{"title":"Statistical features extraction for multivariate pattern analysis in meditation EEG using PCA","authors":"Laxmi Shaw, A. Routray","doi":"10.1109/EMBSISC.2016.7508624","DOIUrl":"https://doi.org/10.1109/EMBSISC.2016.7508624","url":null,"abstract":"This work was undertaken to study the specific statistical features of EEG data collected during meditation (Kriya Yoga) and normal conditions. The meditation practice changes the attentional allocation in the human brain to visualize this; statistical features are carefully calculated from different wavelet coefficients to categorize two diverse groups (i.e. Meditators and Non-Meditators). The entire time series of EEG data divided into overlapping segments, and statistical parameters calculated for each of these segments. Instead of using all the data points, we used only a few higher order statistical measures such as variance, kurtosis, relative band energy, Shannon entropy, and Renyi entropy obtained from the data segments. A standard clustering technique, i.e. Principal Component Analysis (PCA) used to get the distinct pattern from the statistical features in EEG. In this paper, we presented a clustering paradigm that used for the pattern analysis between meditators and non-meditators. We measured the EEG signal using 64 channels, with some peripheral physiological measures. 23 participants with varying experience in meditation practice and ten non-meditators (control group) are considered to visualize underlying clusters within the statistical features.","PeriodicalId":361773,"journal":{"name":"2016 IEEE EMBS International Student Conference (ISC)","volume":"46 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130913308","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A critical examination of three approaches for the design of passive ankle walking assist devices","authors":"Scott Pardoel, Marc Doumit","doi":"10.1109/EMBSISC.2016.7508623","DOIUrl":"https://doi.org/10.1109/EMBSISC.2016.7508623","url":null,"abstract":"Current ankle assist devices aim to improve the user's walking ability and stability. Despite the success of classical ankle orthoses and powered exoskeletons, these devices are still facing challenges that drive their continued development. This paper will first introduce the distinct types of ankle devices for walking assist. Then, three common approaches used in the design and development of these devices will be discussed and analyzed. These are inverse dynamics, the inverted pendulum model, and the design based on joint quasi-stiffness. The inverse dynamics approach simplifies all soft tissue contributions to a single force moment couple regardless of the source of the forces, thus making the prediction of metabolic cost very difficult. The inverted pendulum model is focused on the conservation of energy as the center of mass advances. It assumes rigid limb support and does not consider the ankle joint or the advancement of the center of pressure along the foot. The quasi-stiffness design approach attempts to translate the ankle stiffness into a combination of linear zones in order to be easily replicated with mechanical spring elements. The stiffness of the biological ankle is highly variable and dependent upon the speed of walking. Therefore devices using mechanical springs with non variable stiffness characteristics will only be effective within a narrow range of walking speeds. The current challenges faced by passive walking assist devices may be due to the methods used to assess the requirements of the body. If the parameters advised by these analytical approaches do not match the needs of the human body, the resulting devices will be inherently flawed.","PeriodicalId":361773,"journal":{"name":"2016 IEEE EMBS International Student Conference (ISC)","volume":"24 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114192494","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Cost-sensitive classification on class-balanced ensembles for imbalanced non-coding RNA data","authors":"Bashier ElKarami, A. Alkhateeb, L. Rueda","doi":"10.1109/EMBSISC.2016.7508607","DOIUrl":"https://doi.org/10.1109/EMBSISC.2016.7508607","url":null,"abstract":"Many bioinformatics data sets have class-imbalanced data, where the number of samples in each class is not equal. Since most of data sets contain usual versus unusual cases, e.g. cancer versus normal or miRNAs versus other non-coding RNA, where the minority class with the least number of samples is the interesting class that contains the unusual cases. The learning models based on the standard classifiers, such as the support vector machine (SVM), random forest and k-NN are usually biased towards the majority class, which means that the classifier is most likely to predict the samples from the interesting class inaccurately. Thus, handling class-imbalanced data set has gained the researchers interests recently. A combination of proper feature selection, a cost-sensitive classifier and ensembling based on random forest method (BCE-CSC-RF) is proposed to handle the class-imbalanced data. Random class-balanced ensembles are built individually. Then, each ensemble is used as a training pool to classify the rest of out-bagged samples. Samples in each ensemble will be classified using class-sensitive classifier that incorporates random forest. The sample will be classified by selecting the most often class has been voted-for in all samples appearances in all the formed ensembles. A set of performance measurements