{"title":"The Castiglione Inscription in The Tower of London","authors":"Richard Coates","doi":"10.1093/notesj/gjad110","DOIUrl":"https://doi.org/10.1093/notesj/gjad110","url":null,"abstract":"","PeriodicalId":45476,"journal":{"name":"NOTES AND QUERIES","volume":" 40","pages":""},"PeriodicalIF":0.1,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138620010","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"文学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Antedating (in) the Oxford English Dictionary","authors":"David-Antoine Williams","doi":"10.1093/notesj/gjad106","DOIUrl":"https://doi.org/10.1093/notesj/gjad106","url":null,"abstract":"","PeriodicalId":45476,"journal":{"name":"NOTES AND QUERIES","volume":"1 1","pages":""},"PeriodicalIF":0.1,"publicationDate":"2023-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139201038","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"文学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A Charm Against Thieves as a Textual Amulet","authors":"T. Turville-Petre","doi":"10.1093/notesj/gjad104","DOIUrl":"https://doi.org/10.1093/notesj/gjad104","url":null,"abstract":"","PeriodicalId":45476,"journal":{"name":"NOTES AND QUERIES","volume":"35 1","pages":""},"PeriodicalIF":0.1,"publicationDate":"2023-11-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139208679","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"文学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Juliet’s Age Reconsidered","authors":"Kazuaki Ota","doi":"10.1093/notesj/gjad116","DOIUrl":"https://doi.org/10.1093/notesj/gjad116","url":null,"abstract":"","PeriodicalId":45476,"journal":{"name":"NOTES AND QUERIES","volume":"15 1","pages":""},"PeriodicalIF":0.1,"publicationDate":"2023-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139214414","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"文学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
NOTES AND QUERIESPub Date : 2023-11-25DOI: 10.1101/2023.02.10.528092
Rachel Zilinskas, Chunlin Li, Xiaotong Shen, Wei Pan, Tianzhong Yang
{"title":"Inferring a directed acyclic graph of phenotypes from GWAS summary statistics.","authors":"Rachel Zilinskas, Chunlin Li, Xiaotong Shen, Wei Pan, Tianzhong Yang","doi":"10.1101/2023.02.10.528092","DOIUrl":"10.1101/2023.02.10.528092","url":null,"abstract":"<p><p>Estimating phenotype networks is a growing field in computational biology. It deepens the understanding of disease etiology and is useful in many applications. In this study, we present a method that constructs a phenotype network by assuming a Gaussian linear structure model embedding a directed acyclic graph (DAG). We utilize genetic variants as instrumental variables and show how our method only requires access to summary statistics from a genome-wide association study (GWAS) and a reference panel of genotype data. Besides estimation, a distinct feature of the method is its summary statistics-based likelihood ratio test on directed edges. We applied our method to estimate a causal network of 29 cardiovascular-related proteins and linked the estimated network to Alzheimer's disease (AD). A simulation study was conducted to demonstrate the effectiveness of this method. An R package sumdag implementing the proposed method, all relevant code, and a Shiny application are available at https://github.com/chunlinli/sumdag.</p>","PeriodicalId":45476,"journal":{"name":"NOTES AND QUERIES","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-11-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10690198/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"83565499","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"文学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"<i>The Devil of the Vault</i> and John Hanson’s <i>Time is a Turncoat</i>","authors":"Charles Cathcart","doi":"10.1093/notesj/gjad107","DOIUrl":"https://doi.org/10.1093/notesj/gjad107","url":null,"abstract":"Journal Article The Devil of the Vault and John Hanson’s Time is a Turncoat Get access Charles Cathcart Charles Cathcart The Open University, UK charles.cathcart@open.ac.uk Search for other works by this author on: Oxford Academic Google Scholar Notes and Queries, gjad107, https://doi.org/10.1093/notesj/gjad107 Published: 11 November 2023","PeriodicalId":45476,"journal":{"name":"NOTES AND QUERIES","volume":"27 5","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135086630","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"文学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The Definite Article in Old English ‘Nicknames’","authors":"T K Alphey","doi":"10.1093/notesj/gjad103","DOIUrl":"https://doi.org/10.1093/notesj/gjad103","url":null,"abstract":"","PeriodicalId":45476,"journal":{"name":"NOTES AND QUERIES","volume":"24 24","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135087184","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"文学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A Reference to Emily Dickinson in a Letter From Martha Ann (Cushing) Esty to Her Sister Anna Louisa Cushing","authors":"Domhnall Mitchell","doi":"10.1093/notesj/gjad108","DOIUrl":"https://doi.org/10.1093/notesj/gjad108","url":null,"abstract":"","PeriodicalId":45476,"journal":{"name":"NOTES AND QUERIES","volume":"6 5","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135087253","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"文学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"An Anglo-Saxon Reinterpretation of the Theory of Caesura","authors":"Mar Gutiérrez-Ortiz","doi":"10.1093/notesj/gjad078","DOIUrl":"https://doi.org/10.1093/notesj/gjad078","url":null,"abstract":"","PeriodicalId":45476,"journal":{"name":"NOTES AND QUERIES","volume":" 29","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135293046","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"文学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"<i>King John</i> is Written by Shakespeare and Peele","authors":"Thomas Merriam","doi":"10.1093/notesj/gjad102","DOIUrl":"https://doi.org/10.1093/notesj/gjad102","url":null,"abstract":"","PeriodicalId":45476,"journal":{"name":"NOTES AND QUERIES","volume":"271 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135685231","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"文学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}