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Characteristics of δ-Aminolevulinic Acid Dehydratase of the Cold-Water Sponge Halisarca dujardinii 冷水海绵 Halisarca dujardinii 的 δ-Aminolevulinic Acid Dehydratase 的特征
IF 1.2 4区 生物学
Molecular Biology Pub Date : 2023-12-07 DOI: 10.1134/s0026893323060109
O. I. Kravchuk, A. D. Finoshin, K. V. Mikhailov, R. H. Ziganshin, K. I. Adameyko, N. G. Gornostaev, A. I. Zhurakovskaya, V. S. Mikhailov, E. I. Shagimardanova, Yu. V. Lyupina
{"title":"Characteristics of δ-Aminolevulinic Acid Dehydratase of the Cold-Water Sponge Halisarca dujardinii","authors":"O. I. Kravchuk, A. D. Finoshin, K. V. Mikhailov, R. H. Ziganshin, K. I. Adameyko, N. G. Gornostaev, A. I. Zhurakovskaya, V. S. Mikhailov, E. I. Shagimardanova, Yu. V. Lyupina","doi":"10.1134/s0026893323060109","DOIUrl":"https://doi.org/10.1134/s0026893323060109","url":null,"abstract":"<h3 data-test=\"abstract-sub-heading\">Abstract</h3><p>δ-Aminolevulinic acid dehydratase (ALAD) is a key enzyme of the cytoplasmic heme biosynthesis pathway. The primary structure of the <i>ALAD</i> gene, the multimeric structure of the ALAD/hemB protein, and <i>ALAD</i> expression during the annual reproductive cycle were studied in the cold-water marine sponge <i>Halisarca dujardinii</i>. The results implicated the GATA-1 transcription factor and DNA methylation in regulating <i>ALAD</i> expression. Re-aggregation of sponge cells was accompanied by a decrease in <i>ALAD</i> expression and a change in the cell content of an active ALAD/hemB form. Further study of heme biosynthesis and the role of ALAD/hemB in morphogenesis of basal animals may provide new opportunities for treating pathologies in higher animals.</p>","PeriodicalId":18734,"journal":{"name":"Molecular Biology","volume":"58 1","pages":""},"PeriodicalIF":1.2,"publicationDate":"2023-12-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138556507","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Thymic Hormone Thymosin-1α Reduces the Pro-Inflammatory Response of Raw 264.7 Cells Induced by Endotoxin 胸腺激素胸腺素-1α可降低内毒素诱导的生264.7细胞的促炎反应
IF 1.2 4区 生物学
Molecular Biology Pub Date : 2023-12-07 DOI: 10.1134/s0026893323060110
E. G. Novoselova, O. V. Glushkova, M. O. Khrenov, S. M. Lunin, M. G. Sharapov, R. G. Goncharov, E. K. Mubarakshina, T. V. Novoselova, S. B. Parfenyuk
{"title":"The Thymic Hormone Thymosin-1α Reduces the Pro-Inflammatory Response of Raw 264.7 Cells Induced by Endotoxin","authors":"E. G. Novoselova, O. V. Glushkova, M. O. Khrenov, S. M. Lunin, M. G. Sharapov, R. G. Goncharov, E. K. Mubarakshina, T. V. Novoselova, S. B. Parfenyuk","doi":"10.1134/s0026893323060110","DOIUrl":"https://doi.org/10.1134/s0026893323060110","url":null,"abstract":"<p><b>Abstract</b>—The aim of this work was to study the effects of thymosin-1 alpha (Tα1) on the anti-inflammatory response of RAW 264.7 macrophages cultured in the presence of lipopolysaccharide (LPS) from the walls of gram-negative bacteria. As well, we evaluated production of pro-inflammatory cytokines and the activity of the NF-κB and SAPK/JNK signaling pathways. In addition, the level of expression of a number of genes that regulate cell apoptosis, as well as the activity of receptors involved in the pro-inflammatory response, was determined. First, the addition of Tα1 normalized the level of cytokine production to varying degrees, with a particularly noticeable effect on IL-1β and IL-6. Second, the addition of Tα1 normalized the activity of the NF-κB and SAPK/JNK signaling cascades and the expression of the <i>Tlr4</i> gene. Third, Tα1 significantly reduced p53 and the activity of the <i>P53</i> gene, which is a marker of cell apoptosis. Fourth, it was shown that the increase in <i>Ar-1</i> gene expression under the influence of LPS was significantly reduced using Tα1. Thus, it was found that the presence of Tα1 in the RAW 264.7 cell culture medium significantly reduced the level of the pro-inflammatory response of cells.</p>","PeriodicalId":18734,"journal":{"name":"Molecular Biology","volume":"68 1","pages":""},"PeriodicalIF":1.2,"publicationDate":"2023-12-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138556307","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Role of Mitochondria in Intestinal Epithelial Barrier Dysfunction in Inflammatory Bowel Disease 线粒体在炎症性肠病肠道上皮屏障功能障碍中的作用
IF 1.2 4区 生物学
Molecular Biology Pub Date : 2023-12-01 DOI: 10.1134/S0026893323060043
