Pathology, research and practice最新文献

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Exploring circulating MiRNA signature for osteosarcoma detection: Bioinformatics-based analyzing and validation 探索用于骨肉瘤检测的循环 MiRNA 标志:基于生物信息学的分析与验证
IF 2.9 4区 医学
Pathology, research and practice Pub Date : 2024-10-01 DOI: 10.1016/j.prp.2024.155615
Negar Heidari , Massoud Vosough , Abolfazl Bagherifard , Sam Hajialilo Sami , Pedram Asadi Sarabi , Ali Behmanesh , Roshanak Shams
{"title":"Exploring circulating MiRNA signature for osteosarcoma detection: Bioinformatics-based analyzing and validation","authors":"Negar Heidari ,&nbsp;Massoud Vosough ,&nbsp;Abolfazl Bagherifard ,&nbsp;Sam Hajialilo Sami ,&nbsp;Pedram Asadi Sarabi ,&nbsp;Ali Behmanesh ,&nbsp;Roshanak Shams","doi":"10.1016/j.prp.2024.155615","DOIUrl":"10.1016/j.prp.2024.155615","url":null,"abstract":"<div><div>Early detection followed by efficient treatment still remain a considerable challenge for osteosarcoma (OS), indicating the importance of emerging innovative diagnostic methods. Circulating miRNAs offer a promising and non-invasive approach to assess the OS molecular landscapes. This study utilized RNAseq data from OS plasma miRNA expression profiles (PRJEB30542) and PCR Array data (GSE65071) from GEO and ENA databases. In total, 43 miRNAs demonstrated significant differential expression in OS samples of training dataset. A diagnostic model, including <em><strong>hsa-miR-30a-5p, hsa-miR-556–3p, hsa-miR-200a-3p, and hsa-miR-582–5p</strong></em> was identified through multivariate logistic regression analysis and demonstrated significant efficacy in differentiating OS patients from healthy controls in the validation group (AUC: 0.917, sensitivity: 1, specificity: 0.85). The result of target gene prediction and functional enrichment analyses revealed significant associations with terms such as epithelial morphogenesis, P53 and Wnt signaling pathways, and neoplasm metastasis. Further bioinformatics-based evaluations showed that the down-regulation of these miRNAs significantly correlates with poor prognosis and lower survival rate in OS patients and propose their tumor suppressor function in pathogenesis of OS. Furthermore, the study developed a miRNA-mRNA subnetwork that connects these miRNAs to the P53 and Wnt signaling pathways, which are critical pathways with oncogenic effects on OS progression. This comprehensive approach not only presents a promising diagnostic model but also proposes potential molecular markers for OS early diagnosis, making prognosis, and targeted therapy. The identified miRNA-mRNA functional axis holds promise as a valuable resource for further research in understanding OS pathogenesis and establishing therapeutic modalities.</div></div>","PeriodicalId":19916,"journal":{"name":"Pathology, research and practice","volume":"263 ","pages":"Article 155615"},"PeriodicalIF":2.9,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142392385","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Expression of claudin 18.2 in poorly cohesive carcinoma and its association with clinicopathologic parameters in East Asian patients 东亚贫粘连癌中 claudin 18.2 的表达及其与临床病理参数的关系。
IF 2.9 4区 医学
Pathology, research and practice Pub Date : 2024-09-30 DOI: 10.1016/j.prp.2024.155628
Moonsik Kim , Byung Woog Kang , Jihyun Park , Jin Ho Baek , Jong Gwang Kim
{"title":"Expression of claudin 18.2 in poorly cohesive carcinoma and its association with clinicopathologic parameters in East Asian patients","authors":"Moonsik Kim ,&nbsp;Byung Woog Kang ,&nbsp;Jihyun Park ,&nbsp;Jin Ho Baek ,&nbsp;Jong Gwang Kim","doi":"10.1016/j.prp.2024.155628","DOIUrl":"10.1016/j.prp.2024.155628","url":null,"abstract":"<div><h3>Background</h3><div>Poorly cohesive carcinoma (PCC) is a distinct subtype of gastric cancer with limited therapeutic options. This study investigated claudin (CLDN) 18.2 expression status in PCCs using a 43–13 A clone.