Systems Biology in Reproductive Medicine最新文献

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Oxytocin modulates steroidogenesis-associated genes and estradiol levels in the placenta. 催产素调节胎盘中甾体生成相关基因和雌二醇水平。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2023-06-01 DOI: 10.1080/19396368.2023.2170296
Sung-Min An, Min Jae Kim, Jea Sic Jeong, So Young Kim, Da Som Kim, Beum-Soo An, Seung Chul Kim
{"title":"Oxytocin modulates steroidogenesis-associated genes and estradiol levels in the placenta.","authors":"Sung-Min An,&nbsp;Min Jae Kim,&nbsp;Jea Sic Jeong,&nbsp;So Young Kim,&nbsp;Da Som Kim,&nbsp;Beum-Soo An,&nbsp;Seung Chul Kim","doi":"10.1080/19396368.2023.2170296","DOIUrl":"https://doi.org/10.1080/19396368.2023.2170296","url":null,"abstract":"<p><p>Oxytocin (OXT) plays a significant role during pregnancy, especially toward the end of pregnancy. Some studies have reported that OXT is involved in the stimulation of steroidogenesis in several organs. However, the effects of OXT on placental steroidogenesis have not yet been established. In this study, we investigated the regulation of steroid hormones and steroidogenic enzymes by OXT-associated signaling <i>in vitro</i> and <i>in vivo</i>. OXT increased the gene expression of steroidogenic enzymes, which convert pregnenolone to progesterone and dehydroepiandrosterone (DHEA) <i>in vitro</i>. In OXT-administered pregnant rats, pregnenolone and DHEA levels were significantly enhanced in the plasma and the expression of the enzymes synthesizing DHEA, testosterone, and estradiol (E2) was increased in placental tissues. Furthermore, OXT was found to affect placental cell differentiation, which is closely related to steroid hormone synthesis. After treatment of the pregnant rats with atosiban, an antagonist of the OXT receptor, the concentration of E2 in the plasma and the expression of E2-synthesizing enzyme were reduced. This regulation may be due to OXT-mediated differentiation, because OXT increases the expression of corticotropin-releasing hormone, which is a biomarker of placental cell differentiation. Our findings suggest that OXT contributes to maintaining pregnancy by regulating the differentiation of placental cells and steroidogenesis during pregnancy.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9457222","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Chronic stress decreases fertility parameters in female rats. 慢性应激降低雌性大鼠的生育参数。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2023-06-01 DOI: 10.1080/19396368.2023.2171822
Fahiel Casillas, Alejandra Flores-González, Lizbeth Juárez-Rojas, Alma López, Miguel Betancourt, Eduardo Casas, Iván Bahena, Edmundo Bonilla, Socorro Retana-Márquez
{"title":"Chronic stress decreases fertility parameters in female rats.","authors":"Fahiel Casillas,&nbsp;Alejandra Flores-González,&nbsp;Lizbeth Juárez-Rojas,&nbsp;Alma López,&nbsp;Miguel Betancourt,&nbsp;Eduardo Casas,&nbsp;Iván Bahena,&nbsp;Edmundo Bonilla,&nbsp;Socorro Retana-Márquez","doi":"10.1080/19396368.2023.2171822","DOIUrl":"https://doi.org/10.1080/19396368.2023.2171822","url":null,"abstract":"<p><p>Multiple effects of stress on health have been reported; however, reproductive alterations in oocytes and cumulus cells have not been fully described. In females, chronic stress has been shown to produce alterations in the estrous cycle, to decrease oocyte <i>in vivo</i> maturation, and to increase the percentage of abnormal oocytes. The aim of this study was to evaluate whether the oocytes from chronically stressed female rats could recover and mature <i>in vitro</i> by providing them with all the necessary culture conditions, as well as to evaluate the functionality of the GAP junctions, and the viability and DNA integrity of the cumulus cells, which are crucial for the complete maturation and development of the oocyte. For this, rats were stressed daily by cold water immersion (15 °C) during 15 min for 30 consecutive days. Corticosterone serum levels in rats increased as an indicator of stress. Chronic stress decreased the percentage of <i>in vitro</i> matured oocytes because the cumulus cells presented irreparable damage to their DNA that led to their death, being unable to establish bidirectional communication with the oocyte for its meiotic resumption through the GAP junctions, which were also damaged. These findings could partially explain an association between stress and infertility.