Magnetic Resonance in Chemistry最新文献

{"title":"Permethylation as a strategy for high-molecular-weight polysaccharide structure analysis by nuclear magnetic resonance—Case study of Xylella fastidiosa extracellular polysaccharide","authors":"Ikenna E. Ndukwe,&nbsp;Ian Black,&nbsp;Claudia A. Castro,&nbsp;Jiri Vlach,&nbsp;Christian Heiss,&nbsp;Caroline Roper,&nbsp;Parastoo Azadi","doi":"10.1002/mrc.5413","DOIUrl":"10.1002/mrc.5413","url":null,"abstract":"<p>Current practices for structural analysis of extremely large-molecular-weight polysaccharides via solution-state nuclear magnetic resonance (NMR) spectroscopy incorporate partial depolymerization protocols that enable polysaccharide solubilization in suitable solvents. Non-specific depolymerization techniques utilized for glycosidic bond cleavage, such as chemical degradation or ultrasonication, potentially generate structural fragments that can complicate complete and accurate characterization of polysaccharide structures. Utilization of appropriate enzymes for polysaccharide degradation, on the other hand, requires prior structural knowledge and optimal enzyme activity conditions that are not available to an analyst working with novel or unknown compounds. Herein, we describe an application of a permethylation strategy that allows the complete dissolution of intact polysaccharides for NMR structural characterization. This approach is utilized for NMR analysis of <i>Xylella fastidiosa</i> extracellular polysaccharide (EPS), which is essential for the virulence of the plant pathogen that affects multiple commercial crops and is responsible for multibillion dollar losses each year.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mrc.5413","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138176530","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Theoretical studies on the local structure and spin Hamiltonian parameters for Cu2+ ions in LiTaO3 crystal","authors":"Yun Chen,&nbsp;Lu Tang,&nbsp;Houdao Cai,&nbsp;Meiyun Zhang,&nbsp;Xunjie Wang,&nbsp;Cuidi Feng,&nbsp;Wenbo Xiao,&nbsp;Huaming Zhang","doi":"10.1002/mrc.5414","DOIUrl":"10.1002/mrc.5414","url":null,"abstract":"<p>The local structure and spin Hamiltonian parameters (SHPs) <i>g</i> factors (<i>g</i>_<i>x</i>, <i>g</i>_<i>y</i>, <i>g</i>_<i>z</i>) and the hyperfine structure constants (<i>A</i>_<i>x</i>, <i>A</i>_<i>y</i>, <i>A</i>_<i>z</i>) for Cu²⁺ doped in the LiTaO₃ crystal are theoretically investigated by the perturbation formulas for a 3d⁹ ion under rhombically elongated octahedral based on the cluster approach. The impurity Cu²⁺ was assumed to occupy the host trigonally-distorted octahedral Li⁺ site and experience the Jahn–Teller (JT) distortion from the host trigonal octahedral [TaO₆]¹⁰⁻ to the impurity rhombically elongated octahedral [CuO₆]¹⁰⁻. Based on the calculations, the impurity-ligand bond lengths parallel and perpendicular to the <i>C</i>₂-axis are found to be <i>R</i>_||(≈ 2.305 Å) and <i>R</i>_⊥ (≈ 2.112 Å) for the studied [CuO₆]¹⁰⁻ cluster, with the planar bond angle θ (≈ 78.2°). Meanwhile, the ground-state wave function for Cu²⁺ center in LiTaO₃ was also obtained. The calculated SHPs based on the above local lattice distortions agree well with the experimental data, and the results are discussed.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-11-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136398087","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Solid-state 35/37Cl NMR detection of chlorine atoms directly bound to paramagnetic cobalt(II) ions in powder samples","authors":"Lukas Bauder,&nbsp;Gang Wu","doi":"10.1002/mrc.5407","DOIUrl":"10.1002/mrc.5407","url":null,"abstract":"<p>We report high-quality solid-state ^35/37Cl NMR spectra for chlorine atoms directly bonded to paramagnetic cobalt(II) ions (high spin <i>S</i> = 3/2) in powered samples of CoCl₂, CoCl₂·2H₂O, CoCl₂·6H₂O, and CoCl₂(terpy) (terpy = 2,2′:6′,2″-terpyridine). Because solid-state ^35/37Cl NMR spectra for paramagnetic cobalt(II) compounds often cover an extremely wide spectral range, they were recorded in this work in the form of variable-offset cumulative spectra. Solid-state ^35/37Cl NMR measurements were performed at three magnetic fields (11.7, 14.1, and 16.5 T) and analysis of data yielded information about ^35/37Cl quadrupole coupling and hyperfine coupling tensors in these paramagnetic cobalt(II) compounds. Experimental ^35/37Cl NMR tensors were found to be in reasonable agreement with quantum chemical calculations based on a periodic DFT method implemented in BAND.