</div></div><div><h3>Methods</h3><div>We retrospectively collected 178 consecutive surgically resected stage Ⅱ–Ⅲ gastric cancer samples. Tissue microarray blocks were constructed for CLDN18.2 immunohistochemical staining. We studied CLDN18.2 expression and its association with clinicopathologic parameters.</div></div><div><h3>Results</h3><div>CLDN18.2 positivity (defined by ≥ 75 % of tumor cells showing moderate to strong membranous positivity) was found in 34.8 % of the PCC cases (62/178). Approximately half of the CLDN18.2 positive PCCs demonstrated heterogeneous expression (51.6 %, 32/62). CLDN18.2 positivity was not associated with any clinicopathologic parameters examined. However, CLDN18.2 positivity tended to be more frequent in E-cadherin-positive PCCs (no loss of expression) than in E-cadherin-negative PCCs (loss of expression) (50 % <em>vs</em>. 27.7 %). The CLDN18.2 expression level, represented by the H-score, gradually decreased as the paraffin block storage time increased (<em>P</em> = 0.046). Overall survival and disease-free survival analyses showed no significant difference between CLDN18.2-positive and negative PCCs.</div></div><div><h3>Conclusions</h3><div>A significant portion of surgically resected PCC specimens showed CLDN18.2 positivity. Additionally, since the expression level of CLDN18.2 gradually decreases with increased paraffin block storage time, reflex testing can be considered at the time of the cancer diagnosis.</div></div>","PeriodicalId":19916,"journal":{"name":"Pathology, research and practice","volume":"263 ","pages":"Article 155628"},"PeriodicalIF":2.9,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142378165","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The impact of exosomes on bone health: A focus on osteoporosis 外泌体对骨骼健康的影响:关注骨质疏松症。
IF 2.9 4区 医学
Pathology, research and practice Pub Date : 2024-09-29 DOI: 10.1016/j.prp.2024.155618
Amir Mehrvar , Mohammadarian Akbari , Elaheh Mohandesi Khosroshahi , Mehrandokht Nekavand , Khatere Mokhtari , Mojtaba Baniasadi , Majid Aghababaian , Mansour Karimi , Shayan Amiri , Alireza Moazen , Mazaher Maghsoudloo , Mina Alimohammadi , Payman Rahimzadeh , Najma Farahani , Mohammad Eslami Vaghar , Maliheh Entezari , Mehrdad Hashemi
{"title":"The impact of exosomes on bone health: A focus on osteoporosis","authors":"Amir Mehrvar ,&nbsp;Mohammadarian Akbari ,&nbsp;Elaheh Mohandesi Khosroshahi ,&nbsp;Mehrandokht Nekavand ,&nbsp;Khatere Mokhtari ,&nbsp;Mojtaba Baniasadi ,&nbsp;Majid Aghababaian ,&nbsp;Mansour Karimi ,&nbsp;Shayan Amiri ,&nbsp;Alireza Moazen ,&nbsp;Mazaher Maghsoudloo ,&nbsp;Mina Alimohammadi ,&nbsp;Payman Rahimzadeh ,&nbsp;Najma Farahani ,&nbsp;Mohammad Eslami Vaghar ,&nbsp;Maliheh Entezari ,&nbsp;Mehrdad Hashemi","doi":"10.1016/j.prp.2024.155618","DOIUrl":"10.1016/j.prp.2024.155618","url":null,"abstract":"<div><div>Osteoporosis is a widespread chronic condition. Although standard treatments are generally effective, they are frequently constrained by side effects and the risk of developing drug resistance. A promising area of research is the investigation of extracellular vesicles (EVs), including exosomes, microvesicles, and apoptotic bodies, which play a crucial role in bone metabolism. Exosomes, in particular, have shown significant potential in both the diagnosis and treatment of osteoporosis. EVs derived from osteoclasts, osteoblasts, mesenchymal stem cells, and other sources can influence bone metabolism, while exosomes from inflammatory and tumor cells may exacerbate bone loss, highlighting their dual role in osteoporosis pathology. This review offers a comprehensive overview of EV biogenesis, composition, and function in osteoporosis, focusing on their diagnostic and therapeutic potential. We examine the roles of various types of EVs and their cargo—proteins, RNAs, and lipids—in bone metabolism. Additionally, we explore the emerging applications of EVs as biomarkers and therapeutic agents, emphasizing the need for further research to address current challenges and enhance EV-based strategies for managing osteoporosis.</div></div>","PeriodicalId":19916,"journal":{"name":"Pathology, research and practice","volume":"263 ","pages":"Article 155618"},"PeriodicalIF":2.9,"publicationDate":"2024-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142372497","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comprehensive clinicopathologic features in autoimmune atrophic gastritis: Insights from a European cohort of 57 patients 自身免疫性萎缩性胃炎的综合临床病理特征:从欧洲 57 例患者队列中获得的启示。