D. A. Chernyavskij, I. I. Galkin, A. N. Pavlyuchenkova, A. Fedorov, M. Chelombitko
{"title":"Role of Mitochondria in Intestinal Epithelial Barrier Dysfunction in Inflammatory Bowel Disease","authors":"D. A. Chernyavskij, I. I. Galkin, A. N. Pavlyuchenkova, A. Fedorov, M. Chelombitko","doi":"10.1134/S0026893323060043","DOIUrl":"https://doi.org/10.1134/S0026893323060043","url":null,"abstract":"","PeriodicalId":18734,"journal":{"name":"Molecular Biology","volume":" 809","pages":"1024 - 1037"},"PeriodicalIF":1.2,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138610738","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Neuronal Calcium Sensor-1: A Zinc/Redox-Dependent Protein of Nervous System Signaling Pathways 神经元钙传感器-1:神经系统信号通路的锌/氧化还原依赖蛋白
IF 1.2 4区 生物学
Molecular Biology Pub Date : 2023-12-01 DOI: 10.1134/S002689332306002X
V. E. Baksheeva, Jr A. A. Zamyatnin, E. Y. Zernii
{"title":"Neuronal Calcium Sensor-1: A Zinc/Redox-Dependent Protein of Nervous System Signaling Pathways","authors":"V. E. Baksheeva, Jr A. A. Zamyatnin, E. Y. Zernii","doi":"10.1134/S002689332306002X","DOIUrl":"https://doi.org/10.1134/S002689332306002X","url":null,"abstract":"","PeriodicalId":18734,"journal":{"name":"Molecular Biology","volume":"5 11","pages":"1097-1124"},"PeriodicalIF":1.2,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138621362","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Low-Molecular Thiols as a Factor Improving the Sensitivity of Escherichia coli Mutants with Impaired ADP–Heptose Synthesis to Antibiotics 低分子硫醇是提高 ADP-缩酮合成受损的大肠杆菌突变体对抗生素敏感性的一个因素
IF 1.2 4区 生物学
Molecular Biology Pub Date : 2023-12-01 DOI: 10.1134/S0026893323060146
T. A. Seregina, I. Petrushanko, P. I. Zaripov, Yu. D. Kuleshova, K. V. Lobanov, R. Shakulov, V. Mitkevich, A. Makarov, A. Mironov
{"title":"Low-Molecular Thiols as a Factor Improving the Sensitivity of Escherichia coli Mutants with Impaired ADP–Heptose Synthesis to Antibiotics","authors":"T. A. Seregina, I. Petrushanko, P. I. Zaripov, Yu. D. Kuleshova, K. V. Lobanov, R. Shakulov, V. Mitkevich, A. Makarov, A. Mironov","doi":"10.1134/S0026893323060146","DOIUrl":"https://doi.org/10.1134/S0026893323060146","url":null,"abstract":"","PeriodicalId":18734,"journal":{"name":"Molecular Biology","volume":"121 20","pages":"993 - 1003"},"PeriodicalIF":1.2,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138608295","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transcription Factor NRF2 in Endothelial Functions 内皮功能中的转录因子 NRF2
IF 1.2 4区 生物学
Molecular Biology Pub Date : 2023-12-01 DOI: 10.1134/S0026893323060092
N. D. Kondratenko, L. A. Zinovkina, R. Zinovkin
{"title":"Transcription Factor NRF2 in Endothelial Functions","authors":"N. D. Kondratenko, L. A. Zinovkina, R. Zinovkin","doi":"10.1134/S0026893323060092","DOIUrl":"https://doi.org/10.1134/S0026893323060092","url":null,"abstract":"","PeriodicalId":18734,"journal":{"name":"Molecular Biology","volume":"5 4","pages":"1052 - 1069"},"PeriodicalIF":1.2,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138624169","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dinityrosyl Iron Complexes with Thiol-Containing Ligands as a Functionally Active “Working Form” of Nitric Oxide System in Living Organisms: A Review 含硫醇配体的二蒽络合铁作为生物体内一氧化氮系统的一种功能活跃的 "工作形式":综述
IF 1.2 4区 生物学
Molecular Biology Pub Date : 2023-12-01 DOI: 10.1134/S0026893323060183
A. F. Vanin
{"title":"Dinityrosyl Iron Complexes with Thiol-Containing Ligands as a Functionally Active “Working Form” of Nitric Oxide System in Living Organisms: A Review","authors":"A. F. Vanin","doi":"10.1134/S0026893323060183","DOIUrl":"https://doi.org/10.1134/S0026893323060183","url":null,"abstract":"","PeriodicalId":18734,"journal":{"name":"Molecular Biology","volume":"25 2","pages":"929 - 940"},"PeriodicalIF":1.2,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138623561","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Upregulation of MHC I Antigen Processing Machinery Gene Expression in Breast Cancer Cells by Trichostatin A Trichostatin A 上调乳腺癌细胞中 MHC I 抗原加工机制基因的表达
IF 1.2 4区 生物学
Molecular Biology Pub Date : 2023-12-01 DOI: 10.1134/S0026893324010151
A. H. Murtadha, N. A. Sharudin, I. I. Azahar, A. T. C. Has, N. F. Mokhtar