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9510342","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The effect of ionomycin-induced oocyte activation on multiple morphological abnormalities of the sperm flagella. 离子霉素诱导的卵母细胞活化对精子鞭毛多种形态异常的影响。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2023-06-01 DOI: 10.1080/19396368.2023.2167621
Zhiren Liu, Yujia Guo, Xingting Chen, Chen Lin, Xinxin Guo, Mingting Jiang, Qicai Liu
{"title":"The effect of ionomycin-induced oocyte activation on multiple morphological abnormalities of the sperm flagella.","authors":"Zhiren Liu,&nbsp;Yujia Guo,&nbsp;Xingting Chen,&nbsp;Chen Lin,&nbsp;Xinxin Guo,&nbsp;Mingting Jiang,&nbsp;Qicai Liu","doi":"10.1080/19396368.2023.2167621","DOIUrl":"https://doi.org/10.1080/19396368.2023.2167621","url":null,"abstract":"<p><p>Artificial oocyte activation (AOA) is considered an effective method to improve clinical outcomes in patients with some forms of male factor infertility and does not increase the risk of birth defects. However, the effects of AOA on patients with multiple morphological abnormalities of the sperm flagella (MMAF) caused by a <i>DNAH1</i> mutation are still unknown. To explore the effects, our study analyzed a case with MMAF due to <i>DNAH1</i> homozygous mutation that underwent testicular sperm extraction (TESE) combined with intracytoplasmic sperm injection (ICSI). The case had 28 MII oocytes. The 28 oocytes were divided randomly and equally into AOA and non-AOA groups. Ionomycin was used for AOA. We compared the clinical outcomes of two groups and selected three blastulation failure embryos from each group for transcriptome analysis (Data can be accessed through GSE216618). Differentially expressed genes (DEGs) were determined with an adjusted <i>p</i>-value <0.05 and a |log2-fold change| ≥1. The comparison of clinical outcomes showed that the two pronuclei (2PN) rate and grade 1-2 embryo rate at day 3 were not significantly different between the two groups. Transcriptome analyses of blastulation failed embryos showed that the use of AOA had potential risks of chromosome structure defects, transcriptional regulation defects, and epigenetic defects. In conclusion, when the case with MMAF due to <i>DNAH1</i> mutation underwent TESE-ICSI, ionomycin-induced oocyte activation could not improve the clinical outcomes and introduced the risks of chromosome structure defect, transcriptional regulation defect, and epigenetic defect.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9477176","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Resveratrol improves follicular development of PCOS rats via regulating glycolysis pathway and targeting SIRT1. 白藜芦醇通过调节糖酵解途径和靶向SIRT1促进PCOS大鼠卵泡发育。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2023-04-01 DOI: 10.1080/19396368.2022.2125855
Peng Huo, Man Li, Jianghua Le, Chunjiang Zhu, Jun Yao, Shun Zhang
{"title":"Resveratrol improves follicular development of PCOS rats via regulating glycolysis pathway and targeting SIRT1.","authors":"Peng Huo,&nbsp;Man Li,&nbsp;Jianghua Le,&nbsp;Chunjiang Zhu,&nbsp;Jun Yao,&nbsp;Shun Zhang","doi":"10.1080/19396368.2022.2125855","DOIUrl":"https://doi.org/10.1080/19396368.2022.2125855","url":null,"abstract":"<p><p>Polycystic ovary syndrome (PCOS) is a disease characterized by metabolic disorders. This study aimed to examine the effects of resveratrol treatment on ovulation in the PCOS rat model. Quantitative real-time PCR and immunohistochemistry were used to determine the mRNA and protein expression levels. TNUEL assay was used to evaluate cell apoptosis in ovary. The metabolites