IF 2.9 4区 医学
Pathology, research and practice Pub Date : 2024-09-29 DOI: 10.1016/j.prp.2024.155631
Luiz M. Nova-Camacho , Saul De Burgos , Irune Ruiz Diaz , Katrina Collins
{"title":"Comprehensive clinicopathologic features in autoimmune atrophic gastritis: Insights from a European cohort of 57 patients","authors":"Luiz M. Nova-Camacho ,&nbsp;Saul De Burgos ,&nbsp;Irune Ruiz Diaz ,&nbsp;Katrina Collins","doi":"10.1016/j.prp.2024.155631","DOIUrl":"10.1016/j.prp.2024.155631","url":null,"abstract":"<div><h3>Context</h3><div>Autoimmune atrophic gastritis (AAG) is a frequently underdiagnosed disease due to its broad-spectrum clinical presentation. The diagnosis is based on histological confirmation of corpus-restricted metaplastic chronic atrophic gastritis.</div></div><div><h3>Objective</h3><div>To thoroughly describe the histological features of a European cohort of AAG patients.</div></div><div><h3>Design</h3><div>Clinical and pathological data of 57 out of 676 patients diagnosed with AAG were reviewed.</div></div><div><h3>Results</h3><div>Thirty-nine patients were female and eighteen were male. The mean age was 62 years. Antibodies were identified in 32/42 patients (76 %). Vitamin B12 levels were low (&lt; 200 pg/mL) in 37/54 patients (69 %). Serum gastrin levels was elevated (&gt; 115 pg/mL) in all cases tested. Associated autoimmune/inflammatory conditions were identified in 20/57 patients (35 %). Histologically, deep chronic inflammation was present in 46/57 (81 %) patients. Complete destruction of oxyntic glands was observed in 45/57 (79 %) patients. Pyloric metaplasia was present in 54/57 (95 %) patients, intestinal metaplasia in 51/57 (89 %) patients, and pancreatic metaplasia in 20/57 (35 %) patients. Among ECL cell proliferation, linear hyperplasia was present in all 57/57 patients, micronodular hyperplasia in 55/57 patients, and adenomatoid hyperplasia in 10/57 patients. ECL cell dysplasia was identified in 5/57 patients, and neuroendocrine microtumor in 4/57 patients.</div></div><div><h3>Conclusions</h3><div>The diagnosing of AAG remains challenging due to the greater variability in symptoms than previously recognized. It is important to consider chronic AAG, especially with other concurrent autoimmune conditions. The importance of accurate diagnosis and surveillance is based on the potential development of type 1 gastric neuroendocrine tumor and increased risk of gastric adenocarcinoma.</div></div>","PeriodicalId":19916,"journal":{"name":"Pathology, research and practice","volume":"263 ","pages":"Article 155631"},"PeriodicalIF":2.9,"publicationDate":"2024-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142366140","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Monocyte subpopulations in children with autoimmune liver disease 自身免疫性肝病患儿的单核细胞亚群。
IF 2.9 4区 医学
Pathology, research and practice Pub Date : 2024-09-28 DOI: 10.1016/j.prp.2024.155622
Maryna Dyba , Valentyna Berezenko , Dariia Zabara , Anna Bezpala , Boris Donskoi