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mrc.5407","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72209861","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Can simple ‘molecular’ corrections outperform projector augmented-wave density functional theory in the prediction of 35Cl electric field gradient tensor parameters for chlorine-containing crystalline systems?","authors":"Cory M. Widdifield,&nbsp;Fatemeh Zakeri","doi":"10.1002/mrc.5408","DOIUrl":"10.1002/mrc.5408","url":null,"abstract":"<p>Many-body expansion (MBE) fragment approaches have been applied to accurately compute nuclear magnetic resonance (NMR) parameters in crystalline systems. Recent examples demonstrate that electric field gradient (EFG) tensor parameters can be accurately calculated for ¹⁴N and ¹⁷O. A key additional development is the simple molecular correction (SMC) approach, which uses two one-body fragment (i.e., isolated molecule) calculations to adjust NMR parameter values established using ‘benchmark’ projector augmented-wave (PAW) density functional theory (DFT) values. Here, we apply a SMC using the hybrid PBE0 exchange-correlation (XC) functional to see if this can improve the accuracy of calculated ³⁵Cl EFG tensor parameters. We selected eight organic and two inorganic crystal structures and considered 15 chlorine sites. We find that this SMC improves the accuracy of computed values for both the ³⁵Cl quadrupolar coupling constant (<i>C</i>_Q) and the asymmetry parameter (\u0000<math>\u0000 <msub>\u0000 <mi>η</mi>\u0000 <mi>Q</mi>\u0000 </msub></math>) by approximately 30% compared with benchmark PAW DFT values. We also assessed a SMC that offers local improvements not only in terms of the quality of the XC functional but simultaneously in the quality of the description of relativistic effects <i>via</i> the inclusion of spin–orbit effects. As the inorganic systems considered contain heavy atoms bonded to the chlorine atoms, we find further improvements in the accuracy of calculated ³⁵Cl EFG tensor parameters when both a hybrid functional and spin–orbit effects are included in the SMC. On the contrary, for chlorine-containing organics, the inclusion of spin–orbit relativistic effects using a SMC does not improve the accuracy of computed ³⁵Cl EFG tensor parameters.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mrc.5408","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89718819","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"6aH-Benzo[α]fluorene: NMR evidence of the unexpected product of the reaction of butyryl chloride with 1,2-diphenylacetylene","authors":"Sergey V. Zinchenko,&nbsp;Valentina A. Kobelevskaya,&nbsp;Alexander V. Popov","doi":"10.1002/mrc.5406","DOIUrl":"10.1002/mrc.5406","url":null,"abstract":"<p>The reaction of butyryl chloride with ethynylbenzene in the presence of AlCl₃ afforded a mixture of the Z/E-isomers of 1-chloro-2-phenylhex-1-en-3-one. 1,2-Diphenylethyne under these conditions gave a novel polycarbocycle core, 6a<i>H</i>-benzo[<i>a</i>]fluorene. The chemical structure of 11-chloro-5,6-diphenyl-6a-propyl-6a<i>H</i>-benzo[<i>a</i>]fluorene was established by means of IE-MS, ¹H, ¹³C NMR, COSY, HSQC, HMBC, and 2D INADEQUATE technique.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-11-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"71483236","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The effect of tube quality on externally calibrated quantitative nuclear magnetic resonance analysis: How bad can it be?","authors":"Jessica L. Ochoa,&nbsp;Stephan Germann,&nbsp;Breanna Conklin,&nbsp;Kenji Kurita,&nbsp;David J. Russell,&nbsp;Cassie Yang,&nbsp;José G. Napolitano","doi":"10.1002/mrc.5404","DOIUrl":"10.1002/mrc.5404","url":null,"abstract":"<p>Externally calibrated quantitative nuclear magnetic resonance (NMR) approaches offer practical means to simultaneously evaluate chemical identity and content without the addition of calibrants to the test sample. Despite continuous advances in external calibration over the last few decades, adoption of these approaches has been slower than expected. Variations in NMR tube geometry are a commonly overlooked factor that can have a substantial effect on externally calibrated quantitation methods. In this report, we investigate the extent to which tube-to-tube volume variability can affect quantitative NMR outcomes. The results highlight the importance of considering tube quality during the development stages of externally calibrated quantitative methods. In addition, we propose a simple, yet effective volume correction strategy using the residual protonated solvent signal that, based on experiments with mixed NMR tubes of varying quality, alleviates the effect of tube-to-tube variability.