Microbial Ecology最新文献

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Plant G × Microbial E: Plant Genotype Interaction with Soil Bacterial Community Shapes Rhizosphere Composition During Invasion 植物 G × 微生物 E:植物基因型与土壤细菌群落的相互作用塑造了入侵过程中的根瘤菌层组成
IF 3.6 3区 生物学
Microbial Ecology Pub Date : 2024-09-11 DOI: 10.1007/s00248-024-02429-5
Mae Berlow, Miles Mesa, Mikayla Creek, Jesse G. Duarte, Elizabeth Carpenter, Brandon Phinizy, Krikor Andonian, Katrina M. Dlugosch
{"title":"Plant G × Microbial E: Plant Genotype Interaction with Soil Bacterial Community Shapes Rhizosphere Composition During Invasion","authors":"Mae Berlow, Miles Mesa, Mikayla Creek, Jesse G. Duarte, Elizabeth Carpenter, Brandon Phinizy, Krikor Andonian, Katrina M. Dlugosch","doi":"10.1007/s00248-024-02429-5","DOIUrl":"https://doi.org/10.1007/s00248-024-02429-5","url":null,"abstract":"<p>It is increasingly recognized that different genetic variants of hosts can uniquely shape their microbiomes. Invasive species often evolve in their introduced ranges, but little is known about the potential for their microbial associations to change during invasion as a result. We asked whether host genotype (G), microbial environment (E), or their interaction (G × E) affected the composition and diversity of host-associated microbiomes in <i>Centaurea solstitialis</i> (yellow starthistle), a Eurasian plant that is known to have evolved novel genotypes and phenotypes and to have altered microbial interactions, in its severe invasion of CA, USA. We conducted an experiment in which native and invading plant genotypes were inoculated with native and invaded range soil microbial communities. We used amplicon sequencing to characterize rhizosphere bacteria in both the experiment and the field soils from which they were derived. We found that native and invading plant genotypes accumulated different microbial associations at the family level in each soil community, often counter to differences in family abundance between soil communities. Root associations with potentially beneficial Streptomycetaceae were particularly interesting, as these were more abundant in the invaded range field soil and accumulated on invading genotypes. We also found that bacterial diversity is higher in invaded soils, but that invading genotypes accumulated a lower diversity of bacteria and unique microbial composition in experimental inoculations, relative to native genotypes. Thus variation in microbial associations of invaders was driven by the interaction of plant G and microbial E, and rhizosphere microbial communities appear to change in composition in response to host evolution during invasion.</p>","PeriodicalId":18708,"journal":{"name":"Microbial Ecology","volume":"20 1","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142218542","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Geographical, Seasonal, and Growth-Related Dynamics of Gut Microbiota in a Grapevine Pest, Apolygus spinolae (Heteroptera: Miridae). 葡萄害虫 Apolygus spinolae(异翅目: Miridae)肠道微生物群的地理、季节和生长动态。
IF 3.3 3区 生物学
Microbial Ecology Pub Date : 2024-09-09 DOI: 10.1007/s00248-024-02426-8
Hiroyuki Morimura, Kota Ishigami, Tomoyuki Sato, Teruo Sone, Yoshitomo Kikuchi
{"title":"Geographical, Seasonal, and Growth-Related Dynamics of Gut Microbiota in a Grapevine Pest, Apolygus spinolae (Heteroptera: Miridae).","authors":"Hiroyuki Morimura, Kota Ishigami, Tomoyuki Sato, Teruo Sone, Yoshitomo Kikuchi","doi":"10.1007/s00248-024-02426-8","DOIUrl":"10.1007/s00248-024-02426-8","url":null,"abstract":"<p><p>A number of insects are associated with gut symbiotic microorganisms, wherein symbiotic partners play pivotal metabolic roles for each other such as nutrient supplementation, diet degradation, and pesticide detoxification. Despite the ecological and evolutionary importance of gut microbial communities in insects, their diversity and dynamics remain unclear in many species. The green plant bug Apolygus spinolae, a notorious grapevine pest in Japan, damages grape shoots and severely reduces grape berry yield and quality. The plant bug possesses a simple tubular gut housing ~ 10<sup>4</sup> bacteria. Here, we investigated geographic, seasonal, and growth-related dynamics of gut