Molecular Cytogenetics最新文献

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Prenatal diagnosis and early childhood outcome of fetuses with extremely large nuchal translucency. 颈透明异常大的胎儿的产前诊断和幼儿结局。
IF 1.3 4区 生物学
Molecular Cytogenetics Pub Date : 2023-09-02 DOI: 10.1186/s13039-023-00650-4
Hang Zhou, Xin Yang, CuiXing Yi, Huizhu Zhong, Simin Yuan, Min Pan, Dongzhi Li, Can Liao
{"title":"Prenatal diagnosis and early childhood outcome of fetuses with extremely large nuchal translucency.","authors":"Hang Zhou, Xin Yang, CuiXing Yi, Huizhu Zhong, Simin Yuan, Min Pan, Dongzhi Li, Can Liao","doi":"10.1186/s13039-023-00650-4","DOIUrl":"10.1186/s13039-023-00650-4","url":null,"abstract":"<p><strong>Objective: </strong>To evaluate the prenatal and perinatal outcome of fetuses with extremely large nuchal translucency (eNT) thickness (≥ 6.5 mm).</p><p><strong>Methods: </strong>193 (0.61%) singleton fetuses with eNT were retrospectively included. Anomaly scan, echocardiography, and chromosomal and genetic test were included in our antenatal investigation. Postnatal follow-up was offered to all newborns.</p><p><strong>Results: </strong>Major congenital anomalies included congenital heart defect (32.6%, 63/193), hydrops fetalis (13.5%, 26/193), omphalocele (9.3%, 18/193), and skeletal dysplasia (7.8%, 15/193) et al. Abnormal karyotype was identified in 81/115 (70.4%) cases including Turner syndrome (n = 47), Trisomy 18 (n = 17), Trisomy 21 (n = 9), and Trisomy 13 (n = 3). Chromosomal microarray analysis provided informative results with 3.6% (1/28) incremental diagnostic yield over conventional karyotyping. The diagnostic yield of exome sequencing is 10.0% (2/20). There was no significant increase [Odds Ratio (OR) = 1.974; 95% confidence interval 0.863-4.516; P = 0.104] in the incidence of chromosomal defects despite the presence of other structural anomalies. Only 13 fetuses were successfully followed up and survived at term, no one was found with developmental delay or mental retardation.</p><p><strong>Conclusions: </strong>Extremely large NT has a high risk of chromosomal abnormality. CMA and ES improve chromosomal genomic and genetic diagnosis of fetal increased NT. When cytogenetic analysis and morphology assessment are both normal, the outcome is good.</p>","PeriodicalId":19099,"journal":{"name":"Molecular Cytogenetics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2023-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10475177/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10504977","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A de novo mutation of ADAMTS8 in a patient with Wiedemann-Steiner syndrome. Wiedemann-Steiner综合征患者ADAMTS8的新生突变
IF 1.3 4区 生物学
Molecular Cytogenetics Pub Date : 2023-08-30 DOI: 10.1186/s13039-023-00654-0
Sifeng Wang, Shuyuan Yan, Jingjun Xiao, Ying Chen, Anji Chen, Aimin Deng, Tuanmei Wang, Jun He, Xiangwen Peng
{"title":"A de novo mutation of ADAMTS8 in a patient with Wiedemann-Steiner syndrome.","authors":"Sifeng Wang, Shuyuan Yan, Jingjun Xiao, Ying Chen, Anji Chen, Aimin Deng, Tuanmei Wang, Jun He, Xiangwen Peng","doi":"10.1186/s13039-023-00654-0","DOIUrl":"10.1186/s13039-023-00654-0","url":null,"abstract":"<p><strong>Background: </strong>Wiedemann-Steiner syndrome (WDSTS) is a rare autosomal dominant disorder caused by mutations in the KMT2A gene and is usually characterized by hairy elbows, short stature, developmental delay, intellectual disability and obvious facial dysmorphism.</p><p><strong>Case presentation: </strong>Here, we report a 5-year-old girl with clinical features similar to WDSTS, including postnatal growth delay, retarded intellectual development, and ocular hypertelorism. Through whole-exome sequencing (WES), a frameshift variant of KMT2A was found in the patient but not in her parents' genomic DNA. By bioinformatics analysis, the KMT2A variant was demonstrated to be the top candidate pathogenic variant for the clinical phenotype consistent with WDSTS. Moreover, a duplication of exon 1 in ADAMTS8 (belonging to the zinc metalloproteinase family) was found in the genomic DNA of this patient, which may be responsible for the characteristics that are different from those of WDSTS, including early teething, rapid tooth replacement, and dysplastic enamel.</p><p><strong>Conclusions: </strong>From the above results, we propose that in our patient, the frameshift variant in KMT2A is the main reason for the WDSTS phenotype, and the unreported mutation in ADAMTS8 may be the candidate reason for other characteristics that are different from those of WDSTS. Therefore, this study not only provides a new KMT2A variant associated with WDSTS but is also a reminder that combined mutations may be present in a case with more characteristics than those seen in WDSTS.</p>","PeriodicalId":19099,"journal":{"name":"Molecular Cytogenetics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2023-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10469774/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10139630","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prenatal diagnosis of paternal uniparental disomy for chromosome 2 in two fetuses with intrauterine growth restriction. 2例宫内生长受限胎儿父系2号染色体单亲二体的产前诊断。
