Naho Shinde, Ryunosuke Handa, H. Furutachi, Y. Sakata, Shigehisa Akine, S. Fujinami, Masatatsu Suzuki
{"title":"Synthesis and Crystal Structure of (μ-Acetato)bis(μ-Alkoxo)dicobalt(II, III) Complex with an Unsymmetric Dinucleating Ligand","authors":"Naho Shinde, Ryunosuke Handa, H. Furutachi, Y. Sakata, Shigehisa Akine, S. Fujinami, Masatatsu Suzuki","doi":"10.2116/XRAYSTRUCT.37.13","DOIUrl":"https://doi.org/10.2116/XRAYSTRUCT.37.13","url":null,"abstract":"The bimetallic active centers of metalloproteins exhibit versatile roles; model studies using simple dinuclear metal complexes are important in order to gain insight into the biological functions of such bimetallic cores.1–5 The end-off type dinucleating ligands, having a phenolic and alcoholic oxygen as an endogenous bridge, have been used for modeling carboxylate-bridged bimetallic active sites of metalloproteins.1–5 Previously, we reported on the synthesis and characterization of a peroxo complex, [Co2(tpdb)(O2)(CH3CO2)], and a mixed-valence complex, [FeFe(tpdb)(C6H5CO2)2], having an unsymmetric dinucleating ligand with pyridyl groups (tpdb) as models for hemerythrin and purple acid phosphatase. In this paper, we report on the crystal structure of a dicobalt(II, III) mixed-valence complex, [CoII Co(tpdb)(CH3CO2)(CH3O)](ClO4)2·0.75CH3OH· 0.25CH3CN (1) (Fig. 1), which was obtained by an oxidative degradation of [Co2(tpdb)(CH3CO2)] in methanol/acetonitrile at ambient temperature under air. A mixture of Co(ClO4)2·6H2O (0.366 g, 1.0 mmol) and Htpdb (0.235 g, 0.5 mmol) in methanol/acetonitrile (3:1, 12 mL) was added to a methanol solution (5 mL) containing CH3CO2Na·3H2O (0.07 g, 0.5 mmol) and triethylamine (69 μL, 0.5 mmol) to give a dark-brown solution. Oxygen gas was bubbled for 5 min into the solution. The resulting dark-brown solution was allowed to stand for several weeks at ambient temperature under air to give single crystals of [CoCo(tpdb)(CH3CO2)(CH3O)](ClO4)2· 0.75CH3OH· 0.25CH3CN (1) suitable for X-ray crystallography. Yield: 0.28 g, 63 % (Anal. Found: C, 41.20; H, 4.37; N, 9.28%. Calcd for [CoCo(tpdb)(CH3CO2)(CH3O)](ClO4)2·1.5H2O, C31H40Cl2Co2N6O13.5: C, 41.30; H, 4.47; N, 9.32%.). It was picked up from the solution by a loop on a hand-made cold copper plate mounted inside a liquid N2 Dewar vessel at –80°C; the loop was mounted on the diffractometer. X-ray diffraction measurements were made on a Bruker D8 VENTURE diffractometer (Cu Kα radiation) at 90 K. The structure was solved by a direct method (SHELXT)8 and expanded using a Fourier technique. The structure was refined by a full-matrix least-squares method by using SHELXL 20149 (Yadokari-XG).10 All non-hydrogen atoms were refined with anisotropic displacement parameters. The hydrogen atoms were included using a riding model. For the disordered anion and solvent molecules, occupancy factors were refined using distance/ADP restraints. The crystal data are summarized in Table 1. The X-ray crystallography of 1 reveals that the asymmetric unit contains a complex cation [CoCo(tpdb)(CH3CO2) (CH3O)], two ClO4, and 0.75 methanol and 0.25 acetonitrile molecule (Fig. S1). An ORTEP drawing of the complex cation, [CoCo(tpdb)(CH3CO2)(CH3O)] of 1, is shown in Fig. 2. Selected bond distances (Å) and angle (°) are given in Table 2. The complex cation of 1 has distinct cobalt centers that are triply bridged by alkoxo oxygens of tpdp and methoxo, and acetate group as found for closely related dicobalt(I","PeriodicalId":23922,"journal":{"name":"X-ray Structure Analysis Online","volume":null,"pages":null},"PeriodicalIF":0.2,"publicationDate":"2021-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44155383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