microbiota by high-throughput sequencing in 82 individuals (11 nymphs and 71 adults) from five locations in Hokkaido, Japan. In plant bugs, gut microbiota changed dynamically depending on region, season, and developmental stage. Among the gut bacteria, Serratia was consistently and abundantly detected and was significantly affected by seasonal changes. In addition, Caballeronia, known as a specific symbiont in some stinkbug species, was abundantly detected, especially in insects collected in late summer despite A. spinolae complete lack of midgut crypts known as symbiotic organ harboring Caballeronia in other stinkbug species. Considering their prevalence among host bug populations, it is possible these gut microorganisms play a pivotal role in the adaptation of the green plant bug to grapevine fields, although further confirmation through rearing experiments is needed.</p>","PeriodicalId":18708,"journal":{"name":"Microbial Ecology","volume":"87 1","pages":"112"},"PeriodicalIF":3.3,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11383845/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142154570","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effects of Detoxifying Substances on Uranium Removal by Bacteria Isolated from Mine Soils: Performance, Mechanisms, and Bacterial Communities. 解毒物质对矿山土壤中分离出的细菌去除铀的影响:性能、机制和细菌群落。
IF 3.3 3区 生物学
Microbial Ecology Pub Date : 2024-09-05 DOI: 10.1007/s00248-024-02428-6
Xin Song, Jun Li, Zhiyu Xiong, Haichao Sha, Guohua Wang, Qin Liu, Taotao Zeng
{"title":"Effects of Detoxifying Substances on Uranium Removal by Bacteria Isolated from Mine Soils: Performance, Mechanisms, and Bacterial Communities.","authors":"Xin Song, Jun Li, Zhiyu Xiong, Haichao Sha, Guohua Wang, Qin Liu, Taotao Zeng","doi":"10.1007/s00248-024-02428-6","DOIUrl":"10.1007/s00248-024-02428-6","url":null,"abstract":"<p><p>In this study, we investigated the effect of detoxifying substances on U(VI) removal by bacteria isolated from mine soil. The results demonstrated that the highest U(VI) removal efficiency (85.6%) was achieved at pH 6.0 and a temperature of 35 °C, with an initial U(VI) concentration of 10 mg/L. For detoxifying substances, signaling molecules acyl homoserine lactone (AHLs, 0.1 µmol/L), anthraquinone-2, 6-disulfonic acid (AQDS, 1 mmol/L), reduced glutathione (GSH, 0.1 mmol/L), selenium (Se, 1 mg/L), montmorillonite (MT, 1 g/L), and ethylenediaminetetraacetic acid (EDTA, 0.1 mmol/L) substantially enhanced the bacterial U(VI) removal by 34.9%, 37.4%, 54.5%, 35.1%, 32.8%, and 47.8% after 12 h, respectively. This was due to the alleviation of U(VI) toxicity in bacteria through detoxifying substances, as evidenced by lower malondialdehyde (MDA) content and higher superoxide dismutase (SOD) and catalase (CAT) activities for bacteria exposed to U(VI) and detoxifying substances, compared to those exposed to U(VI) alone. FTIR results showed that hydroxyl, carboxyl, phosphorus, and amide groups participated in the U(VI) removal. After exposure to U(VI), the relative abundances of Chryseobacterium and Stenotrophomonas increased by 48.5% and 12.5%, respectively, suggesting their tolerance ability to U(VI). Gene function prediction further demonstrated that the detoxifying substances AHLs alleviate U(VI) toxicity by influencing bacterial metabolism. This study suggests the potential application of detoxifying substances in the U(VI)-containing wastewater treatment through bioremediation.</p>","PeriodicalId":18708,"journal":{"name":"Microbial Ecology","volume":"87 1","pages":"111"},"PeriodicalIF":3.3,"publicationDate":"2024-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11374843/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142133201","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Abrolhos Nominally Herbivorous Coral Reef Fish Acanthurus chirurgus, Kyphosus sp., Scarus trispinosus, and Sparisoma axillare Have Similarities in Feeding But Species-Specific Microbiomes. 以食草为生的珊瑚礁鱼类Acanthurus chirurgus、Kyphosus sp.、Scarus trispinosus和Sparisoma axillare的摄食方式相似,但微生物组具有物种特异性。
IF 3.3 3区 生物学
Microbial Ecology Pub Date : 2024-08-31 DOI: 10.1007/s00248-024-02423-x