IF 1.3 4区 生物学
Molecular Cytogenetics Pub Date : 2023-08-23 DOI: 10.1186/s13039-023-00647-z
Xuemei Tan, Bailing Liu, Tizhen Yan, Xiaobao Wei, Yanfeng Qin, Dingyuan Zeng, Dejian Yuan
{"title":"Prenatal diagnosis of paternal uniparental disomy for chromosome 2 in two fetuses with intrauterine growth restriction.","authors":"Xuemei Tan, Bailing Liu, Tizhen Yan, Xiaobao Wei, Yanfeng Qin, Dingyuan Zeng, Dejian Yuan","doi":"10.1186/s13039-023-00647-z","DOIUrl":"10.1186/s13039-023-00647-z","url":null,"abstract":"<p><p>Uniparental disomy (UPD) is when all or part of the homologous chromosomes are inherited from only one of the two parents. Currently, UPD has been reported to occur for almost all chromosomes. In this study, we report two cases of UPD for chromosome 2 (UPD2) encountered during prenatal diagnosis. The ultrasound findings of the fetuses from two unrelated families showed intrauterine growth restriction. The karyotype analyses were normal. The two fetuses both had complete paternal chromosome 2 uniparental disomy detected by whole-exome sequencing, but their clinical outcomes were significantly different, with fetal arrest in case 1 and birth in case 2. In this report, we analyzed and discussed the phenotypes of the fetuses in these two cases and reviewed the literature on UPD2.</p>","PeriodicalId":19099,"journal":{"name":"Molecular Cytogenetics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2023-08-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464012/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10118206","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A novel approach for direct detection of the IGH::CRLF2 gene fusion by fluorescent in situ hybridization. 利用荧光原位杂交直接检测IGH::CRLF2基因融合的新方法。
IF 1.3 4区 生物学
Molecular Cytogenetics Pub Date : 2023-08-13 DOI: 10.1186/s13039-023-00652-2
Rosa María González-Arreola, Adriana García-Romero, María Teresa Magaña-Torres, Juan Ramón González-García
{"title":"A novel approach for direct detection of the IGH::CRLF2 gene fusion by fluorescent in situ hybridization.","authors":"Rosa María González-Arreola, Adriana García-Romero, María Teresa Magaña-Torres, Juan Ramón González-García","doi":"10.1186/s13039-023-00652-2","DOIUrl":"10.1186/s13039-023-00652-2","url":null,"abstract":"<p><strong>Background: </strong>High expression of the Cytokine Receptor-Like Factor 2 (CRLF2) gene has been observed in patients with acute lymphoblastic leukemia BCR-ABL1-like subtype. Currently, there is no commercial system available for the direct detection of the IGH::CRLF2 fusion by fluorescent in situ hybridization (FISH), as there are for many other leukemia-related gene fusions. In an effort to verify the IGH::CRLF2 fusion, some researchers prepare home-grown FISH probes from bacterial artificial chromosome clones flanking the IGH and CRLF2 genes, which is the best alternative to confirm the fusion, however difficult to reproduce in most cytogenetic laboratories.</p><p><strong>Results: </strong>For the direct observation of the IGH::CRLF2 gene fusion we designed a methodological approach requiring the two commercially available IGH and CRLF2 break-apart probes.</p><p><strong>Conclusions: </strong>Our methodological approach allows direct visualization of the IGH::CRLF2 gene fusion and has the potential to be used for identification of other gene fusions.</p>","PeriodicalId":19099,"journal":{"name":"Molecular Cytogenetics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2023-08-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10423412/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9995275","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of a novel isolated 4q35.2 microdeletion in a Chinese pediatric patient using chromosomal microarray analysis: a case report and literature review. 利用染色体微阵列分析鉴定中国儿童患者中一个新的分离的4q35.2微缺失:病例报告和文献综述
IF 1.3 4区 生物学
Molecular Cytogenetics Pub Date : 2023-08-02 DOI: 10.1186/s13039-023-00651-3
Jianlong Zhuang, Shufen Liu, Xinying Chen, Yuying Jiang, Chunnuan Chen