{"title":"Monocyte subpopulations in children with autoimmune liver disease","authors":"Maryna Dyba ,&nbsp;Valentyna Berezenko ,&nbsp;Dariia Zabara ,&nbsp;Anna Bezpala ,&nbsp;Boris Donskoi","doi":"10.1016/j.prp.2024.155622","DOIUrl":"10.1016/j.prp.2024.155622","url":null,"abstract":"<div><h3>Background</h3><div>Patients with autoimmune liver diseases require individualized long-term immunosuppressive therapy, whose discontinuation is possible after complete histological remission and that requires repeated liver biopsy. In view of this, the search for non-invasive markers is essential for patients with autoimmune liver disease.</div></div><div><h3>Purpose</h3><div>The purpose of this research is to assess the possibility of predicting the recurrence of autoimmune liver disease in children.</div></div><div><h3>Method</h3><div>The biological material used in the study was blood serum from 80 children diagnosed with autoimmune hepatitis and autoimmune sclerosing cholangitis. Patients were divided into four groups according to disease activity and therapeutic approach.</div></div><div><h3>Results</h3><div>The percentage of monocyte subpopulations was determined by flow cytometry, and disease activity, inflammation, and fibrosis markers were analyzed to study the relationship and diagnostic value of the parameters studied in detail. The results of the study indicate a significant relationship between disease activity and changes in the distribution of the percentage of monocyte subpopulations in the blood. The percentage of intermediate CD14++/CD16+ monocytes was found to correlate with disease activity, and non-classical CD14lowCD16+ monocytes were found to be of high diagnostic value in the diagnosis of disease relapse.</div></div><div><h3>Conclusions</h3><div>These findings not only expand the understanding of the pathogenesis of autoimmune liver disease but also point to the prospects of using monocyte subpopulations as potential biomarkers for predicting relapse, contributing to the development of more effective clinical management strategies.</div></div>","PeriodicalId":19916,"journal":{"name":"Pathology, research and practice","volume":"263 ","pages":"Article 155622"},"PeriodicalIF":2.9,"publicationDate":"2024-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142366154","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Therapeutic potential of 18-β-glycyrrhetinic acid-loaded poly (lactic-co-glycolic acid) nanoparticles on cigarette smoke-induced in-vitro model of COPD 18-β-甘草亭酸负载聚(乳酸-共聚-乙醇酸)纳米粒子对香烟烟雾诱导的慢性阻塞性肺病体外模型的治疗潜力。
IF 2.9 4区 医学
Pathology, research and practice Pub Date : 2024-09-28 DOI: 10.1016/j.prp.2024.155629
Tammam El Sherkawi , Ayeh Bani Saeid , Stewart Yeung , Dinesh Kumar Chellappan , Siddiq Mohamad , Sofia Kokkinis , Swathi Sudhakar , Sachin Kumar Singh , Gaurav Gupta , Keshav Raj Paudel , Philip Michael Hansbro , Brian Oliver , Gabriele De Rubis , Kamal Dua
{"title":"Therapeutic potential of 18-β-glycyrrhetinic acid-loaded poly (lactic-co-glycolic acid) nanoparticles on cigarette smoke-induced in-vitro model of COPD","authors":"Tammam El Sherkawi ,&nbsp;Ayeh Bani Saeid ,&nbsp;Stewart Yeung ,&nbsp;Dinesh Kumar Chellappan ,&nbsp;Siddiq Mohamad ,&nbsp;Sofia Kokkinis ,&nbsp;Swathi Sudhakar ,&nbsp;Sachin Kumar Singh ,&nbsp;Gaurav Gupta ,&nbsp;Keshav Raj Paudel ,&nbsp;Philip Michael Hansbro ,&nbsp;Brian Oliver ,&nbsp;Gabriele De Rubis ,&nbsp;Kamal Dua","doi":"10.1016/j.prp.2024.155629","DOIUrl":"10.1016/j.prp.2024.155629","url":null,"abstract":"<div><div>Chronic obstructive pulmonary disease (COPD) is strongly linked to cigarette smoke, which contains toxins that induce oxidative stress and airway inflammation, ultimately leading to premature airway epithelial cell senescence and exacerbating COPD progression. Current treatments for COPD are symptomatic and hampered by limited efficacy and severe side effects. This highlights the need to search for an optimal therapeutic candidate to address the root causes of these conditions. This study investigates the possible potential of poly (lactic-co-glycolic acid) (PLGA)-based nanoparticles encapsulating the plant-based bioactive compound 18-β-glycyrrhetinic acid (18βGA) as a strategy to intervene in cigarette smoke extract (CSE)-induced oxidative stress, inflammation, and senescence, <em>in vitro</em>. We prepared 18βGA-PLGA nanoparticles, and assessed their effects on cell viability, reactive oxygen species (ROS) production, anti-senescence properties (expression of senescence-associated β galactosidase and p21 mRNA), and expression of pro-inflammatory genes (CXCL-1, IL-6, TNF-α) and inflammation-related proteins (IL-8, IL-15, RANTES, MIF). The highest non-toxic concentration of 18βGA-PLGA nanoparticles to healthy human broncho epithelial cell line BCiNS1.1 was identified as 5 µM. These nanoparticles effectively mitigated cigarette smoke-induced inflammation, reduced ROS production, protected against cellular aging, and counteracted the effects of CSE on the expression of the inflammation-related genes and proteins. This study underscores the potential of 18βGA encapsulated in PLGA nanoparticles as a promising therapeutic approach to alleviate cigarette smoke-induced oxidative stress, inflammation, and senescence. Further research is needed to explore the translational potential of these findings in clinical and <em>in vivo</em> settings.</div></div>","PeriodicalId":19916,"journal":{"name":"Pathology, research and practice","volume":"263 ","pages":"Article 155629"},"PeriodicalIF":2.9,"publicationDate":"2024-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142351731","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pyroptosis in lung cancer: The emerging role of non-coding RNAs 肺癌中的脓毒症:非编码 RNA 的新作用
IF 2.9 4区 医学
Pathology, research and practice Pub Date : 2024-09-28 DOI: 10.1016/j.prp.2024.155619
Lakshmi Thangavelu , Ahsas Goyal , Muhammad Afzal , Ehssan Moglad , Sushama Rawat , Imran Kazmi , Sami I. Alzarea , Waleed Hassan Almalki , Richa Rani , Pusuluri Madhubabu , Pranchal Rajput , Pooja Bansal
{"title":"Pyroptosis in lung cancer: The emerging role of non-coding RNAs","authors":"Lakshmi Thangavelu ,&nbsp;Ahsas Goyal ,&nbsp;Muhammad Afzal ,&nbsp;Ehssan Moglad ,&nbsp;Sushama Rawat ,&nbsp;Imran Kazmi ,&nbsp;Sami I. Alzarea ,&nbsp;Waleed Hassan Almalki ,&nbsp;Richa Rani ,&nbsp;Pusuluri Madhubabu ,&nbsp;Pranchal Rajput ,&nbsp;Pooja Bansal","doi":"10.1016/j.prp.2024.155619","DOIUrl":"10.1016/j.prp.2024.155619","url":null,"abstract":"<div><div>Lung cancer remains an intractable malignancy worldwide, prompting novel therapeutic modalities. Pyroptosis, a lethal form of programmed cell death featured by inflammation, has been involved in cancer progression and treatment response. Simultaneously, non-coding RNA has been shown to have important roles in coordinating pattern formation and oncogenic pathways, including long non-coding RNA (lncRNAs), microRNA (miRNAs), circular RNA (circRNAs), and small interfering RNA (siRNAs). Recent studies have revealed that ncRNAs can promote or inhibit pyroptosis by interacting with key molecular players such as NLRP3, GSDMD, and various transcription factors. This dual role of ncRNAs offers a unique therapeutic potential to manipulate pyroptosis pathways, providing opportunities for innovative cancer treatments. In this review, we integrate current research findings to propose novel strategies for leveraging ncRNA-mediated pyroptosis as a therapeutic intervention in lung cancer. We explore the potential of ncRNAs as biomarkers for predicting patient response to treatment and as targets for overcoming resistance to conventional therapies.</div></div>","PeriodicalId":19916,"journal":{"name":"Pathology, research and practice","volume":"263 ","pages":"Article 155619"},"PeriodicalIF":2.9,"publicationDate":"2024-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142366158","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
All-in-one bimodal DNA and RNA next-generation sequencing panel for integrative diagnosis of glioma 用于胶质瘤综合诊断的一体化双模 DNA 和 RNA 下一代测序面板。
IF 2.9 4区 医学
Pathology, research and practice Pub Date : 2024-09-28 DOI: 10.1016/j.prp.2024.155598
Nayuta Higa , Toshiaki Akahane , Mari Kirishima , Hajime Yonezawa , Ryutaro Makino , Hiroyuki Uchida , Seiya Yokoyama , Tomoko Takajo , Ryosuke Otsuji , Yutaka Fujioka , Yuhei Sangatsuda , Daisuke Kuga , Hitoshi Yamahata , Nobuhiro Hata , Nobutaka Horie , Masamichi Kurosaki , Junkoh Yamamoto , Koji Yoshimoto , Akihide Tanimoto , Ryosuke Hanaya