were evaluated by liquid chromatography with tandem mass spectrometry. Resveratrol alleviated disrupted estrous cycle and improved granular cell layers, and reversed the decreased proliferation and increased cell apoptosis of granulosa cells in the ovarian tissues of PCOS rats. Resveratrol restored the changes in the mRNA expression levels in the rate-limiting genes of glycolysis in the PCOS ovary. The expression of lactate dehydrogenase A (LDH-A), pyruvate kinase isozyme M2 (PKM2), and sirtuin 1 (SIRT1) was significantly downregulated in ovarian tissues of the PCOS rats; while the resveratrol treatment significantly increased the expression of LDH-A, PKM2, and SIRT1 in the ovarian tissues of PCOS rats. Collectively, the protective effects of resveratrol in the PCOS rats may be associated with the regulation of glycolysis-related mediators including PKM2, LDH-A, and SIRT1. Resveratrol may represent a good candidate in alleviating the development of PCOS.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9308270","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Long non-coding RNA DNMBP-AS1 promotes prostate cancer development by regulating LCLAT1. 长非编码RNA DNMBP-AS1通过调节LCLAT1促进前列腺癌症的发展。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2023-04-01 Epub Date: 2023-01-05 DOI: 10.1080/19396368.2022.2129520
Xiangang Yin, Suying Wang, Rong Ge, Jinping Chen, Youliang Gao, Shanshan Xu, Ting Yang
{"title":"Long non-coding RNA DNMBP-AS1 promotes prostate cancer development by regulating LCLAT1.","authors":"Xiangang Yin,&nbsp;Suying Wang,&nbsp;Rong Ge,&nbsp;Jinping Chen,&nbsp;Youliang Gao,&nbsp;Shanshan Xu,&nbsp;Ting Yang","doi":"10.1080/19396368.2022.2129520","DOIUrl":"10.1080/19396368.2022.2129520","url":null,"abstract":"<p><p>Prostate cancer (PCa) is as a serious threat to male's health around the world. Recent studies have indicated that long non-coding RNAs (lncRNAs) occupy an important position in various human cancers. However, the function and mechanism of lncRNA DNMBP antisense RNA 1 (DNMBP-AS1) in PCa is rarely investigated. RT-qPCR analysis was used to test gene expression. CCK-8, colony formation, EdU staining and transwell assays were conducted to assess the function of DNMBP-AS1 on PCa cell behaviors. RNA pull down, RIP and luciferase reporter assays were implemented to verify the mechanism of DNMBP-AS1. DNMBP-AS1 was obviously up-regulated in PCa cell lines. Functionally, DNMBP-AS1 knockdown weakened cell proliferation, migration and invasion of PCa. Mechanistically, DNMBP-AS1 sponged microRNA-6766-3p (miR-6766-3p) to regulate lysocardiolipin acyltransferase 1 (LCLAT1) expression. Furthermore, DNMBP-AS1 could stabilize LCLAT1 expression by recruiting ELAV like RNA binding protein 1 (ELAVL1). Consequently, rescue assays demonstrated that DNMBP-AS1 regulated PCa cell proliferation, migration and invasion through enhancing LCLAT1 expression. Collectively, we elucidated the function and regulatory mechanism of DNMBP-AS1 and provided the first evidence of DNMBP-AS1 as a driver for PCa.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9249960","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Retinoic acid (all-trans) presents antioxidant properties within human ovary and reduces progesterone production by human granulosa cells. 维甲酸(全反式)在人卵巢内呈现抗氧化特性,并减少人颗粒细胞的黄体酮产生。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2023-04-01 DOI: 10.1080/19396368.2022.2120439
Bruno M Fonseca, Rebeca Cruz, Beatriz Pinto, Lia Costa, Eduarda Felgueira, Pedro Oliveira, Susana Casal, Irene Rebelo