{"title":"Identification of a novel isolated 4q35.2 microdeletion in a Chinese pediatric patient using chromosomal microarray analysis: a case report and literature review.","authors":"Jianlong Zhuang,&nbsp;Shufen Liu,&nbsp;Xinying Chen,&nbsp;Yuying Jiang,&nbsp;Chunnuan Chen","doi":"10.1186/s13039-023-00651-3","DOIUrl":"https://doi.org/10.1186/s13039-023-00651-3","url":null,"abstract":"<p><strong>Background: </strong>Isolated terminal 4q35.2 microdeletion is an extremely rare copy number variant affecting people all over the world. To date, researchers still have controversial opinions and results on its pathogenicity. Here, we aim to present a Chinese pediatric patient with terminal 4q35.2 microdeletion and use this case to clarify the underlying genotype-phenotype correlation.</p><p><strong>Methods: </strong>A 17-year-old boy from Quanzhou, South China, was recruited as the main subject in this study. Karyotype and single-nucleotide polymorphism (SNP) based microarray analysis were carried out to detect chromosomal abnormalities and copy number variants in this family. Trio whole exome sequencing (Trio-WES) was performed to investigate the potential pathogenic variant in this family.</p><p><strong>Results: </strong>During observation, we identified abnormal clinical phenotypes including upper eyelid ptosis, motor developmental delay, abnormal posturing, abnormality of coordination, attention deficit hyperactivity disorder, and involuntary movements in the patient. SNP array analysis results confirmed a case of 2.0 Mb 4q35.2 microdeletion and parental SNP array verification results indicated that the terminal 4q35.2 microdeletion was inherited from his mother. No copy number variants were detected in his father. In addition, the trio-WES results demonstrated none of pathogenic or likely pathogenic variants in the patient.</p><p><strong>Conclusions: </strong>This study brings a novel analysis of a case of 2.0 Mb terminal 4q35.2 microdeletion affecting a Chinese individual. In addition, additional clinical symptoms such as upper eyelid ptosis and involuntary movements were first reported to affect a patient with terminal 4q35.2 microdeletion, which may broaden the phenotype spectrum of the condition.</p>","PeriodicalId":19099,"journal":{"name":"Molecular Cytogenetics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2023-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10399047/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10295114","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Investigating residual leukemic cells in acute lymphoblastic leukemia: a practical approach using a streamlined interphase fluorescence in situ hybridization method on cerebrospinal fluid. 急性淋巴细胞白血病残留白血病细胞的研究:脑脊液流线型间期荧光原位杂交法的实用方法。
IF 1.3 4区 生物学
Molecular Cytogenetics Pub Date : 2023-07-27 DOI: 10.1186/s13039-023-00649-x
Knarik Karapetyan, Mane Gizhlaryan, Olga Kalinovskaia, Anna Hovhannisyan, Gohar Tadevosyan, Lilit Matinyan, Gevorg Tamamyan, Narine Ghazaryan
{"title":"Investigating residual leukemic cells in acute lymphoblastic leukemia: a practical approach using a streamlined interphase fluorescence in situ hybridization method on cerebrospinal fluid.","authors":"Knarik Karapetyan,&nbsp;Mane Gizhlaryan,&nbsp;Olga Kalinovskaia,&nbsp;Anna Hovhannisyan,&nbsp;Gohar Tadevosyan,&nbsp;Lilit Matinyan,&nbsp;Gevorg Tamamyan,&nbsp;Narine Ghazaryan","doi":"10.1186/s13039-023-00649-x","DOIUrl":"https://doi.org/10.1186/s13039-023-00649-x","url":null,"abstract":"<p><strong>Introduction: </strong>A precise diagnosis of central nervous system involvement in acute lymphoblastic leukemia (ALL) requires comprehensive knowledge of morphological analysis, with a focus on the quantity and quality of cells being examined. Some research has utilized techniques such as immunocytochemistry, flow cytometry, polymerase chain reaction (PCR), and interphase fluorescence in situ hybridization (iFISH) on cerebrospinal fluid (CSF) cytospin samples to detect any remaining leukemic cells in the CSF. To obtain reliable results using immunocytochemistry and flow cytometry, it is essential to use freshly collected specimens within a limited timeframe. At the same time, PCR requires a sufficient number of cells for DNA extraction. On the other hand, the iFISH procedure on CSF cytospin samples can be challenging and requires practice. Therefore, there is a need for a fast, easy method that will be affordable and marketable in laboratories where the above methods are not available, or the sample is insufficient to use those methods.