{"title":"All-in-one bimodal DNA and RNA next-generation sequencing panel for integrative diagnosis of glioma","authors":"Nayuta Higa ,&nbsp;Toshiaki Akahane ,&nbsp;Mari Kirishima ,&nbsp;Hajime Yonezawa ,&nbsp;Ryutaro Makino ,&nbsp;Hiroyuki Uchida ,&nbsp;Seiya Yokoyama ,&nbsp;Tomoko Takajo ,&nbsp;Ryosuke Otsuji ,&nbsp;Yutaka Fujioka ,&nbsp;Yuhei Sangatsuda ,&nbsp;Daisuke Kuga ,&nbsp;Hitoshi Yamahata ,&nbsp;Nobuhiro Hata ,&nbsp;Nobutaka Horie ,&nbsp;Masamichi Kurosaki ,&nbsp;Junkoh Yamamoto ,&nbsp;Koji Yoshimoto ,&nbsp;Akihide Tanimoto ,&nbsp;Ryosuke Hanaya","doi":"10.1016/j.prp.2024.155598","DOIUrl":"10.1016/j.prp.2024.155598","url":null,"abstract":"<div><div>Previously, we constructed a DNA-based next-generation sequencing (NGS) panel for an integrated diagnosis of gliomas according to the 2021 World Health Organization classification system. The aim of the current study was to evaluate the feasibility of a modified panel to include fusion gene detection via RNA-based analysis. Using this bimodal DNA/RNA panel, we analyzed 210 cases of gliomas and others to identify fusion genes in addition to gene alterations, including <em>TERT</em> promoter (<em>TERTp</em>) mutation and 1p/19q co-deletion, in formalin-fixed paraffin-embedded tissues. Of the 210 patients, fusion genes were detected in tumors of 35 patients. Eighteen of 112 glioblastomas (GBs) harbored fusion genes, including <em>EGFR</em> and <em>FGFR3</em> fusions. In <em>IDH</em>-mutant astrocytoma, 6 of 30 cases showed fusion genes such as <em>MET</em> and <em>NTRK2</em> fusions. Eleven molecular GBs and 20 not-elsewhere-classified cases harbored no gene fusions. Other 11 tumors including ependymoma, pilocytic astrocytoma, diffuse hemispheric glioma, infant-type hemispheric glioma, and solitary fibrous tumors exhibited diagnostic fusion genes. Overall, our results suggest that the all-in-one bimodal DNA/RNA panel is reliable for detecting diagnostic gene alterations in accordance with the latest WHO classification. The integrative pathological and molecular strategy could be valuable in confirmation of diagnosis and selection of treatment options for brain tumors.</div></div>","PeriodicalId":19916,"journal":{"name":"Pathology, research and practice","volume":"263 ","pages":"Article 155598"},"PeriodicalIF":2.9,"publicationDate":"2024-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142366139","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring the gut microbiome and head and neck cancer interplay 探索肠道微生物组与头颈癌之间的相互作用。
IF 2.9 4区 医学
Pathology, research and practice Pub Date : 2024-09-28 DOI: 10.1016/j.prp.2024.155603
Veeksha V Shetty, Shilpa S Shetty
{"title":"Exploring the gut microbiome and head and neck cancer interplay","authors":"Veeksha V Shetty,&nbsp;Shilpa S Shetty","doi":"10.1016/j.prp.2024.155603","DOIUrl":"10.1016/j.prp.2024.155603","url":null,"abstract":"<div><div>The gut microbiome, a complex community of microorganisms residing in the gastrointestinal tract, plays a crucial role in maintaining human health and influencing disease outcomes. Recent advancements in sequencing technologies have revealed the intricate relationship between gut microbiota and various health conditions. This review explores the impact of gut microbiome dysbiosis on immune function, chronic inflammation, and cancer progression. Dysbiosis, characterized by an imbalance in microbial populations, can lead to immune dysfunction, creating a pro-inflammatory environment conducive to tumorigenesis. Gut microbiome metabolites, such as short-chain fatty acids and bile acids, also play a significant role in modulating these processes. The interplay between these factors contributes to the development and progression of HNC. Furthermore, this review highlights the potential of therapeutic interventions targeting the gut microbiome, including probiotics, prebiotics, and