Sheng wu gong cheng xue bao = Chinese journal of biotechnology最新文献

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[Methodological breakthroughs and challenges in research of soil phage microecology]. [土壤噬菌体微生态学研究的方法论突破与挑战]。
Sheng wu gong cheng xue bao = Chinese journal of biotechnology Pub Date : 2025-06-25 DOI: 10.13345/j.cjb.250258
Xiaofang Wang, Shuo Wang, Keming Yang, Yike Tang, Yangchun Xu, Qirong Shen, Zhong Wei
{"title":"[Methodological breakthroughs and challenges in research of soil phage microecology].","authors":"Xiaofang Wang, Shuo Wang, Keming Yang, Yike Tang, Yangchun Xu, Qirong Shen, Zhong Wei","doi":"10.13345/j.cjb.250258","DOIUrl":"https://doi.org/10.13345/j.cjb.250258","url":null,"abstract":"<p><p>Phages, as obligate bacterial and archaeal parasites, constitute a virus group of paramount ecological significance due to their exceptional abundance and genetic diversity. These biological entities serve as critical regulators in Earth's ecosystems, driving biogeochemical cycles, energy fluxes, and ecosystem services across terrestrial and marine environments. Within soil microbiomes, phages function as microbial \"dark matter,\" maintaining the soil-plant system balance through precise modulation of the microbial community structure and functional dynamics. Despite the growing research interests in soil phages in recent years, the proportion of such studies in environmental virology remains disproportionately low, which is primarily attributed to researchers' limited familiarity with the research methodologies for phage microecology, incomplete technical frameworks, and inherent challenges posed by soil environmental complexity. To address these challenges, this review synthesizes cutting-edge methodologies for soil phage investigation from four aspects: (1) tangential flow filtration (TFF)-based phage enrichment strategies; (2) integrated quantification approaches combining double-layer agar plating, epifluorescence microscopy, and flow cytometry; (3) multi-omics analytical pipelines leveraging metagenomics and viromics datasets; and (4) computational frameworks merging machine learning algorithms with eco-evolutionary theory for deciphering phage-host interaction networks. Through comparative analysis of methodological principles, technical merits, and application scopes, we establish a comprehensive workflow for soil phage research. Future research in this field should prioritize: (1) construction of soil phage resource libraries, (2) exploration of RNA phages based on transcriptomes, (3) functional characterization of unknown genes, and (4) deep integration and interaction validation of multi-omics data. This systematic methodological synthesis provides critical technical references for addressing fundamental challenges in characterizing soil phages regarding the community structure, functional potential, and interaction mechanisms with hosts.</p>","PeriodicalId":21778,"journal":{"name":"Sheng wu gong cheng xue bao = Chinese journal of biotechnology","volume":"41 6","pages":"2310-2323"},"PeriodicalIF":0.0,"publicationDate":"2025-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144476655","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Development of a dietary factor evaluation method based on the gut microbiota health index]. [基于肠道菌群健康指数的膳食因子评价方法的建立]。
Sheng wu gong cheng xue bao = Chinese journal of biotechnology Pub Date : 2025-06-25 DOI: 10.13345/j.cjb.250206
Zixin Yang, Heqiang Xie, Jinlin Zhu, Hongchao Wang, Wenwei Lu