Cristiane Thompson, Raphael Silva, Fernando Z Gibran, Leonardo Bacha, Mayanne A M de Freitas, Mateus Thompson, Felipe Landuci, Diogo Tschoeke, Xiao-Hua Zhang, Xiaolei Wang, Wenbin Zhao, Pedro Vianna Gatts, Marcelo Gomes de Almeida, Carlos Eduardo de Rezende, Fabiano Thompson
{"title":"The Abrolhos Nominally Herbivorous Coral Reef Fish Acanthurus chirurgus, Kyphosus sp., Scarus trispinosus, and Sparisoma axillare Have Similarities in Feeding But Species-Specific Microbiomes.","authors":"Cristiane Thompson, Raphael Silva, Fernando Z Gibran, Leonardo Bacha, Mayanne A M de Freitas, Mateus Thompson, Felipe Landuci, Diogo Tschoeke, Xiao-Hua Zhang, Xiaolei Wang, Wenbin Zhao, Pedro Vianna Gatts, Marcelo Gomes de Almeida, Carlos Eduardo de Rezende, Fabiano Thompson","doi":"10.1007/s00248-024-02423-x","DOIUrl":"10.1007/s00248-024-02423-x","url":null,"abstract":"<p><p>Coral reefs rely heavily on reef fish for their health, yet overfishing has resulted in their decline, leading to an increase in fast-growing algae and changes in reef ecosystems, a phenomenon described as the phase-shift. A clearer understanding of the intricate interplay between herbivorous, their food, and their gut microbiomes could enhance reef health. This study examines the gut microbiome and isotopic markers (δ<sup>13</sup>C and δ<sup>15</sup>N) of four key nominally herbivorous reef fish species (Acanthurus chirurgus, Kyphosus sp., Scarus trispinosus, and Sparisoma axillare) in the Southwestern Atlantic's Abrolhos Reef systems. Approximately 16.8 million 16S rRNA sequences were produced for the four fish species, with an average of 317,047 ± 57,007 per species. Bacteria such as Proteobacteria, Firmicutes, and Cyanobacteria were prevalent in their microbiomes. These fish show unique microbiomes that result from co-diversification, diet, and restricted movement. Coral-associated bacteria (Endozoicomonas, Rhizobia, and Ruegeria) were found in abundance in the gut contents of the parrotfish species Sc. trispinosus and Sp. axillare. These parrotfishes could aid coral health by disseminating such beneficial bacteria across the reef. Meanwhile, Kyphosus sp. predominantly had Pirellulaceae and Rhodobacteraceae. Four fish species had a diet composed of turf components (filamentous Cyanobacteria) and brown algae (Dictyopteris). They also had similar isotopic niches, suggesting they shared food sources. A significant difference was observed between the isotopic signature of fish muscular gut tissue and gut contents, pointing to the role that host genetics and gut microbes play in differentiating fish tissues.</p>","PeriodicalId":18708,"journal":{"name":"Microbial Ecology","volume":"87 1","pages":"110"},"PeriodicalIF":3.3,"publicationDate":"2024-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11365853/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142109571","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mating Assay: Plating Below a Cell Density Threshold is Required for Unbiased Estimation of Plasmid Conjugation Frequency of RP4 Transfer Between E. coli Strains. 交配试验:大肠杆菌菌株间 RP4 转移的质粒共轭频率的无偏估计需要低于细胞密度阈值的培养。
IF 3.3 3区 生物学
Microbial Ecology Pub Date : 2024-08-28 DOI: 10.1007/s00248-024-02427-7
Zhiming He, Barth F Smets, Arnaud Dechesne
{"title":"Mating Assay: Plating Below a Cell Density Threshold is Required for Unbiased Estimation of Plasmid Conjugation Frequency of RP4 Transfer Between E. coli Strains.","authors":"Zhiming He, Barth F Smets, Arnaud Dechesne","doi":"10.1007/s00248-024-02427-7","DOIUrl":"10.1007/s00248-024-02427-7","url":null,"abstract":"<p><p>Mating assays are common laboratory experiments for measuring the conjugation frequency, i.e. efficiency at which a plasmid transfers from a population of donor cells to a population of recipient cells. Selective plating remains a widely used quantification method to enumerate transconjugants at the end of such assays. However, conjugation frequencies may be inaccurately estimated because plasmid transfer can occur on transconjugant-selective plates rather than only during the intended mating duration. We investigated the influence of cell density on this phenomenon. We conducted mating experiments with IncPα plasmid RP4 harbored in Escherichia coli at a fixed cell density and mating conditions, inoculated a serial dilution