</p><p><strong>Methods: </strong>The samples were prepared by centrifugation of 1 mL aliquots of CSF collected into EDTA tubes. The CSF sample was centrifuged at 3000 rpm for 3 min, the supernatant was removed, and the pellet was placed in KCl hypotonic solution for 5 min at 37 °C. Other steps (fixation, hybridization, wash steps, and analysis) were the same as in the standard protocol for blood samples. The BCR-ABL1 rearrangements were performed and evaluated in 200 interphase cells.</p><p><strong>Results: </strong>90% of Ph(+) cells were found in CSF.</p><p><strong>Conclusion: </strong>We propose a significantly streamlined iFISH method for detecting blast/residual leukemic cells in acute lymphoblastic leukemia using CSF as a complementary test option.</p>","PeriodicalId":19099,"journal":{"name":"Molecular Cytogenetics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2023-07-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10375734/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9873817","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Two cases of placental trisomy 21 mosaicism causing false-negative NIPT results. 胎盘21三体嵌合导致NIPT结果假阴性2例。
IF 1.3 4区 生物学
Molecular Cytogenetics Pub Date : 2023-07-14 DOI: 10.1186/s13039-023-00643-3
Qinfei Zhao, Jing Chen, Ling Ren, Huijuan Zhang, Dedong Liu, Xuxiang Xi, Xiangsheng Wu, Chunyun Fang, Ping Ye, Shaoying Zeng, Tianyu Zhong
{"title":"Two cases of placental trisomy 21 mosaicism causing false-negative NIPT results.","authors":"Qinfei Zhao,&nbsp;Jing Chen,&nbsp;Ling Ren,&nbsp;Huijuan Zhang,&nbsp;Dedong Liu,&nbsp;Xuxiang Xi,&nbsp;Xiangsheng Wu,&nbsp;Chunyun Fang,&nbsp;Ping Ye,&nbsp;Shaoying Zeng,&nbsp;Tianyu Zhong","doi":"10.1186/s13039-023-00643-3","DOIUrl":"https://doi.org/10.1186/s13039-023-00643-3","url":null,"abstract":"<p><strong>Background: </strong>Non-invasive prenatal testing (NIPT) using cell-free DNA has been widely used for prenatal screening to detect the common fetal aneuploidies (such as trisomy 21, 18, and 13). NIPT has been shown to be highly sensitive and specific in previous studies, but false positives (FPs) and false negatives (FNs) occur. Although the prevalence of FN NIPT results for Down syndrome is rare, the impact on families and society is significant.</p><p><strong>Case presentation: </strong>This article described two cases of foetuses that tested \"negative\" for trisomy 21 by NIPT technology using the semiconductor sequencing platform. However, the fetal karyotypes of amniotic fluid were 46,XY, + 21 der(21;21)(q10;q10) and 47,XY, + 21 karyotypes, respectively. Placental biopsies confirmed that, in the first case, the chromosome 21 placenta chimerism ratio ranged from 13 to 88% with the 46,XX, + 21,der(21;21)(q10;q10)[86]/46,XX[14] karyotype of placental chorionic cells (middle of fetal-side placental tissue). However, in the second case, of all the placental biopsies, percentage of total chimerism was less than 30%; and placental biopsies taken at the middle of maternal side and middle of fetal side, also had variable trisomy 2 mosaicism levels of 10% and 8%, respectively. Ultimately, the pregnancies were interrupted at 30 gestational age (GA) and 27GA, respectively.</p><p><strong>Conclusions: </strong>In this study, we present two cases of FN NIPT results that might have been caused by biological mechanisms, as opposed to poor quality, technical errors, or negligence. Clinical geneticists and their patients must understand that NIPT is a screening procedure.</p>","PeriodicalId":19099,"journal":{"name":"Molecular Cytogenetics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2023-07-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10347865/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9814539","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
17q25.3 copy number changes: association with neurodevelopmental disorders and cardiac malformation. 17q25.3拷贝数变化:与神经发育障碍和心脏畸形有关。
IF 1.3 4区 生物学
Molecular Cytogenetics Pub Date : 2023-07-10 DOI: 10.1186/s13039-023-00644-2
Nikhil Shri Sahajpal, David H F Jeffrey, Barbara R DuPont, Benjamin Hilton