{"title":"[Development of a dietary factor evaluation method based on the gut microbiota health index].","authors":"Zixin Yang, Heqiang Xie, Jinlin Zhu, Hongchao Wang, Wenwei Lu","doi":"10.13345/j.cjb.250206","DOIUrl":"https://doi.org/10.13345/j.cjb.250206","url":null,"abstract":"<p><p>The gut microbiota is closely related to human health, and various gut microbiota health indices have been developed to assist in evaluating the health of the gut microbiota and even the overall health of the human body. Diets are one of the main factors that regulate the gut microbiota, while there is still no good method for evaluating the regulatory effects of dietary factors. To assess the regulatory effects of dietary factors on the gut microbiota of overweight individuals, we conducted an <i>in vitro</i> fermentation experiment based on 17 dietary factors, and developed an evaluation method for the regulatory effects of dietary factors based on the health index with principal component analysis (hiPCA). The results showed that most dietary factors had positive regulatory effects on the gut microbiota of overweight individuals. Galactooligosaccharides (GOS) and puerarin were the most significant dietary factors in regulating the gut microbiota of overweight individuals. The analysis of the contribution of species to the hiPCA indicated that GOS and puerarin might inhibit the activities of bacteria associated with overweight by regulating <i>Eubacterium dolichum</i>, <i>Lactobacillus salivarius</i>, <i>Clostridium clostridioforme</i>, <i>Clostridium citroniae</i>, and Lachnospiraceae bacterium 9_1_43BFAA. In addition, GOS may further enhance the inhibition of these activities by regulating Lachnospiraceae bacterium 6_1_63FAA, thereby reducing the gut health risks in overweight individuals. In summary, this study evaluated the health effects of dietary factors based on the hiPCA and specifically analyzed the role of different dietary factors in regulating the gut microbiota of overweight individuals. This provides new ideas and methods for improving gut microbiota health and has potential applications in the field of precision nutrition.</p>","PeriodicalId":21778,"journal":{"name":"Sheng wu gong cheng xue bao = Chinese journal of biotechnology","volume":"41 6","pages":"2373-2387"},"PeriodicalIF":0.0,"publicationDate":"2025-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144476670","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Soil conditioners affect rhizospheric bacterial communities of Cabernet Sauvignon]. [土壤调节剂对赤霞珠根际细菌群落的影响]。
Sheng wu gong cheng xue bao = Chinese journal of biotechnology Pub Date : 2025-06-25 DOI: 10.13345/j.cjb.240464
Shuaicheng An, Jiangtao Bi, Gong Li, Ruifan Mao, Peng Liu, Zhibing Hui, Xiaoqin Su
{"title":"[Soil conditioners affect rhizospheric bacterial communities of Cabernet Sauvignon].","authors":"Shuaicheng An, Jiangtao Bi, Gong Li, Ruifan Mao, Peng Liu, Zhibing Hui, Xiaoqin Su","doi":"10.13345/j.cjb.240464","DOIUrl":"https://doi.org/10.13345/j.cjb.240464","url":null,"abstract":"<p><p>Three soil conditioners were prepared from granulated food waste and decomposed cattle manure combined with desulfurization gypsum, coal gangue, and maifanite, respectively. Field trials were conducted in the saline field growing Cabernet Sauvignon. The effects of soil conditioners on rhizospheric bacterial communities were studied, with the aim of providing a scientific basis for soil amelioration and restoration. Five treatments were designed, including the control (T1), conventional fertilization (T2), reduced chemical fertilization+organic matter-based soil conditioner with calcium additives (T3), reduced chemical fertilization+organic matter-based soil conditioner with silica additives (T4), and reduced chemical fertilization+organic matter-based soil conditioner with magnesium additives (T5), each with three replications. The results indicated that soil conditioners improved the rhizospheric nutrients, yield, and quality of grape (<i>P</i><0.05), increased relative abundance of Proteobacteria by 17.32%-23.37%, decreased relative abundance of unidentified_Bacteria and Acidobacteriota by 4.22%-28.42% and 20.88%-35.81%, respectively. The bacterial community composition and diversity were different between treatments. Function analysis showed that the expression levels of the genes involved in chromosome and protein synthesis, mRNA biosynthesis, and glyoxylate and dicarboxylate metabolism were up-regulated in the treatments with soil conditioners. The correlation analysis revealed that multiple environmental factors affected the alpha diversity of rhizospheric bacterial communities, and some bacterial taxa were closely related to the grape yield and quality. It is concluded that soil conditioners can effectively alter rhizosphere nutrient levels and bacterial community structures and functions. T5 treatment outperforms other treatments in improving the physico-chemical and biological characteristics of rhizosphere, and the yield, and quality of grape. It has potential for application, and provides an important basis for development of new-type soil conditioners.