of the mating mixture on transconjugant-selective plates or in transconjugant-selective broth, and compared the results to a model of cell-to-cell distance distribution. Our findings suggest that irrespective of the mating mode (liquid vs solid), the enumeration of transconjugants becomes significantly biased if the plated cell density exceeds 28 Colony Forming Unit (CFU)/mm<sup>2</sup> (or 1.68•10<sup>5</sup> CFU/standard 9 cm Petri dish). This threshold is determined with a 95% confidence interval of ± 4 CFU/mm<sup>2</sup> (± 2.46•10<sup>4</sup> CFU/standard 9 cm Petri dish). Liquid mating assays were more sensitive to this bias because the conjugation frequency of RP4 is several orders of magnitude lower in suspension compared to surface mating. Therefore, if selective plating is used, we recommend to plate at this density threshold and that negative controls are performed where donors and recipients are briefly mixed before plating at the same dilutions as for the actual mating assay. As an alternative, a liquid enumeration method can be utilized to increase the signal-to-noise ratio and allow for more accurate enumeration of transconjugants.</p>","PeriodicalId":18708,"journal":{"name":"Microbial Ecology","volume":"87 1","pages":"109"},"PeriodicalIF":3.3,"publicationDate":"2024-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11358341/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142093539","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Implications of Domestication in Theobroma cacao L. Seed-Borne Microbial Endophytes Diversity. 可可豆驯化对种子微生物内生菌多样性的影响。
IF 3.3 3区 生物学
Microbial Ecology Pub Date : 2024-08-28 DOI: 10.1007/s00248-024-02409-9
Deisy Lisseth Toloza-Moreno, Roxana Yockteng, José Ives Pérez-Zuñiga, Cristian Salinas-Castillo, Alejandro Caro-Quintero
{"title":"Implications of Domestication in Theobroma cacao L. Seed-Borne Microbial Endophytes Diversity.","authors":"Deisy Lisseth Toloza-Moreno, Roxana Yockteng, José Ives Pérez-Zuñiga, Cristian Salinas-Castillo, Alejandro Caro-Quintero","doi":"10.1007/s00248-024-02409-9","DOIUrl":"10.1007/s00248-024-02409-9","url":null,"abstract":"<p><p>The study of plant-microbe interactions is a rapidly growing research field, with increasing attention to the role of seed-borne microbial endophytes in protecting the plant during its development from abiotic and biotic stresses. Recent evidence suggests that seed microbiota is crucial in establishing the plant microbial community, affecting its composition and structure, and influencing plant physiology and ecology. For Theobroma cacao L., the diversity and composition of vertically transmitted microbes have yet to be addressed in detail. We explored the composition and diversity of seed-borne endophytes in cacao pods of commercial genotypes (ICS95, IMC67), recently liberated genotypes from AGROSAVIA (TCS01, TCS19), and landraces from Tumaco (Colombia) (AC9, ROS1, ROS2), to evaluate microbial vertical transmission and establishment in various tissues during plant development. We observed a higher abundance of Pseudomonas and Pantoea genera in the landraces and AGROSAVIA genotypes, while the commercial genotypes presented a higher number of bacteria species but in low abundance. In addition, all the genotypes and plant tissues showed a high percentage of fungi of the genus Penicillium. These results indicate that domestication in cacao has increased bacterial endophyte diversity but has reduced their abundance. We isolated some of these seed-borne endophytes to evaluate their potential as growth promoters and found that Bacillus, Pantoea, and Pseudomonas strains presented high production of indole acetic acid and ACC deaminase activity. Our results suggest that cacao domestication could lead to the loss of essential bacteria for seedling establishment and development. This study improves our understanding of the relationship and interaction between perennial plants and seed-borne microbiota.</p>","PeriodicalId":18708,"journal":{"name":"Microbial Ecology","volume":"87 1","pages":"108"},"PeriodicalIF":3.3,"publicationDate":"2024-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11358227/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142080888","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring the Microbial Diversity and Composition of Three Cigar Product Categories. 探索三类雪茄产品的微生物多样性和组成。