{"title":"17q25.3 copy number changes: association with neurodevelopmental disorders and cardiac malformation.","authors":"Nikhil Shri Sahajpal,&nbsp;David H F Jeffrey,&nbsp;Barbara R DuPont,&nbsp;Benjamin Hilton","doi":"10.1186/s13039-023-00644-2","DOIUrl":"https://doi.org/10.1186/s13039-023-00644-2","url":null,"abstract":"<p><p>Copy number variants (CNVs) have been identified as common genomic variants that play a significant role in inter-individual variability. Conversely, rare recurrent CNVs have been found to be causal for many disorders with well-established genotype-phenotype relationships. However, the phenotypic implications of rare non-recurrent CNVs remain poorly understood. Herein, we re-investigated 18,542 cases reported from chromosomal microarray at Greenwood Genetic Center from 2010 to 2022 and identified 15 cases with CNVs involving the 17q25.3 region. We report the detailed clinical features of these subjects, and compare with the cases reported in the literature to determine genotype-phenotype correlations for a subset of genes in this region. The CNVs in the 17q25.3 region were found to be rare events, with a prevalence of 0.08% (15/18542) observed in our cohort. The CNVs were dispersed across the entire 17q25.3 region with variable breakpoints and no smallest region of overlap. The subjects presented with a wide range of clinical features, with neurodevelopmental disorders (autism spectrum disorder, intellectual disability, developmental delay) being the most common features (80%), then expressive language disorder (33%), and finally cardiovascular malformations (26%). The association of CNVs involving the critical gene-rich region of 17q25.3 with neurodevelopmental disorders and cardiac malformation, implicates several genes as plausible drivers for these events.</p>","PeriodicalId":19099,"journal":{"name":"Molecular Cytogenetics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2023-07-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10334611/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9813627","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome-wide detection of CNV regions between Anqing six-end-white and Duroc pigs. 安庆六端白猪与杜洛克猪CNV区域的全基因组检测。
IF 1.3 4区 生物学
Molecular Cytogenetics Pub Date : 2023-07-03 DOI: 10.1186/s13039-023-00646-0
Rong Qian, Fei Xie, Wei Zhang, JuanJuan Kong, Xueli Zhou, Chonglong Wang, Xiaojin Li
{"title":"Genome-wide detection of CNV regions between Anqing six-end-white and Duroc pigs.","authors":"Rong Qian,&nbsp;Fei Xie,&nbsp;Wei Zhang,&nbsp;JuanJuan Kong,&nbsp;Xueli Zhou,&nbsp;Chonglong Wang,&nbsp;Xiaojin Li","doi":"10.1186/s13039-023-00646-0","DOIUrl":"https://doi.org/10.1186/s13039-023-00646-0","url":null,"abstract":"<p><strong>Background: </strong>Anqing six-end-white pig is a native breed in Anhui Province. The pigs have the disadvantages of a slow growth rate, low proportion of lean meat, and thick back fat, but feature the advantages of strong stress resistance and excellent meat quality. Duroc pig is an introduced pig breed with a fast growth rate and high proportion of lean meat. With the latter breed featuring superior growth characteristics but inferior meat quality traits, the underlying molecular mechanism that causes these phenotypic differences between Chinese and foreign pigs is still unclear.</p><p><strong>Results: </strong>In this study, copy number variation (CNV) detection was performed using the re-sequencing data of Anqing Six-end-white pigs and Duroc pigs, A total of 65,701 CNVs were obtained. After merging the CNVs with overlapping genomic positions, 881 CNV regions (CNVRs) were obtained. Based on the obtained CNVR information combined with their positions on the 18 chromosomes, a whole-genome map of the pig CNVs was drawn. GO analysis of the genes in the CNVRs showed that they were primarily involved in the cellular processes of proliferation, differentiation, and adhesion, and primarily involved in the biological processes of fat metabolism, reproductive traits, and immune processes.</p><p><strong>Conclusion: </strong>The difference analysis of the CNVs between the Chinese and foreign pig breeds showed that the CNV of the Anqing six-end-white pig genome was higher than that of the introduced pig breed Duroc. Six genes related to fat metabolism, reproductive performance, and stress resistance were found in genome-wide CNVRs (DPF3, LEPR, MAP2K6, PPARA, TRAF6, NLRP4).</p>","PeriodicalId":19099,"journal":{"name":"Molecular Cytogenetics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2023-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10316616/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10301708","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characteristics and mechanisms of mosaicism in prenatal diagnosis cases by application of SNP array. 应用SNP阵列分析产前诊断病例的嵌合体特征及机制。
IF 1.3 4区 生物学
Molecular Cytogenetics Pub Date : 2023-07-03 DOI: 10.1186/s13039-023-00648-y
Lili Zhou, Huanzheng Li, Chenyang Xu, Xueqin Xu, Zhaoke Zheng, Shaohua Tang
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引用次数: 2
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