</p>","PeriodicalId":21778,"journal":{"name":"Sheng wu gong cheng xue bao = Chinese journal of biotechnology","volume":"41 6","pages":"2432-2450"},"PeriodicalIF":0.0,"publicationDate":"2025-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144476672","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Advances in the regulation of gut microbiota metabolites by traditional Chinese medicine in the treatment of diseases]. [中医药治疗疾病调节肠道菌群代谢物的研究进展]。
Sheng wu gong cheng xue bao = Chinese journal of biotechnology Pub Date : 2025-06-25 DOI: 10.13345/j.cjb.240996
Deyi Yang, Jinghan Lin, Tao Wang, Hongwei Liu
{"title":"[Advances in the regulation of gut microbiota metabolites by traditional Chinese medicine in the treatment of diseases].","authors":"Deyi Yang, Jinghan Lin, Tao Wang, Hongwei Liu","doi":"10.13345/j.cjb.240996","DOIUrl":"10.13345/j.cjb.240996","url":null,"abstract":"<p><p>Traditional Chinese medicine (TCM) plays an important role in preventing and treating diseases and improving human health. However, the complex bioactive components and regulation of signaling pathway and network restrict the elucidation of the mechanisms of action of TCM. A human being is regarded as a super \"symbiont\" composed of body cells and commensal microorganisms. Gut microbiota is the core commensal microorganism system of a human body, being considered as \"the second genome\" and the new \"organ\". Alterations in gut microbiota reflect the state of body health and progression of diseases. Recent investigations have revealed that the TCM rich in polysaccharides and polyphenols can modulate gut microbiota metabolites to rehabilitate gut homeostasis, thus ameliorating diseases <i>via</i> regulating gut-liver axis or gut-brain axis. This review summarizes the causal relationship and mechanisms of action of TCM in the treatment of diseases from the perspective of gut microbiota metabolites. Our findings are expected to provide new insights into the mechanisms of TCM in preventing and treating diseases and guidance for TCM-based drug discovery in the future.</p>","PeriodicalId":21778,"journal":{"name":"Sheng wu gong cheng xue bao = Chinese journal of biotechnology","volume":"41 6","pages":"2236-2255"},"PeriodicalIF":0.0,"publicationDate":"2025-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144476667","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Isolation and nitrogen transformation characterization of a moderately halophilic nitrification-aerobic denitrification strain Halomonas sp. 5505]. [中等嗜盐硝化-好氧反硝化菌株Halomonas sp. 5505的分离及氮转化特性]。
Sheng wu gong cheng xue bao = Chinese journal of biotechnology Pub Date : 2025-06-25 DOI: 10.13345/j.cjb.240749
Zhuobin Xie, Yun Wang, Gangqiang Jiang, Yuwei Li, Wenchang Li, Yifan Liu, Zhangxiu Wu, Yuanyuan Huang, Shukun Tang
{"title":"[Isolation and nitrogen transformation characterization of a moderately halophilic nitrification-aerobic denitrification strain <i>Halomonas</i> sp. 5505].","authors":"Zhuobin Xie, Yun Wang, Gangqiang Jiang, Yuwei Li, Wenchang Li, Yifan Liu, Zhangxiu Wu, Yuanyuan Huang, Shukun Tang","doi":"10.13345/j.cjb.240749","DOIUrl":"10.13345/j.cjb.240749","url":null,"abstract":"<p><p>The biological nitrogen removal technology utilizing heterotrophic nitrification-aerobic denitrification (HN-AD) bacteria has shown effectiveness in wastewater treatment. However, the nitrogen removal efficiency of HN-AD bacteria significantly decreases as the salinity increases. To tackle the challenge of treating high-salt and high-nitrogen wastewater, we isolated a moderately halophilic HN-AD strain 5505 from a salt lake in Xinjiang. The strain was