M. Mikuriya, Sayuri Ono, Yoshiki Koyama, R. Mitsuhashi, M. Tsuboi
{"title":"Crystal Structure of μ-Oxido-μ-phenolato-bridged Dinuclear Manganese(III) Complex of Schiff-base Ligand with Bromido Coordination","authors":"M. Mikuriya, Sayuri Ono, Yoshiki Koyama, R. Mitsuhashi, M. Tsuboi","doi":"10.2116/XRAYSTRUCT.37.9","DOIUrl":"https://doi.org/10.2116/XRAYSTRUCT.37.9","url":null,"abstract":"C7, N1, O2, O3, and O7 atoms to form a dinuclear manganese molecule A dinuclear manganese(III) complex with 2-(5-nitro-2-hydroxyphenyl)-1,3-bis(2-(5-nitro-2-hydroxybenzylideneamino)-ethyl)imidazolidine (H 3 L NO2 ) was synthesized. The crystal structure was determined by the single-crystal X-ray diffraction method at 90 K. The complex crystallized as [(C 2 H 5 ) 3 NH][Mn 2 ( μ -L NO2 )( μ -O)Br 2 ]·2THF in the orthorhombic space group Pnma with a = 14.890(2), b = 20.903(3), c = 14.7765(19)Å, V = 4599.3(11)Å 3 , D calcd = 1.621 g/cm 3 , Z = 4. The R 1 [ I > 2 σ ( I )] and wR 2 (all data) values are 0.0539 and 0.1260, respectively, for all 5416 independent reflections. The two manganese(III) atoms are bridged by a phenolato-oxygen atom of L NO23– and a μ -oxido-oxygen atom, where each manganese(III) atom is further coordinated by phenolato-oxygen, imino- and imidazolidine-nitrogen atoms of L NO2","PeriodicalId":23922,"journal":{"name":"X-ray Structure Analysis Online","volume":null,"pages":null},"PeriodicalIF":0.2,"publicationDate":"2021-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42667355","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
M. Mikuriya, Sayuri Ono, Yoshiki Koyama, R. Mitsuhashi, M. Tsuboi
{"title":"Crystal Structure of a μ-Phenolato-μ-oxido-bridged Dinuclear Manganese(III) Complex with Dinucleating Schiff-base Ligand Having Three Phenolate Groups","authors":"M. Mikuriya, Sayuri Ono, Yoshiki Koyama, R. Mitsuhashi, M. Tsuboi","doi":"10.2116/XRAYSTRUCT.37.3","DOIUrl":"https://doi.org/10.2116/XRAYSTRUCT.37.3","url":null,"abstract":"A μ -phenolato- μ -oxido-bridged dinuclear manganese(III) complex with 2-(5-nitro-2-hydroxyphenyl)-1,3-bis(2-(5-nitro-2-hydroxybenzylideneamino)ethyl)imidazolidine (H 3 L NO2 ) was synthesized. The crystal structure was determined by the single-crystal X-ray diffraction method at 90 K. The complex crystallized as [(C 2 H 5 ) 3 NH][Mn 2 ( μ -L NO2 )( μ -O)Cl 2 ]·2THF in the orthorhombic space group Pnma with a = 15.052(3), b = 20.449(4), c = 14.700(3)Å, V = 4524.5(16)Å 3 , D calcd = 1.518 g/cm 3 , Z = 4. The R 1 [ I > 2 σ ( I )] and wR 2 (all data) values are 0.0713 and 0.1700, respectively, for all 5336 independent reflections. The two manganese(III) atoms are bridged by a phenolato-oxygen atom of L NO23– and a μ -oxido-oxygen atom, where each manganese(III) atom is further coordinated by phenolato-oxygen, imino- and imidazolidine-nitrogen atoms of L NO23– in a meridional fashion and a chlorido ligand to form a distorted octahedral geometry.","PeriodicalId":23922,"journal":{"name":"X-ray Structure Analysis Online","volume":null,"pages":null},"PeriodicalIF":0.2,"publicationDate":"2021-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48866486","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
U. Osman, Sharmili Silvarajoo, I. Bhat, M. Razali, Mohd Zul Helmi Rozaini, T. B. Ravoof