IF 3.3 3区 生物学
Microbial Ecology Pub Date : 2024-08-20 DOI: 10.1007/s00248-024-02425-9
Sanjay Joshi, Kent Pham, Luke Moe, Ruth McNees
{"title":"Exploring the Microbial Diversity and Composition of Three Cigar Product Categories.","authors":"Sanjay Joshi, Kent Pham, Luke Moe, Ruth McNees","doi":"10.1007/s00248-024-02425-9","DOIUrl":"10.1007/s00248-024-02425-9","url":null,"abstract":"<p><p>Cigars and cigarillos are emerging as popular tobacco alternatives to cigarettes. However, these products may be equally harmful to human health than cigarettes and are associated with similar adverse health effects. We used 16S rRNA gene amplicon sequencing to extensively characterize the microbial diversity and investigate differences in microbial composition across 23 different products representing three different cigar product categories: filtered cigar, cigarillo, and large cigar. High throughput sequencing of the V4 hypervariable region of the 16 s rRNA gene revealed 2124 Operational Taxonomic Units (OTUs). Our findings showed that the three categories of cigars differed significantly in observed richness and Shannon diversity, with filtered cigars exhibiting lower diversity compared to large cigars and cigarillos. We also found a shared and unique microbiota among different product types. Firmicutes was the most abundant phylum in all product categories, followed by Actinobacteria. Among the 16 genera shared across all product types were Bacillus, Staphylococcus, Pseudomonas, and Pantoea. Nine genera were exclusively shared by large cigars and cigarillos and an additional thirteen genera were exclusive to filtered cigars. Analysis of individual cigar products showed consistent microbial composition across replicates for most large cigars and cigarillos while filtered cigars showed more inter-product variability. These findings provide important insights into the microbial diversity of the different cigar product types.</p>","PeriodicalId":18708,"journal":{"name":"Microbial Ecology","volume":"87 1","pages":"107"},"PeriodicalIF":3.3,"publicationDate":"2024-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11335948/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142004806","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Nitrogen Fixation and Microbial Communities Associated with Decomposing Seagrass Leaves in Temperate Coastal Waters. 温带沿海水域与海草叶片分解有关的固氮作用和微生物群落。
IF 3.3 3区 生物学
Microbial Ecology Pub Date : 2024-08-14 DOI: 10.1007/s00248-024-02424-w
Vasiliki Papazachariou, Victor Fernández-Juárez, Laura Wegener Parfrey, Lasse Riemann
{"title":"Nitrogen Fixation and Microbial Communities Associated with Decomposing Seagrass Leaves in Temperate Coastal Waters.","authors":"Vasiliki Papazachariou, Victor Fernández-Juárez, Laura Wegener Parfrey, Lasse Riemann","doi":"10.1007/s00248-024-02424-w","DOIUrl":"10.1007/s00248-024-02424-w","url":null,"abstract":"<p><p>Seagrass meadows play pivotal roles in coastal biochemical cycles, with nitrogen fixation being a well-established process associated with living seagrass. Here, we tested the hypothesis that nitrogen fixation is also associated with seagrass debris in Danish coastal waters. We conducted a 52-day in situ experiment to investigate nitrogen fixation (proxied by acetylene reduction) and dynamics of the microbial community (16S rRNA gene amplicon sequencing) and the nitrogen fixing community (nifH DNA/RNA amplicon sequencing) associated with decomposing Zostera marina leaves. The leaves harboured distinct microbial communities, including distinct nitrogen fixers, relative to the surrounding seawater and sediment throughout the experiment. Nitrogen fixation rates were measurable on most days, but highest on days 3 (dark, 334.8 nmol N g<sup>-1</sup> dw h<sup>-1</sup>) and 15 (light, 194.6 nmol N g<sup>-1</sup> dw h<sup>-1</sup>). Nitrogen fixation rates were not correlated with the concentration of inorganic nutrients in the surrounding seawater or with carbon:nitrogen ratios in the leaves. The composition of nitrogen fixers shifted from cyanobacterial Sphaerospermopsis