identified based on morphological, physiological, and biochemical characteristics and the 16S rRNA gene sequence. Single-factor experiments were carried out with NH<sub>4</sub><sup>+</sup>-N, NO<sub>3</sub><sup>-</sup>-N, and NO<sub>2</sub><sup>-</sup>-N as sole or mixed nitrogen sources to study the nitrifying effect, denitrifying effect, and nitrogen metabolism pathway of the strain. The strain was identified as <i>Halomonas</i> sp.. It can grow in the presence of 1%-25% (<i>W</i>/<i>V</i>) NaCl and exhibited efficient nitrogen removal ability in the presence of 3%-8% NaCl. At the optimal NaCl concentration (8%), the strain showed the NH<sub>4</sub><sup>+</sup>-N, NO<sub>3</sub><sup>-</sup>-N and NO<sub>2</sub><sup>-</sup>-N removal rates of 100.0%, 94.11% and 74.43%, respectively. Strain 5505 removed inorganic nitrogen mainly by assimilation, which accounted for over 62.68% of total nitrogen removal. In the presence of mixed nitrogen sources, strain 5505 showed a preference for utilizing ammonia, with a potential HN-AD pathway of NH<sub>4</sub><sup>+</sup>→NH<sub>2</sub>OH→NO<sub>2</sub><sup>-</sup>→NO<sub>3</sub><sup>-</sup>→NO<sub>2</sub><sup>-</sup>→NO/N<sub>2</sub>O/N<sub>2</sub>. The findings provide efficient salt-tolerant bacterial resources, enhance our understanding of biological nitrogen removal, and contribute to the nitrogen removal efficiency improvement in the treatment of high-salt and high-nitrogen wastewater.</p>","PeriodicalId":21778,"journal":{"name":"Sheng wu gong cheng xue bao = Chinese journal of biotechnology","volume":"41 6","pages":"2467-2482"},"PeriodicalIF":0.0,"publicationDate":"2025-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144476653","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Preface for special issue on microbiome engineering]. 【微生物组工程专刊前言】。
Sheng wu gong cheng xue bao = Chinese journal of biotechnology Pub Date : 2025-06-25 DOI: 10.13345/j.cjb.250476
Shuangjiang Liu
{"title":"[Preface for special issue on microbiome engineering].","authors":"Shuangjiang Liu","doi":"10.13345/j.cjb.250476","DOIUrl":"10.13345/j.cjb.250476","url":null,"abstract":"<p><p>Microbiome engineering is an emerging interdisciplinary field that systematically investigates and applies engineering methods to uncover the functions, structures, and interaction mechanisms of microbial communities with their environments, offering critical insights into global challenges. To showcase the latest advancements and achievements in this field, Chinese Journal of biotechnology has specially organized a special issue, inviting experts and scholars from multiple domestic institutions to elaborate on the practical applications and potential of microbiome engineering in agriculture and industrial production, environmental and ecological restoration, and health and medical treatment, from perspectives of fundamental research, technological innovation, and engineering applications. Additionally, this issue explores future trends in the field, providing valuable references to promote innovation and contribute to the sustainable development of human society.</p>","PeriodicalId":21778,"journal":{"name":"Sheng wu gong cheng xue bao = Chinese journal of biotechnology","volume":"41 6","pages":"1-6"},"PeriodicalIF":0.0,"publicationDate":"2025-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144476659","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Acyl homoserine lactones facilitate the isolation and cultivation of Gram-negative bacteria from mouse intestine]. [酰基同丝氨酸内酯促进小鼠肠道革兰氏阴性菌的分离培养]。
Sheng wu gong cheng xue bao = Chinese journal of biotechnology Pub Date : 2025-06-25 DOI: 10.13345/j.cjb.240675
Changyu Wang, Qinghua Zhao, Chang Liu, Shuangjiang Liu
