Plant Molecular Biology Reporter最新文献_第8页

Genome-Wide Identification and Characterization of the SBT Gene Family in maize and Its Expression in the Various tissues 玉米SBT基因家族的全基因组鉴定、鉴定及其在各组织中的表达

IF 2.1 4区生物学

Plant Molecular Biology Reporter Pub Date : 2023-11-27 DOI: 10.1007/s11105-023-01422-5

Xiaodong Wang, Yanting Zhang, Dianjun Xiang, Meng Wang, Weiwei Zhang, Zhigang Li, Peng Liu

{"title":"Genome-Wide Identification and Characterization of the SBT Gene Family in maize and Its Expression in the Various tissues","authors":"Xiaodong Wang, Yanting Zhang, Dianjun Xiang, Meng Wang, Weiwei Zhang, Zhigang Li, Peng Liu","doi":"10.1007/s11105-023-01422-5","DOIUrl":"https://doi.org/10.1007/s11105-023-01422-5","url":null,"abstract":"Maize is one of the three major food or feed crops in China. Bacillus subtilis protease like serine protease (SBT) is a serine proteolytic enzyme, which widely exists in various organisms and participates in biological growth and defense. However, SBT genes functions remained uncharacterized in growth and stress response in maize. Therefore, here we characterized the SBT gene family of maize. In this study, we identified 59 maize SBT genes (ZmSBTs), which were divided into 6 subfamilies through phylogenetic analysis. ZmSBTs are distributed unevenly on 10 chromosomes in Maize. As expected, ZmSBTs contained cis-acting elements for plant growth and defense. In addition, the transcriptome data of different maize tissues shows the dynamic differential expression of ZmSBTs in different tissues. We also predicted the interaction of ZmSBT1.7 and ZmSBT2.5 specifically expressed in meiosis_tassels with other maize proteins. We revealed that the ZmSBT1.2 is specifically expressed in seeds with other maize proteins. This study provided valuable information about maize SBT gene family and clarified the possible biological functions of ZmSBT1.7, ZmSBT2.5, and ZmSBT1.2. The identified candidate genes could be used to breed higher-yielding Maize cultivars to feed the world population.","PeriodicalId":20215,"journal":{"name":"Plant Molecular Biology Reporter","volume":"27 28","pages":""},"PeriodicalIF":2.1,"publicationDate":"2023-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138494759","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

System Analysis of Differentially Expressed miRNAs in Hexaploid Wheat Display Tissue-Specific Regulatory Role During Fe-Deficiency Response 六倍体小麦差异表达mirna在缺铁反应中组织特异性调控作用的系统分析

IF 2.1 4区生物学

Plant Molecular Biology Reporter Pub Date : 2023-11-20 DOI: 10.1007/s11105-023-01421-6

Shivani Sharma, Dalwinder Singh, Riya Joon, Vishnu Shukla, Ajit Pal Singh, Palvinder Singh, Shrikant Mantri, Ajay K. Pandey

{"title":"System Analysis of Differentially Expressed miRNAs in Hexaploid Wheat Display Tissue-Specific Regulatory Role During Fe-Deficiency Response","authors":"Shivani Sharma, Dalwinder Singh, Riya Joon, Vishnu Shukla, Ajit Pal Singh, Palvinder Singh, Shrikant Mantri, Ajay K. Pandey","doi":"10.1007/s11105-023-01421-6","DOIUrl":"https://doi.org/10.1007/s11105-023-01421-6","url":null,"abstract":"Iron (Fe) is an essential mineral element, and its deficiency in soil largely affects crop productivity. In plants, the molecular mechanisms underlying the genetic regulation of Fe-deficiency responses pinpointing microRNA (miRNA)-mediated regulation of Fe-deficiency response and its regulatory network are largely unaddressed. In the present study, we performed a small RNA-targeted whole-genome transcriptome analysis from hexaploid wheat and identified small RNAs (sRNAs) responding to Fe deficiency. Detailed analysis identified 105 differentially expressed miRNAs corresponding to Fe-deficiency response, and nine miRNAs were found to be novel in this study. Interestingly, tissue-specific regulation of Fe-deficiency response also participates through miRNA-mediated regulation. We identified 17 shoot-specific miRNAs and 18 root-specific miRNAs with altered expression. We validated the tissue specificity of these miRNAs by stem-loop quantitative RT-PCR that confirmed a temporal regulation. Furthermore, an attempt was made to predict their targets to speculate their participation in Fe-deficiency response. The miRNA target prediction analysis suggested a few major target genes, such as multicopper oxidases, E3 ubiquitin ligases, GRAS family, and WRKY transcription factors; those are previously known to play key roles in Fe homeostasis. The first preliminary information generated here will classify the repository of wheat miRNAs (with few novel miRNAs) for their role in Fe-deficiency response. Our work provides insights into miRNA-mediated regulatory pathways during Fe deficiency.","PeriodicalId":20215,"journal":{"name":"Plant Molecular Biology Reporter","volume":"27 29","pages":""},"PeriodicalIF":2.1,"publicationDate":"2023-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138494758","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Uncovering Alternate Splicing Events and Premature Stop Codons Associated with Early Sucrose Accumulation in Sugarcane Using BSR-seq 利用BSR-seq揭示与甘蔗早期蔗糖积累相关的交替剪接事件和过早终止密码子

IF 2.1 4区生物学

Plant Molecular Biology Reporter Pub Date : 2023-11-17 DOI: 10.1007/s11105-023-01418-1

Nandita Banerjee, Sanjeev Kumar, Ayyadurai Anna Durai, Mamta Kumari, Sanjeev Kumar