including a geometric measurement suggests that the model can improve the classification of the minority class samples.","PeriodicalId":361773,"journal":{"name":"2016 IEEE EMBS International Student Conference (ISC)","volume":"47 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125479852","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Urogenital kinematics mesaured in the sagittal plane using a novel ultrasound image processing approach","authors":"C. Czyrnyj, Michel R. Labrosse, Linda McLean","doi":"10.1109/EMBSISC.2016.7508604","DOIUrl":"https://doi.org/10.1109/EMBSISC.2016.7508604","url":null,"abstract":"Stress urinary incontinence (SUI) is highly prevalent among women, and is associated with biomechanical defects in the urogenital system. Current approaches to quantifying urogenital mechanics are limited. The purpose of this research is to develop semi-automated software that compensates for in-plane translational and rotational probe motion during kinematic analyses based on dynamic sagittal-plane ultrasound imaging. Coordinate systems were constructed in each video frame in order to build transformation matrices that would compensate for probe motion. Once the transformation matrices were applied to each frame, kinematics could be calculated. The kinematics of the bladder neck (BN) and anorectal angle (ARA) were calculated in a female presenting with mild SUI performing a double-barrel cough. Displacement and velocity curves were similar to those reported in the literature, while accelerations were difficult to compare due to differences between our task and the only task analyzed in the literature. The results appear to reflect adequate pelvic floor muscle activation, indicating that in this woman, SUI may be due to another urogenital defect, such as urethral hypermobility or sphincter deficiency. This paper presents a proof of concept for software development. As a next step, inter-and intra-user reliability of the software output will be evaluated.","PeriodicalId":361773,"journal":{"name":"2016 IEEE EMBS International Student Conference (ISC)","volume":"14 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131746587","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Modeling and analysis of a novel approach for particle separation using time-varying amplitude dielectrophoresis","authors":"Paresa Modarres, M. Tabrizian","doi":"10.1109/EMBSISC.2016.7508622","DOIUrl":"https://doi.org/10.1109/EMBSISC.2016.7508622","url":null,"abstract":"Modeling and simulation results for micro-scale particle separation based on time-varying amplitude dielectrophoresis is presented. As an example, we demonstrate how a sawtooth signal can be implemented to sort particles in a heterogeneous polystyrene population by tuning the signal parameters such as the signal period. The modeling analysis predicts polystyrene microsphere sorting with a minimum size difference of 1 μm in diameter. The presented platform is a step forward towards realizing advanced electrokinetic techniques for particle manipulation for fully automated lab-on-a-chip applications.","PeriodicalId":361773,"journal":{"name":"2016 IEEE EMBS International Student Conference (ISC)","volume":"61 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126502121","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Portable real-time PCR system using tablet-based fluorescence imaging","authors":"Hayden Bialek, Jacob Dawes, D. Heer, M. Johnston","doi":"10.1109/EMBSISC.2016.7508599","DOIUrl":"https://doi.org/10.1109/EMBSISC.2016.7508599","url":null,"abstract":"The quantitative polymerase chain reaction (qPCR) is a key medical tool for diagnosing and monitoring viral infections. Due to the high cost and large size of existing qPCR machines, it is rarely viable for remote and resource-limited areas. A portable and affordable instrument for qPCR could make a significant difference in the accessibility of this important diagnostic technique across the world. In this work, a solution is proposed that uses widely available technology found in mobile phones and tablet computers, integrated with an affordable battery-powered thermal cycler, to cheaply and effectively run real-time PCR reactions. The demonstrated prototype performs 2-step and 3-step PCR reactions, and fluorescence is measured in real time using a tablet-integrated camera. These results serve as a proof-of-concept for the use of smartphones and tablets as quantitative image processing devices to enable portable, battery-powered qPCR instrumentation.","PeriodicalId":361773,"journal":{"name":"2016 IEEE EMBS International Student Conference (ISC)","volume":"15 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115121377","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Haptic feedback in lower-limb prosthesis: Combined haptic feedback and EMG control of a powered prosthesis","authors":"J. Canino, K. Fite","doi":"10.1109/EMBSISC.2016.7508600","DOIUrl":"https://doi.org/10.1109/EMBSISC.2016.7508600","url":null,"abstract":"With the incidence of disease related lower limb amputation on the rise in the United States, a decrease in the requisite time for rehabilitation is needed to ensure a better prognosis for patients. It is proposed that the incorporation of a haptic feedback training aid would do just this. This research has experimentally investigated the usage of two haptic feedback systems in conveying information pertinent to completing a single degree of freedom non-weight bearing motion tracking