to heterotrophic genera like Desulfopila over the decomposition period. On the days with highest fixation, nifH RNA gene transcripts were mainly accounted for by cyanobacteria, in particular by Sphaerospermopsis and an unknown taxon (order Nostocales), alongside Proteobacteria. Our study shows that seagrass debris in temperate coastal waters harbours substantial nitrogen fixation carried out by cyanobacteria and heterotrophic bacteria that are distinct relative to the surrounding seawater and sediments. This suggests that seagrass debris constitutes a selective environment where degradation is affected by the import of nitrogen via nitrogen fixation.</p>","PeriodicalId":18708,"journal":{"name":"Microbial Ecology","volume":"87 1","pages":"106"},"PeriodicalIF":3.3,"publicationDate":"2024-08-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11324715/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141976095","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Microbial Succession on Microplastics in Wastewater Treatment Plants: Exploring the Complexities of Microplastic-Microbiome Interactions. 污水处理厂中微塑料上的微生物演替:探索微塑料与微生物组相互作用的复杂性。
IF 3.3 3区 生物学
Microbial Ecology Pub Date : 2024-08-12 DOI: 10.1007/s00248-024-02422-y
Klaudia Kwiatkowska, Paulina Ormaniec
{"title":"Microbial Succession on Microplastics in Wastewater Treatment Plants: Exploring the Complexities of Microplastic-Microbiome Interactions.","authors":"Klaudia Kwiatkowska, Paulina Ormaniec","doi":"10.1007/s00248-024-02422-y","DOIUrl":"10.1007/s00248-024-02422-y","url":null,"abstract":"<p><p>Despite some effectiveness of wastewater treatment processes, microplastics accumulate in sewage sludge and their further use may contribute to the release of plastic microplastics into the environment. There is an urgent need to reduce the amount of microplastics in sewage sludge. Plastic particles serve as solid substrates for various microorganisms, promoting the formation of microbial biofilms with different metabolic activities. The biofilm environment associated with microplastics will determine the efficiency of treatment processes, especially biological methods, and the mechanisms of organic compound conversion. A significant source of microplastics is the land application of sewage sludge from wastewater treatment plants. The detrimental impact of microplastics affects soil enzymatic activity, soil microorganisms, flora, fauna, and plant production. This review article summarizes the development of research related to microplastics and discusses the issue of microplastic introduction from sewage sludge. Given that microplastics can contain complex composite polymers and form a plastisphere, further research is needed to understand their potential environmental impact, pathogenicity, and the characteristics of biofilms in wastewater treatment systems. The article also discusses the physicochemical properties of microplastics in wastewater treatment plants and their role in biofilm formation. Then, the article explained the impact of these properties on the possibility of the formation of biofilms on their surface due to the peculiar structure of microorganisms and also characterized what factors enable the formation of specific plastisphere in wastewater treatment plants. It highlights the urgent need to understand the basic information about microplastics to assess environmental toxicity more rationally, enabling better pollution control and the development of regulatory standards to manage microplastics entering the environment.</p>","PeriodicalId":18708,"journal":{"name":"Microbial Ecology","volume":"87 1","pages":"105"},"PeriodicalIF":3.3,"publicationDate":"2024-08-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11319512/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141917119","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bacteria-Like Gaiella Accelerate Soil Carbon Loss by Decomposing Organic Matter of Grazing Soils in Alpine Meadows on the Qinghai-Tibet Plateau. 类似盖拉的细菌通过分解青藏高原高山草甸放牧土壤的有机物加速土壤碳流失
IF 3.3 3区 生物学
Microbial Ecology Pub Date : 2024-08-07 DOI: 10.1007/s00248-024-02414-y
Lin Wei, Yalin Wang, Na Li, Na Zhao, Shixiao Xu
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