliers for one or more biomarker genes was assessed, and the prediction performance for 10 misleading positive chemicals exposed at their IC10 concentration was determined. In addition, the applicability of both prediction models on a publicly available gene expression dataset, generated with RNA-sequencing, was investigated. Overall, the RF and SVM models were complementary in their classification of chemicals for genotoxicity. To facilitate data analysis, an online application was developed, combining the outcomes of both prediction models. This research demonstrates that the combination of gene expression data with supervised machine learning algorithms can contribute to the ongoing paradigm shift towards a more human-relevant in vitro genotoxicity testing strategy without the use of experimental animals.</p>","PeriodicalId":51231,"journal":{"name":"Altex-Alternatives To Animal Experimentation","volume":"40 2","pages":"271-286"},"PeriodicalIF":5.6,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9616823","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
相关产品
×
本文献相关产品
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信