{"title":"Crystal Structure of (Z)-4-[4-Fluorophenyl]thiosemicarbazide4","authors":"U. Osman, Sharmili Silvarajoo, I. Bhat, M. Razali, Mohd Zul Helmi Rozaini, T. B. Ravoof","doi":"10.2116/xraystruct.36.49","DOIUrl":"https://doi.org/10.2116/xraystruct.36.49","url":null,"abstract":"The present compound, namely ( Z )-4-[4-fluorophenyl]thiosemicarbazide, crystallized in a monoclinic space group, P 2 1 / c , with cell parameters a = 12.1056(8)Å, b = 5.5177(4)Å, c = 12.5617(8)Å, β = 90.063(2) ° , V = 839.06(10)Å 3 , and Z = 4. The structure was solved and the data was refined to reach R and wR indices of 0.0946 and 0.1377, respectively. In the crystal, each molecule was linked to the next molecule by two N–H···S intermolecular hydrogen bonds.","PeriodicalId":23922,"journal":{"name":"X-ray Structure Analysis Online","volume":null,"pages":null},"PeriodicalIF":0.2,"publicationDate":"2020-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44213278","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Crystal Structure of rac-4-Iodo-5-methoxy[2.2]metacylophane; A Rare Example of a Halogenated Metacyclophane with Planar Chirality","authors":"Marco Blangetti, D. O’Shea","doi":"10.2116/xraystruct.36.45","DOIUrl":"https://doi.org/10.2116/xraystruct.36.45","url":null,"abstract":"A racemic mixture of planar chiral 4-iodo-5-methoxy[2.2]metacylophane ( 2 ) was synthesized by the low-temperature directed ortho aryl metalation of 5-methoxy[2.2]metacyclophane ( 1 ) and subsequent in situ reaction with iodine. The crystal structure was determined by the single-crystal X-ray diffraction method at 100 K. The compound crystallized in an orthorhombic system and was characterized as: Pca 2 1 , a = 13.5690(2), b = 14.2212(2), c = 7.5004(1)Å, Z = 4, V = 1447.33(4)Å 3 . The crystal structure was solved by direct methods and refined by full-matrix least-squares","PeriodicalId":23922,"journal":{"name":"X-ray Structure Analysis Online","volume":null,"pages":null},"PeriodicalIF":0.2,"publicationDate":"2020-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46173223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
N. Nakamura, Yoshimi Ichimaru, Koichi Kato, M. Sano, H. Kurosaki, K. Hayashi, S. Miyairi
{"title":"Crystal Structure of 5-Methoxyindirubin 3′-Oxime","authors":"N. Nakamura, Yoshimi Ichimaru, Koichi Kato, M. Sano, H. Kurosaki, K. Hayashi, S. Miyairi","doi":"10.2116/xraystruct.36.47","DOIUrl":"https://doi.org/10.2116/xraystruct.36.47","url":null,"abstract":"HyPix3000 diffractometer using graphite monochromated Cu- K α radiation K. crystal and experimental data Table The initial structure was solved by an intrinsic phasing method with SHELXT-2015. 8 All non-hydrogen atoms were refined using a full-matrix least-squares method on an F 2 utilizing SHELXL-2015. 9 All calculations were performed using Olex2 crystallographic software. 10 The residual electron density peaks, which may be from an EtOH molecule, were observed in the void area. The oxygen atoms in the EtOH molecules were disordered into four positions (O A–D ) with occupation factors of 0.333 (O A and O C ) The structure of 5-methoxyindirubin 3 ′ -oxime was determined by a single-crystal X-ray diffraction method at 93.15 K. The compound was crystallized in a monoclinic system, and was characterized as thus: P 2 1 / c , a = 16.0352(4)Å, b = 5.55140(10)Å, c = 17.2061(4)Å, β = 100.324(3) ° , Z = 4, and V = 1506.85(6)Å 3 . The crystal structure was solved by direct methods and refined by full-matrix least-squares on an F 2 to final values of R 1 = 0.0524 ( I > 2 σ ( I )) and wR 2 = 0.1411 (all data). 5-Methoxyindirubin","PeriodicalId":23922,"journal":{"name":"X-ray Structure Analysis Online","volume":null,"pages":null},"PeriodicalIF":0.2,"publicationDate":"2020-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43201938","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}