{"title":"Retinoic acid (<i>all-trans</i>) presents antioxidant properties within human ovary and reduces progesterone production by human granulosa cells.","authors":"Bruno M Fonseca,&nbsp;Rebeca Cruz,&nbsp;Beatriz Pinto,&nbsp;Lia Costa,&nbsp;Eduarda Felgueira,&nbsp;Pedro Oliveira,&nbsp;Susana Casal,&nbsp;Irene Rebelo","doi":"10.1080/19396368.2022.2120439","DOIUrl":"https://doi.org/10.1080/19396368.2022.2120439","url":null,"abstract":"<p><p>Both vitamin A and E support female reproduction and embryonic development. These vitamins have been associated with decreased fertility or failure to end the pregnancy in animals. An observational study was conducted on follicular fluid (FF) samples to determine the concentrations of fat-soluble vitamins of women undergoing <i>in vitro</i> fertilization and its correlation with assisted reproductive technology characteristics and pregnancy outcomes. Moreover, the effects of all-<i>trans</i>-retinoic acid (atRA) and alpha-tocopherol on granulosa cell viability, apoptosis, autophagy and hormonal production were evaluated. No association was identified between fat-soluble vitamin concentrations in FF and infertility aetiology, body mass index or woman's age. There were differences in follicular antioxidant profiles and ovarian response stimulation<i>. In vitro</i> evaluation of atRA and alpha-tocopherol reveals that, at physiological concentrations, both compounds may affect the viability of granulosa cells. In addition, these compounds are able to protect granulosa cells from oxidative stress, as well as to affect estradiol and progesterone production. Our data suggest that atRA and alpha-tocopherol levels should be well controlled as they may have implications in the function and viability of granulosa cells and highlights retinol as a marker of the oxidative defenses within ovary environment.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9249473","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Optimization of human semen analysis using CASA-Mot technology. CASA-Mot技术优化人精液分析。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2023-04-01 DOI: 10.1080/19396368.2023.2170297
Almudena García-Molina, Nuria Navarro, Anthony Valverde, Sara Sadeghi, Nicolás Garrido, Carles Soler
{"title":"Optimization of human semen analysis using CASA-Mot technology.","authors":"Almudena García-Molina,&nbsp;Nuria Navarro,&nbsp;Anthony Valverde,&nbsp;Sara Sadeghi,&nbsp;Nicolás Garrido,&nbsp;Carles Soler","doi":"10.1080/19396368.2023.2170297","DOIUrl":"https://doi.org/10.1080/19396368.2023.2170297","url":null,"abstract":"<p><p>The purpose of this study is to investigate the optimal framerate (FR) and the use of different counting chambers for improving CASA-Mot technology use in Andrology. Images were captured at 500 fps, then segmented and analyzed in several ranges of FRs (from 25 to 250) to define the asymptotic point that as an optimal FR. This work was replicated using counting chambers based in capillarity (disposable) or drop displacement (reusable) to study their effects on the motility results and kinematic values of the samples under the different experimental conditions. The α value (asymptote corresponding to FR<sub>o</sub>) of the exponential curve was 150.23 fps, corresponding to a VCL of 130.58 mm/s, far from the value of 98.89 mm/s corresponding to 50 fps (the highest FR used by most current CASA-Mot systems). Our results have shown that, when using reusable counting chambers, type and depth have influence. In addition, different results were obtained depending on the area of image captured inside the different counting chamber types. To have reliable results in human sperm kinematic studies, almost 150 fps should be used for capturing and analyzing and differences between chambers should be considered by sampling from different areas, to obtain a representative value of the whole sample.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9250379","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Superior mesenteric ganglion via ovarian plexus nerve involved in the cross-talk between noradrenaline and GnRH in rat ovaries. 经卵巢丛神经的肠系膜上神经节参与大鼠卵巢去甲肾上腺素与GnRH的交互作用。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2023-04-01 DOI: 10.1080/19396368.2022.2153096
María Belén Delsouc, Sandra Vallcaneras, Cristina Daneri Becerra, Fabián Heber Mohamed, Marina Fernández, Adriana Soledad Vega Orozco, Marilina Casais