{"title":"[Acyl homoserine lactones facilitate the isolation and cultivation of Gram-negative bacteria from mouse intestine].","authors":"Changyu Wang, Qinghua Zhao, Chang Liu, Shuangjiang Liu","doi":"10.13345/j.cjb.240675","DOIUrl":"10.13345/j.cjb.240675","url":null,"abstract":"<p><p>N-dodecanoyl-l-homoserine lactone (C12-HSL) is a signaling molecule that mediates bacterial quorum sensing, regulating bacterial population behaviors. This study investigated the effects of C12-HSL on the isolation and cultivation of gut microbiota, with the goal of enriching the diversity and number of cultivable bacterial strains from the mouse gut microbiota. Using a culture medium supplemented with C12-HSL, we isolated and cultivated bacterial strains from mouse intestinal contents, obtaining a total of 235 isolates. Preliminary identification based on the 16S rRNA gene revealed 54 bacterial species, including 4 potential new species, 4 potential new genera and 1 potential new family. Compared with the previously established mouse gut microbial biobank (mGMB), this study newly identified 42 bacterial species, enhancing the diversity of the strain library. Statistical analysis showed that the proportion of Gram-negative bacteria, particularly those belonging to Proteobacteria, isolated by this method was significantly higher than that obtained by conventional isolation and cultivation methods without the addition of C12-HSL. Subsequent cultivation experiments with one of the newly discovered bacterial species indicated that exogenous C12-HSL at 20-200 μmol/L significantly promoted the growth of this species, while higher concentrations of C12-HSL significantly reduced the cell density of this bacterium. This work confirms that quorum sensing molecules, such as C12-HSL, can enhance the growth, isolation, and cultivation of Gram-negative bacteria in the gut within a specific concentration range. Although the mechanism by which C12-HSL promotes the growth of gut bacterial strains requires further investigation, the findings of this study provide new insights into the targeted isolation, cultivation, and regulation of gut microbiota using bacterial quorum sensing signal molecules.</p>","PeriodicalId":21778,"journal":{"name":"Sheng wu gong cheng xue bao = Chinese journal of biotechnology","volume":"41 6","pages":"2349-2359"},"PeriodicalIF":0.0,"publicationDate":"2025-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144476666","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Construction of an engineered probiotic strain for efficiently delivering chemokine CXCL12 and application of the strain in diabetic chronic wound healing]. [高效传递趋化因子CXCL12的工程益生菌菌株的构建及其在糖尿病慢性伤口愈合中的应用]。
Sheng wu gong cheng xue bao = Chinese journal of biotechnology Pub Date : 2025-06-25 DOI: 10.13345/j.cjb.240632
Shengjie Li, Huijuan Su, Xiaoting Li, Jing Wei, Tingtao Chen
{"title":"[Construction of an engineered probiotic strain for efficiently delivering chemokine CXCL12 and application of the strain in diabetic chronic wound healing].","authors":"Shengjie Li, Huijuan Su, Xiaoting Li, Jing Wei, Tingtao Chen","doi":"10.13345/j.cjb.240632","DOIUrl":"https://doi.org/10.13345/j.cjb.240632","url":null,"abstract":"<p><p>Diabetic chronic wounds are characterized by difficult healing, recurrent progression, and high rates of disability and mortality, which make their clinical treatment a medical challenge urgent to be addressed. However, the complex local microenvironment conditions of chronic wounds, such as high protease activity and persistent inflammatory responses, result in low bioavailability of exogenous cytokines (e.g., chemokine CXCL12) at the wound site, limiting their clinical application. In this study, we utilized <i>Lactobacillus plantarum</i> WCFS1 as the chassis to develop an efficient CXCL12 delivery system based on synthetic biology. Subsequently, we evaluated the role of the engineered probiotic strain in promoting the chronic wound healing in diabetic mice. Firstly, we fused the endogenous secretion signal peptide lp_3050 (SP<sub>lp_3050</sub>) of <i>L</i>. <i>plantarum</i> WCFS1 and the commonly used secretion signal peptide usp45 (SP<sub>usp45</sub>) of lactic acid bacteria with the reporter gene <i>gusA</i> and inserted them into the pTRK892-P<sub>32(pgm)</sub> plasmid by molecular cloning. Then, we prepared the engineered strains and characterized the efficacy of the two signal peptides in driving the secretion of GusA. The results