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Identification and full-length genome characterization of a novel mitovirus hosted by the truffle species Tuber rufum. 松露属植物块菌（Tuber rufum）携带的新型丝状病毒的鉴定和全长基因组特征描述。
VirusDisease Pub Date : 2024-09-01 Epub Date: 2024-09-02 DOI: 10.1007/s13337-024-00887-6
Ilgaz Akata, Gulce Edis, Eda Kumru, Ergin Sahin
{"title":"Identification and full-length genome characterization of a novel mitovirus hosted by the truffle species <i>Tuber rufum</i>.","authors":"Ilgaz Akata, Gulce Edis, Eda Kumru, Ergin Sahin","doi":"10.1007/s13337-024-00887-6","DOIUrl":"10.1007/s13337-024-00887-6","url":null,"abstract":"<p><p>Studying the diversity of viruses found in uncultivated fungi, including those forming mycorrhizal relationships, is essential. It's equally important to explore viral communities in fungi that cause plant diseases or are economically significant. This dual approach helps us grasp the full scope of mycovirus diversity and evolution. Mycorrhizal fungi, in particular, host a wide range of viruses, shedding light on viral diversity and evolution. In this study, we present the discovery and complete genome characterization of a novel mitovirus infecting the hypogeous mycorrhizal fungus <i>Tuber rufum</i>. This virus, denominated \"Tuber rufum mitovirus 1\" (TrMV1) has a genome size of 2864 nucleotides with a G + C content of 37.53%. It contains a single open reading frame (ORF) responsible for encoding RNA dependent RNA polymerase (RdRp). Comparative analysis using BLASTp reveals that the protein encoded by TrMV1 shares significant sequence similarities with those found in the <i>Triamitovirus</i> genus. Specifically, TrMV1 shows the closest resemblance (43.35% identity) to Sopawar virus, a mitovirus previously detected in soil environments through metatranscriptomic analyses. Phylogenetic examination categorizes TrMV1 as a member of the <i>Triamitovirus</i> genus within the <i>Mitoviridae</i> family. This finding marks the first identification of a mitovirus within the hypogeous mycorrhizal fungus <i>Tuber rufum</i>. The discovery of TrMV1 expands our knowledge of <i>Mitoviridae</i> family diversity and evolution, contributing to the growing repository of mycovirus sequences.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s13337-024-00887-6.</p>","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"35 3","pages":"531-536"},"PeriodicalIF":0.0,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11502633/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142509200","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular characterization, phylogenetic and variation analyses of SARS-CoV-2 strains in India 印度 SARS-CoV-2 株系的分子特征、系统发育和变异分析
VirusDisease Pub Date : 2024-08-09 DOI: 10.1007/s13337-024-00878-7
Meghna Banerjee, Dipjyoti Chakraborty, Arindom Chakraborty
{"title":"Molecular characterization, phylogenetic and variation analyses of SARS-CoV-2 strains in India","authors":"Meghna Banerjee, Dipjyoti Chakraborty, Arindom Chakraborty","doi":"10.1007/s13337-024-00878-7","DOIUrl":"https://doi.org/10.1007/s13337-024-00878-7","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"44 8","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141922618","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Machine learning-based gene expression biomarkers to distinguish Zika and Dengue virus infections: implications for diagnosis 基于机器学习的基因表达生物标记区分寨卡病毒和登革热病毒感染：对诊断的影响
VirusDisease Pub Date : 2024-08-08 DOI: 10.1007/s13337-024-00885-8
Ayesha Zeba, Aruna Rajalingam, Kanagaraj Sekar, Anjali Ganjiwale
{"title":"Machine learning-based gene expression biomarkers to distinguish Zika and Dengue virus infections: implications for diagnosis","authors":"Ayesha Zeba, Aruna Rajalingam, Kanagaraj Sekar, Anjali Ganjiwale","doi":"10.1007/s13337-024-00885-8","DOIUrl":"https://doi.org/10.1007/s13337-024-00885-8","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"31 12","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-08-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141928593","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Eradication and diversity of potato spindle tuber viroid in dahlia in Japan 日本大丽花中马铃薯纺锤形块茎病毒的根除和多样性
VirusDisease Pub Date : 2024-07-26 DOI: 10.1007/s13337-024-00888-5
Hironobu Yanagisawa, Shin-Ichi Fuji, Yusuke Shiki, Moritsugu Oishi, Hitoshi Oya, Keisuke Fukushima, Tomoki Ishikawa, Yuji Fujiwara, Takayuki Matsuura
{"title":"Eradication and diversity of potato spindle tuber viroid in dahlia in Japan","authors":"Hironobu Yanagisawa, Shin-Ichi Fuji, Yusuke Shiki, Moritsugu Oishi, Hitoshi Oya, Keisuke Fukushima, Tomoki Ishikawa, Yuji Fujiwara, Takayuki Matsuura","doi":"10.1007/s13337-024-00888-5","DOIUrl":"https://doi.org/10.1007/s13337-024-00888-5","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"53 27","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141799962","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A predictive approach for host-pathogen interactions using deep learning and protein sequences 利用深度学习和蛋白质序列预测宿主-病原体相互作用的方法
VirusDisease Pub Date : 2024-07-16 DOI: 10.1007/s13337-024-00882-x