{"title":"Superior mesenteric ganglion via ovarian plexus nerve involved in the cross-talk between noradrenaline and GnRH in rat ovaries.","authors":"María Belén Delsouc,&nbsp;Sandra Vallcaneras,&nbsp;Cristina Daneri Becerra,&nbsp;Fabián Heber Mohamed,&nbsp;Marina Fernández,&nbsp;Adriana Soledad Vega Orozco,&nbsp;Marilina Casais","doi":"10.1080/19396368.2022.2153096","DOIUrl":"https://doi.org/10.1080/19396368.2022.2153096","url":null,"abstract":"<p><p>There is evidence of the existence of an intraovarian gonadotropin-releasing hormone (GnRH) system. There are also reports about the influence of extrinsic ovarian innervation in gonadal function. Therefore, it is interesting to study the relationship between ovarian sympathetic innervation and GnRH to shed light on possible physiological and pathophysiological implications. This work aimed to investigate whether noradrenergic stimulation of the superior mesenteric ganglion (SMG) can modify the levels of ovarian GnRH and cause functional and morphological changes in the gonad through the ovarian plexus nerve (OPN), during estrus and diestrus II in rats. The SMG-OPN-Ovary system and an ovary without extrinsic innervation were removed from Holtzman rats in estrus and diestrus II stages and placed in specially designed cuvettes containing Krebs-Ringer buffer. In the experimental groups, SMGs and denervated ovaries were stimulated with 10<sup>-6</sup> M noradrenaline (NA). GnRH and progesterone levels (in the ovarian incubation medium) and the mRNA expression of 3beta-hydroxysteroid dehydrogenase (<i>Hsd3b3</i>), 20alpha-hydroxysteroid dehydrogenase (<i>Akr1c18</i>), <i>Bax</i>, and <i>Bcl2</i> were analyzed. Histological studies of the ovaries were performed. In estrus, NA decreased GnRH levels in both experimental schemes. Furthermore, progesterone levels increased while the <i>Akr1c18</i> expression and <i>Bax/Bcl2</i> ratio decreased, without causing changes in ovarian morphology. In diestrus, the noradrenergic stimulation of the ganglion increased GnRH levels, decreased progesterone levels, and increased <i>Akr1c18</i> expression and <i>Bax/Bcl2</i> ratio. Follicles with histoarchitecture alterations and corpus luteum with signs of cell death were observed. In denervated ovaries, NA increased the levels of GnRH and progesterone. Furthermore, NA decreased the <i>Bax/Bcl2</i> ratio and histological studies revealed signs compatible with a possible atretogenic effect. In conclusion, noradrenergic stimulation of the SMG-OPN pathway regulates ovarian cyclicity. The SMG modulates the cross-talk between NA and ovarian GnRH, protecting the ovary from atretogenic effects and luteal apoptosis during estrus while inducing luteal regression in the diestrus II.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9605350","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Forecasting most deleterious nsSNPs in human TLR9 gene and their cumulative impact on biophysical features of the protein using in silico approaches. 利用计算机方法预测人类TLR9基因中最有害的非单核苷酸多态性及其对蛋白质生物物理特性的累积影响
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2023-04-01 DOI: 10.1080/19396368.2022.2148837
Heena Gautam, Ved Vrat Verma, Syed Akhtar Husain, Mausumi Bharadwaj
{"title":"Forecasting most deleterious nsSNPs in human <i>TLR9</i> gene and their cumulative impact on biophysical features of the protein using <i>in silico</i> approaches.","authors":"Heena Gautam,&nbsp;Ved Vrat Verma,&nbsp;Syed Akhtar Husain,&nbsp;Mausumi Bharadwaj","doi":"10.1080/19396368.2022.2148837","DOIUrl":"https://doi.org/10.1080/19396368.2022.2148837","url":null,"abstract":"<p><p>In women, the uterine cervix and corpus uteri are two main suspects, playing a major role in cancer-associated-mortality. Immunologically, Toll-like receptors (TLRs) associated with the innate immune system, can recognize pathogens and induce immune responses against pathogens. Cellularly, TLR9 expression occurs in immune system cells including macrophages, natural killer cells, dendritic cells, and other antigen-presenting cells. TLR9 recognizes and interacts with viral and