{"title":"Uncovering Alternate Splicing Events and Premature Stop Codons Associated with Early Sucrose Accumulation in Sugarcane Using BSR-seq","authors":"Nandita Banerjee, Sanjeev Kumar, Ayyadurai Anna Durai, Mamta Kumari, Sanjeev Kumar","doi":"10.1007/s11105-023-01418-1","DOIUrl":"https://doi.org/10.1007/s11105-023-01418-1","url":null,"abstract":"Identification of the source of genetic variation in the large and complex genome of sugarcane has been comparatively less explored through next-generation sequencing tools. In this study, RNA-seq libraries of two extreme bulks from a segregating full-sib population and its parents were used to identify highly significant, alternate splicing (AS) events and premature stop codons (PMC) associated with early sucrose accumulation. An important differential AS event was identified within the β-subunit of pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) which plays a key role in carbon partitioning in sugarcane. Premature stop codons that could result in truncated proteins were also detected in genes coding for aquaporin, aldolase, cytochrome C-oxidase, ribophorin and plant plasma membrane intrinsic proteins. A major proportion of these AS events and premature stop codons was validated for their differential enrichment in an independent set of sugarcane varieties having high and low sucrose content. The results provide useful insights into the role of putative AS events and premature stop codons which could be useful as candidate markers in marker-assisted breeding for developing high sugar varieties in sugarcane.","PeriodicalId":20215,"journal":{"name":"Plant Molecular Biology Reporter","volume":"27 30","pages":""},"PeriodicalIF":2.1,"publicationDate":"2023-11-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138494757","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Genome-Wide Identification and Characterization of LIM Gene Family in Grapevine (Vitis vinifera L.) and Their Expression Analysis at Early Bud Developmental Stages 葡萄(Vitis vinifera L.) LIM基因家族的全基因组鉴定、特征及其在芽发育早期的表达分析

4区生物学

Plant Molecular Biology Reporter Pub Date : 2023-11-11 DOI: 10.1007/s11105-023-01416-3

Md. Abdur Rauf Sarkar, Salim Sarkar, Md Shohel Ul Islam, Fatema Tuz Zohra, Shaikh Mizanur Rahman

引用次数: 0

Population Genomics and Conservation of Copernicia alba: a Non-Timber Palm of Economic Importance in the Brazilian Chaco 白哥白尼的种群基因组学和保护:巴西查科一种具有重要经济意义的非木材棕榈

4区生物学

Plant Molecular Biology Reporter Pub Date : 2023-11-10 DOI: 10.1007/s11105-023-01419-0

Marcones Ferreira Costa, Jonathan Andre Morales Marroquín, Carlos Eduardo de Araújo Batista, Alessandro Alves-Pereira, Fábio de Almeida Vieira, Maria Imaculada Zucchi

引用次数: 0

Morphological and Molecular Characterization of Multiplier Onion (Allium cepa var. aggregatum) Genotypes 倍增器洋葱(Allium cepa var. aggregatum)基因型的形态和分子特征

4区生物学

Plant Molecular Biology Reporter Pub Date : 2023-10-31 DOI: 10.1007/s11105-023-01415-4

Amar Jeet Gupta, Yogesh P. Khade, V. Mahajan, S. R. Hange, R. S. Shalaka, Major Singh

引用次数: 0

eQTL-seq: a Rapid Genome-Wide Integrative Genetical Genomics Strategy to Dissect Complex Regulatory Architecture of Gene Expression Underlying Quantitative Trait Variation in Crop Plants eQTL-seq:一种快速全基因组整合遗传基因组策略，用于剖析作物植物数量性状变异背后的复杂基因表达调控结构

4区生物学

Plant Molecular Biology Reporter Pub Date : 2023-10-13 DOI: 10.1007/s11105-023-01411-8

Jitendra K. Mohanty, Uday Chand Jha, G. P. Dixit, Chellapilla Bharadwaj, Swarup K. Parida

引用次数: 0

MicroRNA: A Novel Micro-machineries to Target Crop Plants for Tolerance to Temperature Stress MicroRNA:一种靶向作物耐温度胁迫的新型微机械

4区生物学

Plant Molecular Biology Reporter Pub Date : 2023-10-12 DOI: 10.1007/s11105-023-01413-6

Nadia Gul, Javaid Ashraf Nowshehri, Mudasir Ahmad Mir, Saima Wani, Javid I Mir, M. Ashraf Bhat

引用次数: 0

SUMO and SUMOylation in Plants: Ignored Arsenal to Combat Abiotic Stress 植物中的SUMO和SUMO酰化:对抗非生物胁迫的被忽视的武器

4区生物学

Plant Molecular Biology Reporter Pub Date : 2023-10-11 DOI: 10.1007/s11105-023-01414-5

Radheshyam Yadav, Shivam Chaudhary, Wusirika Ramakrishna

引用次数: 0

Novel Microsatellite Markers Derived from Arachis pintoi Transcriptome Sequencing for Cross-Species Transferability and Varietal Identification pintoi花生转录组测序的新型微卫星标记用于跨物种可转移性和品种鉴定

4区生物学

Plant Molecular Biology Reporter Pub Date : 2023-10-10 DOI: 10.1007/s11105-023-01402-9

Jônatas Chagas de Oliveira, André Lucas Domingos da Silva, Luciélio Manoel da Silva, Eduardo Fernandes Formighieri, Leila Priscila Peters, Giselle Mariano Lessa de Assis, Carla Cristina da Silva, Anete Pereira de Souza, Tatiana de Campos

引用次数: 0