task in an otherwise perceptually devoid environment. This research has concluded that the usage of a sustained pressure haptic feedback modality leads to significantly improved performance when operating an electromyogram (EMG) controlled virtual or powered prosthetic limb without other perceptual input. This finding reinforces the proposed usefulness of haptic feedback in the rehabilitative setting.","PeriodicalId":361773,"journal":{"name":"2016 IEEE EMBS International Student Conference (ISC)","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122998169","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Review and analysis of recent development of lower extremity exoskeletons for walking assist","authors":"Zlatko Lovrenovic, Marc Doumit","doi":"10.1109/EMBSISC.2016.7508620","DOIUrl":"https://doi.org/10.1109/EMBSISC.2016.7508620","url":null,"abstract":"The past decades marked a significant progress in the development of exoskeletons in research and in industry. The increasing use of exoskeletons in a variety of fields is a testimony to the advancements made by this class of human mobility assistive devices. The following paper provides a review of current development in lower extremity exoskeletons that deliver walking assistance. The paper focuses on exoskeletons that work in parallel with user's legs. The paper categorizes such exoskeletons into two groups: powered and passive exoskeletons. For each category, most common exoskeletons are revealed. For each given example, a detailed description and analysis of the mechanical design, actuation, control scheme and distinguishable features is presented. The paper concludes with a discussion on the challenges and future directions associated with the creation of these mechanical devices.","PeriodicalId":361773,"journal":{"name":"2016 IEEE EMBS International Student Conference (ISC)","volume":"107 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126671311","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Simultaneous accelerometer measurements of arterial activity during benign ventricular ectopy","authors":"Natalie Kurgan Canino, Charles J. Robinson","doi":"10.1109/EMBSISC.2016.7508601","DOIUrl":"https://doi.org/10.1109/EMBSISC.2016.7508601","url":null,"abstract":"Over a 180s observation period, a 3-lead (V5) electrocardiogram (ECG) was collected in a 66 y.o. male subject with benign ventricular ectopy. Simultaneous measures were also made from two tri-axial accelerometers, one placed over the sternum and the other on the forehead. The experiment was repeated with the sensors placed over the femoral and carotid arteries. Signals were sampled at 1kHz and filtered. Ensemble averages (with ±S.D.) and raster plots were generated for each filtered time series from 200 ms before to 800 ms after the peak of each R-wave. Lag times between the R-wave peak (taken as t=0) and the prominent peaks (or valleys) of the various accelerometer signals were calculated, Pulse Transit Times (PTT) determined, and Pulse Wave Velocities (PWV) calculated, given the measured distance between each sensor placement. R-R intervals were calculated between each beat pair and sorted by shortest to longest duration. Ensemble averages and PWV calculations were then repeated by separating sinus rhythm interval pairs, and short and long R-R intervals pairs. The peak acceleration values seen in these three sets of ensemble averages were then compared to determine how normal, short and long R-R intervals influenced external pulse pressure measures.","PeriodicalId":361773,"journal":{"name":"2016 IEEE EMBS International Student Conference (ISC)","volume":"57 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124815752","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Fatemeh Zabihollahy, Bruno M. Trindade, Y. Ono, E. Lemaire
{"title":"Continuous monitoring of mechanical properties of plantar soft tissue for diabetic patients using wearable ultrasonic and force sensors","authors":"Fatemeh Zabihollahy, Bruno M. Trindade, Y. Ono, E. Lemaire","doi":"10.1109/EMBSISC.2016.7508627","DOIUrl":"https://doi.org/10.1109/EMBSISC.2016.7508627","url":null,"abstract":"Characterizing plantar soft tissue mechanical properties is essential to fully understand the potential for ulcer formation in diabetic patients. Ulcers initiate in the under layers of foot where soft tissues become stiffer. If changes in soft tissue stiffness can be detected early, foot ulcer formation may be prevented. Also, monitoring soft tissue mechanical properties could be beneficial for prosthetic and orthotic fitting, sport performance monitoring, and injury prevention and detection. This paper presents a method, using wearsport performance monitoring, and injury prevention and detection. This paper presents a method, using wearableable ultrasonic and force sensors, for continuous monitoring of plantar soft tissue stiffness at the heel. With this method, simultaneous measurement of pressure and tissue displacement at the heel was performed and pressure-displacement curves were obtained while the person was stepping. This achievement establishes a basis for future research to assess mechanical properties of plantar soft tissues in real-time for foot ulcer screening.","PeriodicalId":361773,"journal":{"name":"2016 IEEE EMBS International Student Conference (ISC)","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2016-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130674385","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}