dietary modifications, to restore microbial balance and mitigate cancer risk. Understanding the mechanisms by which the gut microbiome influences HNC can provide valuable insights into novel preventive and therapeutic strategies. Future research should focus on elucidating the specific microbial taxa and metabolites involved in HNC, as well as the impact of lifestyle factors such as diet, alcohol consumption, and oral hygiene on the gut microbiome. By leveraging the growing knowledge of the gut microbiome, it may be possible to develop personalized approaches to cancer prevention and treatment, ultimately improving patient outcomes.</div></div>","PeriodicalId":19916,"journal":{"name":"Pathology, research and practice","volume":"263 ","pages":"Article 155603"},"PeriodicalIF":2.9,"publicationDate":"2024-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142378164","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LINC00365 as a potential biomarker for total nephrectomy in advanced-stage renal cell carcinoma patients LINC00365 作为晚期肾细胞癌患者全肾切除术的潜在生物标记物
IF 2.9 4区 医学
Pathology, research and practice Pub Date : 2024-09-27 DOI: 10.1016/j.prp.2024.155630
Fatemeh Taghavinia , Iman Akhlaghipour , Alireza Golshan , Azadeh Aarabi , Mohammad Reza Abbaszadegan , Meysam Moghbeli
{"title":"LINC00365 as a potential biomarker for total nephrectomy in advanced-stage renal cell carcinoma patients","authors":"Fatemeh Taghavinia ,&nbsp;Iman Akhlaghipour ,&nbsp;Alireza Golshan ,&nbsp;Azadeh Aarabi ,&nbsp;Mohammad Reza Abbaszadegan ,&nbsp;Meysam Moghbeli","doi":"10.1016/j.prp.2024.155630","DOIUrl":"10.1016/j.prp.2024.155630","url":null,"abstract":"<div><h3>Background</h3><div>Renal cell carcinoma (RCC) is one of the most frequent urological cancers globally that has a good prognosis in the early tumor stages. However, there is a poor prognosis in metastatic RCC patients. Therefore, it is needed to evaluate the molecular biology of RCC progression to introduce the efficient diagnostic and therapeutic markers in these patients. Long non-coding RNAs (lncRNAs) have key roles in regulation of molecular mechanisms during RCC progression. In the present study, we assessed the levels of LINC00365 expressions in RCC patients to suggest that as a tumor marker in these patients.</div></div><div><h3>Methods</h3><div>Fifty fresh RCC tumor tissues and their normal margins were collected to assess the levels of LINC00365 expressions and probable correlations with clinicopathological features of RCC patients.</div></div><div><h3>Results</h3><div>There was significant LINC00365 up regulation in females compared with males (p=0.050). Among the RCC patients with total nephrectomy, there was a significant LINC00365 up regulation in advanced stage compared with primary stage tumors (p=0.035). RCC patients older than 60 years old who were undergone the total nephrectomy had also significant LINC00365 up regulation compared with RCC patients younger than 60 years old (p=0.039).</div></div><div><h3>Conclusions</h3><div>given the significant increase in LINC00365 expression in advanced stage RCC tumors and patients over 60 years old who had total nephrectomy; it could serve as a useful diagnostic marker in screening programs for old high-risk individuals. It was also noticed that female RCC patients had elevated levels of LINC00365 expressions in their tumor samples, suggesting its potential use as a gender-specific diagnostic marker for high-risk females. Nevertheless, evaluating the levels of LINC00365 in serum samples of RCC patients is necessary to suggest that as a reliable diagnostic marker in clinical settings.</div></div>","PeriodicalId":19916,"journal":{"name":"Pathology, research and practice","volume":"263 ","pages":"Article 155630"},"PeriodicalIF":2.9,"publicationDate":"2024-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142356697","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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