showed that SP<sub>lp_3050</sub> efficiently drove the secretion of GusA in <i>L</i>. <i>plantarum</i> WCFS1, increasing the activity of GusA in the culture supernatant by nearly five times compared with that of SP<sub>lp_3050</sub>. Further, we fused SP<sub>lp_3050</sub> and codon-optimized CXCL12 gene to construct an engineered probiotic strain Lpw-CXCL12 for CXCL12 delivery. The results demonstrated that the content of CXCL12 in the culture supernatant reached (13.40±0.20) μg/mL. Finally, we found that the engineered probiotic strain Lpw-CXCL12 accelerated chronic wound healing in a diabetic mouse model. In conclusion, these results support an engineered probiotic strain in promoting diabetic chronic wound healing, providing a new strategy and technological foundation for the management of diabetic chronic wounds in the future.</p>","PeriodicalId":21778,"journal":{"name":"Sheng wu gong cheng xue bao = Chinese journal of biotechnology","volume":"41 6","pages":"2334-2348"},"PeriodicalIF":0.0,"publicationDate":"2025-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144476669","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Development of a miniaturized CRISPR/Cas gene editing tool for human gut Bacteroides]. [用于人类肠道拟杆菌的小型化CRISPR/Cas基因编辑工具的开发]。
Sheng wu gong cheng xue bao = Chinese journal of biotechnology Pub Date : 2025-06-25 DOI: 10.13345/j.cjb.240959
Yiwen Zhan, Linggang Zheng, Juntao Shen, Yucan Hu, Xuegang Luo, Lei Dai
{"title":"[Development of a miniaturized CRISPR/Cas gene editing tool for human gut <i>Bacteroides</i>].","authors":"Yiwen Zhan, Linggang Zheng, Juntao Shen, Yucan Hu, Xuegang Luo, Lei Dai","doi":"10.13345/j.cjb.240959","DOIUrl":"https://doi.org/10.13345/j.cjb.240959","url":null,"abstract":"<p><p><b>:</b> <i>Bacteroides</i>, as one of the most abundant and diverse genera in the human gut, is regarded as a window into the study of gut microbiota-host interactions. Currently, CRISPR/Cas-based gene editing systems targeting <i>Bacteroides</i> have been widely applied, while the large size of Cas nucleases limits their potential application scenarios (such as <i>in situ</i> gut <i>Bacteroides</i> editing based on phage delivery). Therefore, this study aims to develop a compact and highly efficient genetic editing tool in <i>Bacteroides</i>., We developed a miniaturized CRISPR/Cas gene editing system for human gut <i>Bacteroides</i>. First, the editing capabilities of different miniaturized CRISPR/Cas systems, including AsCas12f, CasΦ2, and ISDge10, were evaluated in <i>Bacteroides fragilis</i>. Subsequently, the editing capability of AsCas12f was assessed across various <i>Bacteroides</i> species, and the size of this system was further optimized. The results demonstrated that the CRISPR/AsCas12f genome editing system exhibited the highest editing efficiency in <i>B</i>. <i>fragilis</i>. The CRISPR/AsCas12f system achieved efficient genome editing in <i>B</i>. <i>fragilis</i>, <i>Bacteroides thetaiotaomicron</i>, and <i>Phocaeicola vulgatus</i>. Furthermore, with a repair template of 500 bp homologous arms, the editing efficiency remained as high as 94.7%. In conclusion, CRISPR/AsCas12f can serve as a chassis tool enzyme for the development of <i>Bacteroides</i>-based miniature gene editors and derivative technologies, laying a foundation for the further development of gene editing technology for <i>Bacteroides</i>.</p>","PeriodicalId":21778,"journal":{"name":"Sheng wu gong cheng xue bao = Chinese journal of biotechnology","volume":"41 6","pages":"2360-2372"},"PeriodicalIF":0.0,"publicationDate":"2025-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144476671","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Recombinant yeast-cell microcapsules carrying the DNA vaccine against enterotoxigenic Escherichia coli]. [携带抗产肠毒素大肠杆菌DNA疫苗的重组酵母细胞微胶囊]。
Sheng wu gong cheng xue bao = Chinese journal of biotechnology Pub Date : 2025-06-25 DOI: 10.13345/j.cjb.240753
Xiafang Zhao, Lihong DU, Baoxia Ma, Shaona Jia, Yufei Liu, Yufei Zhu, Xiaotao Ma, Xiaojun Yang, Kun Xu
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