{"title":"Upregulation of MHC I Antigen Processing Machinery Gene Expression in Breast Cancer Cells by Trichostatin A","authors":"A. H. Murtadha, N. A. Sharudin, I. I. Azahar, A. T. C. Has, N. F. Mokhtar","doi":"10.1134/S0026893324010151","DOIUrl":"https://doi.org/10.1134/S0026893324010151","url":null,"abstract":"","PeriodicalId":18734,"journal":{"name":"Molecular Biology","volume":"26 11‐12","pages":"1212-1227"},"PeriodicalIF":1.2,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138627200","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Development of SpCas9 Variants with High Specificity and Efficiency Based on the HH Theory 基于HH理论的SpCas9高特异性高效变异的开发
IF 1.2 4区 生物学
Molecular Biology Pub Date : 2023-11-22 DOI: 10.1134/s0026893324010187
G. H. Wang, C. M. Wang, X. J. Wu, T. Chu, D. W. Huang, J. Li
{"title":"The Development of SpCas9 Variants with High Specificity and Efficiency Based on the HH Theory","authors":"G. H. Wang, C. M. Wang, X. J. Wu, T. Chu, D. W. Huang, J. Li","doi":"10.1134/s0026893324010187","DOIUrl":"https://doi.org/10.1134/s0026893324010187","url":null,"abstract":"<h3 data-test=\"abstract-sub-heading\">Abstract</h3><p><i>Streptococcus pyogenes</i> Cas9 (SpCas9) is the most popular tool in gene editing; however, off-target mutagenesis is one of the biggest impediments in its application. In our previous study, we proposed the HH theory, which states that sgRNA/DNA hybrid (hybrid) extrusion-induced enhancement of hydrophobic interactions between the hybrid and REC3/HNH is a key factor in cleavage initiation. Based on the HH theory, we analyzed the interactions between the REC3 domain and hybrid and obtained 8 mutant sites. We designed 8 SpCas9 variants (V1–V8), used digital droplet PCR to assess SpCas9-induced DNA indels in human cells, and developed high-fidelity variants. Thus, the HH theory may be employed to further optimize SpCas9-mediated genome editing systems, and the resultant V3, V6, V7, and V8 SpCas9 variants may be valuable for applications requiring high-precision genome editing.</p>","PeriodicalId":18734,"journal":{"name":"Molecular Biology","volume":"69 1","pages":""},"PeriodicalIF":1.2,"publicationDate":"2023-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138539949","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Latent Macrophage and Immature B Cell Lines Generated with Hygromycin-Resistant Murine Gammaherpesvirus 68 Genome Expresses Modest Levels of Viral miRNAs 耐潮霉素小鼠γ疱疹病毒68基因组产生的潜伏巨噬细胞和未成熟B细胞系表达适度水平的病毒mirna
IF 1.2 4区 生物学
Molecular Biology Pub Date : 2023-11-22 DOI: 10.1134/s0026893324010138
M. Kara
{"title":"Latent Macrophage and Immature B Cell Lines Generated with Hygromycin-Resistant Murine Gammaherpesvirus 68 Genome Expresses Modest Levels of Viral miRNAs","authors":"M. Kara","doi":"10.1134/s0026893324010138","DOIUrl":"https://doi.org/10.1134/s0026893324010138","url":null,"abstract":"<h3 data-test=\"abstract-sub-heading\">Abstract</h3><p>Murine gammaherpesvirus 68 (MHV68) establishes latency mainly in B cells and causes lymphomas reminiscent of human gammaherpesvirus diseases in laboratory mice. To study the molecular mechanism of virus infection and how the viral determinants control cell and eventually cause tumorigenesis, readily available latently infected cell lines are essential. For in vitro MHV68 latency studies, only two cell culture systems have been available. Gammaherpesviruses are known to infect developing B cells and macrophages, therefore we aimed to expand the MHV68 latently infected cell line repertoire. Here, several latently infected immature B cell and macrophage-like cell line clones were generated. Hygromycin-resistant recombinant MHV68 was isolated from a laboratory-made latent cell line, HE2.1, and propagated to develop stable cell lines that carry the viral genome under hygromycin selection. Subclones of these cells lines were analyzed for viral miRNA expression by TaqMan qPCR and assessed for expression of a lytic viral transcript M3. The cell lines maintain the viral genome as an episome shown by the digestion-circularization PCR assay. Latently infected cell lines generated here do not express viral miRNAs higher than the parental cell line. However, these cell lines may provide an alternative tool to study latency mechanisms and miRNA target identification studies.</p>","PeriodicalId":18734,"journal":{"name":"Molecular Biology","volume":"57 1","pages":""},"PeriodicalIF":1.2,"publicationDate":"2023-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138539960","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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