bacterial DNA comprising cytosine-phosphate-guanine (CpG) dideoxynucleotide motif. The current study is designed to identify the most deleterious nonsynonymous single nucleotide polymorphisms (nsSNPs) in the <i>TLR9</i> gene and to delineate their deleterious effect on the structural and functional features of proteins at the molecular level. Based on the implementation of various computational tools and algorithms eight most deleterious nsSNPs (P139H, R257C, C265Y, L283P, G514D, L544Q, H566Y, and W670R) have been identified in the human <i>TLR9</i> gene as potentially damaging SNPs. Further, our study suggests highly conserved patterns at deleterious nsSNPs sites could influence protein stability and its functional features. Additionally, this study identifies two nsSNPs (G514D and W670R) associated with the severity of Uterine corpus endometrial carcinoma. In support of our computational findings, the validation of key results using polymerase chain reaction and other experimental methods is warranted in the Indian population. In general, this study might be able to delineate the guideline for identifying the most damaging SNPs and enhances the understating of the risk factors for cancer and disease susceptibilities.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9308768","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mitochondrial DNA copy number in cumulus granulosa cells as a predictor for embryo morphokinetics and chromosome status. 粒丘细胞线粒体DNA拷贝数作为胚胎形态动力学和染色体状态的预测因子。
IF 2.4 4区 医学
Systems Biology in Reproductive Medicine Pub Date : 2023-04-01 DOI: 10.1080/19396368.2022.2145248
Pitra Rahmawati, Budi Wiweko, Arief Boediono
{"title":"Mitochondrial DNA copy number in cumulus granulosa cells as a predictor for embryo morphokinetics and chromosome status.","authors":"Pitra Rahmawati,&nbsp;Budi Wiweko,&nbsp;Arief Boediono","doi":"10.1080/19396368.2022.2145248","DOIUrl":"https://doi.org/10.1080/19396368.2022.2145248","url":null,"abstract":"<p><p>While morphokinetic evaluation of embryos has become the most commonly used technique in IVF to select embryos for transfer, studies have demonstrated that mitochondrial DNA (mtDNA) copy number is correlated with embryo viability and transfer outcomes. Correspondingly, this cohort study aims to evaluate the association between the mtDNA copy number in cumulus granulosa cells (CGCs) with embryo morphokinetic parameters and chromosomal status. Real-time PCR was employed to measure the mtDNA copy number of the 129 CGCs in samples obtained from 30 patients undergoing the IVF-IMSI program at Morula IVF Jakarta between July and October 2020. Bivariate and multiple analyses were utilized to determine its relationship with embryo morphokinetics, blastocyst yield, and chromosomal status. According to the analysis, there was a significant correlation between the mtDNA copy number and the blastocyst status after adjusting for the maternal age and sperm morphology (coefficient 0.832, <i>p</i> value = 0.032, RR value 2.299). Moreover, a significant link was observed between mtDNA copy number in CGC and early embryo developmental phase M1 (t2-t8), using the equation of M1 is 5.702-0.271 mtDNA copy number of CGCs + 0.017 maternal age + 0.013 sperm motility -0.115 sperm morphology (<i>p</i> value = 0.032). However, no correlation was found between the mtDNA copy number in CGCs with the other morphokinetic parameters (M2: tC-tEB, M3: t2-tEB, DC, RC, MN with <i>p</i> > 0.05), or the chromosomal status of the embryos (euploid: 139.44 ± 133.12, aneuploid: 142.40 ± 111.30, <i>p</i> = 0.806). In conclusion, our study suggests that mtDNA copy number in CGCs can serve as a useful biomarker for blastocyst status and early embryo developmental phase but not for chromosomal status.</p>","PeriodicalId":22184,"journal":{"name":"Systems Biology in Reproductive Medicine","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9304177","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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