Taha Shakibania, Masoud Arabfard, Ali Najafi
{"title":"A predictive approach for host-pathogen interactions using deep learning and protein sequences","authors":"Taha Shakibania, Masoud Arabfard, Ali Najafi","doi":"10.1007/s13337-024-00882-x","DOIUrl":"https://doi.org/10.1007/s13337-024-00882-x","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"4 20","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141642091","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
From a focal skin issue to a systemic disease: the multifaceted nature of cold sores, novel findings 从病灶性皮肤问题到全身性疾病：冷疮的多面性，新发现
VirusDisease Pub Date : 2024-07-09 DOI: 10.1007/s13337-024-00877-8
N. Akhoundi, Mahta Noorbakhsh, Alireza Siami, Zahra Naseri, Sara Hazara, Kobra Hazara
{"title":"From a focal skin issue to a systemic disease: the multifaceted nature of cold sores, novel findings","authors":"N. Akhoundi, Mahta Noorbakhsh, Alireza Siami, Zahra Naseri, Sara Hazara, Kobra Hazara","doi":"10.1007/s13337-024-00877-8","DOIUrl":"https://doi.org/10.1007/s13337-024-00877-8","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"25 31","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141836015","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome sequencing of SARS-Co-V-2 reveals mutations including F559I and V781D in S protein and LI123-124L in the nsp6 in 21K and 21L clades SARS-Co-V-2 基因组测序发现 21K 和 21L 支系的 S 蛋白中存在 F559I 和 V781D 突变，nsp6 中存在 LI123-124L 突变
VirusDisease Pub Date : 2024-07-08 DOI: 10.1007/s13337-024-00876-9
M. Seadawy, Mohamed I. Marei, Marwa Mohanad, Ahmed A. Hmed, Ahmed R. Sofy
{"title":"Genome sequencing of SARS-Co-V-2 reveals mutations including F559I and V781D in S protein and LI123-124L in the nsp6 in 21K and 21L clades","authors":"M. Seadawy, Mohamed I. Marei, Marwa Mohanad, Ahmed A. Hmed, Ahmed R. Sofy","doi":"10.1007/s13337-024-00876-9","DOIUrl":"https://doi.org/10.1007/s13337-024-00876-9","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":" 7","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141670236","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Nucleoside and non-nucleoside reverse transcriptase inhibitor drugs (NRTIs and NNRTIs) are capable of binding Chandipura virus polymerase protein (L) and inhibit virus replication 核苷类和非核苷类逆转录酶抑制剂药物（NRTI 和 NNRTI）能够结合钱迪普拉病毒聚合酶蛋白（L），抑制病毒复制
VirusDisease Pub Date : 2024-07-08 DOI: 10.1007/s13337-024-00883-w
D. Mandal, Deeksha Pandey, D. P. Sarkar, Manish Kumar
{"title":"Nucleoside and non-nucleoside reverse transcriptase inhibitor drugs (NRTIs and NNRTIs) are capable of binding Chandipura virus polymerase protein (L) and inhibit virus replication","authors":"D. Mandal, Deeksha Pandey, D. P. Sarkar, Manish Kumar","doi":"10.1007/s13337-024-00883-w","DOIUrl":"https://doi.org/10.1007/s13337-024-00883-w","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":" 1190","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141668920","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sewage surveillance of SARS-CoV-2 in Tokyo (May 2020–June 2022): method using high-throughput, fully-automated platform 东京 SARS-CoV-2 的污水监测（2020 年 5 月至 2022 年 6 月）：使用高通量全自动平台的方法
VirusDisease Pub Date : 2024-07-02 DOI: 10.1007/s13337-024-00880-z
Ryota Kumagai, M. Kawakami, Fumi Kasuya, Kinji Yamada, Akihiro Takahashi, Kouki Murayama, Kenshi Morita, Tomoya Kaneyasu, Naoko Tamai, Michiya Hasegawa, Sachiko Harada, A. Amano, Takushi Fujiwara, Hirofumi Miyake, M. Nagashima, K. Sadamasu
{"title":"Sewage surveillance of SARS-CoV-2 in Tokyo (May 2020–June 2022): method using high-throughput, fully-automated platform","authors":"Ryota Kumagai, M. Kawakami, Fumi Kasuya, Kinji Yamada, Akihiro Takahashi, Kouki Murayama, Kenshi Morita, Tomoya Kaneyasu, Naoko Tamai, Michiya Hasegawa, Sachiko Harada, A. Amano, Takushi Fujiwara, Hirofumi Miyake, M. Nagashima, K. Sadamasu","doi":"10.1007/s13337-024-00880-z","DOIUrl":"https://doi.org/10.1007/s13337-024-00880-z","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"26 32","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141684402","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Repurposing FDA approved drugs against monkeypox virus DNA dependent RNA polymerase: virtual screening, normal mode analysis and molecular dynamics simulation studies 针对猴痘病毒 DNA 依赖性 RNA 聚合酶的 FDA 批准药物的再利用：虚拟筛选、正常模式分析和分子动力学模拟研究
VirusDisease Pub Date : 2024-06-11 DOI: 10.1007/s13337-024-00869-8
Ahmad Abdul Salam Khan, Muhammad Abrar Yousaf, Jahanzaib Azhar, Muhammad Faisal Maqbool, Ruqia Bibi
{"title":"Repurposing FDA approved drugs against monkeypox virus DNA dependent RNA polymerase: virtual screening, normal mode analysis and molecular dynamics simulation studies","authors":"Ahmad Abdul Salam Khan, Muhammad Abrar Yousaf, Jahanzaib Azhar, Muhammad Faisal Maqbool, Ruqia Bibi","doi":"10.1007/s13337-024-00869-8","DOIUrl":"https://doi.org/10.1007/s13337-024-00869-8","url":null,"abstract":"","PeriodicalId":23708,"journal":{"name":"VirusDisease","volume":"6 7","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141360748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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