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"71483237","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Challenges and opportunities in elucidating the structures of biofilm exopolysaccharides: A case study of the Pseudomonas aeruginosa exopolysaccharide called Pel","authors":"Kristen Amyx-Sherer,&nbsp;Courtney Reichhardt","doi":"10.1002/mrc.5405","DOIUrl":"10.1002/mrc.5405","url":null,"abstract":"<p>Biofilm formation protects bacteria from antibiotic treatment and host immune responses, making biofilm infections difficult to treat. Within biofilms, bacterial cells are entangled in a self-produced extracellular matrix that typically includes exopolysaccharides. Molecular-level descriptions of biofilm matrix components, especially exopolysaccharides, have been challenging to attain due to their complex nature and lack of solubility and crystallinity. Solid-state nuclear magnetic resonance (NMR) has emerged as a key tool to determine the structure of biofilm matrix exopolysaccharides without degradative sample preparation. In this review, we discuss challenges of studying biofilm matrix exopolysaccharides and opportunities to develop solid-state NMR approaches to study these generally intractable materials. We specifically highlight investigations of the exopolysaccharide called Pel made by the opportunistic pathogen, <i>Pseudomonas aeruginosa</i>. We provide a roadmap for determining exopolysaccharide structure and discuss future opportunities to study such systems using solid-state NMR. The strategies discussed for elucidating biofilm exopolysaccharide structure should be broadly applicable to studying the structures of other glycans.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-11-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"71424853","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Simulation of oriented NMR spectra: Combining molecular dynamics and chemical shift tensor calculations","authors":"Ulrich Sternberg,&nbsp;Raiker Witter","doi":"10.1002/mrc.5403","DOIUrl":"10.1002/mrc.5403","url":null,"abstract":"<p>Solid state NMR is widely used to study the orientation and other structural features of proteins and peptides in lipid bilayers. Using data obtained by PISEMA (Polarization Inversion Spin Exchange at Magic Angle) experiments, periodic spectral patterns arise from well-aligned α-helical molecules. Significant problems in the interpretation of PISEMA spectra may arise for systems that do not form perfectly defined secondary structures, like α-helices, or the signal pattern is disturbed by molecular motion. Here, we present a new method that combines molecular dynamics simulation with tensorial orientational constraints (MDOC) and chemical shift tensor calculations for the simulation and interpretation of PISEMA-like spectra. The calculations include the spectra arising from non α-helical molecules and molecules with non-uniform intrinsic mobility. In a first step, dipolar or quadrupolar interaction tensors drive molecular rotations and reorientations to obtain the proper mean values as observed in corresponding NMR experiments. In a second step, the coordinate snapshots of the MDOC simulations are geometry optimized with the isotropic ¹⁵N chemical shifts as constraints using Bond Polarization Theory (BPT) to provide reliable ¹⁵N CS tensor data. The averaged dipolar ¹H-¹⁵N couplings and the <i>δ</i>_<i>zz</i> tensor components can then be combined to simulate PISEMA patterns. We apply this method to the ß-helical peptide gramicidin A (gA) and demonstrate that this method enables the assignment of most PISEMA resonances. In addition, MDOC simulations provide local order parameters for the calculated sites. These local order parameters reveal large differences in backbone mobility between L- and D-amino acids of gA.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mrc.5403","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54229805","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Molecular precursors to produce para-hydrogen enhanced metabolites at any field","authors":"Anil P. Jagtap,&nbsp;Salvatore Mamone,&nbsp;Stefan Glöggler","doi":"10.1002/mrc.5402","DOIUrl":"10.1002/mrc.5402","url":null,"abstract":"<p>Enhancing magnetic resonance signal via hyperpolarization techniques enables the real-time detection of metabolic transformations even in vivo. The use of para-hydrogen to enhance ¹³C-enriched metabolites has opened a rapid pathway for the production of hyperpolarized metabolites, which usually requires specialized equipment. Metabolite precursors that can be hyperpolarized and converted into metabolites at any given field would open up opportunities for many labs to make use of this technology because already existing hardware could be used. We report here on the complete synthesis and hyperpolarization of suitable precursor molecules of the side-arm hydrogenation approach. The better accessibility to such side-arms promises that the para-hydrogen approach can be implemented in every lab with existing two channel NMR spectrometers for ¹H and ¹³C independent of the magnetic field.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-10-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/epdf/10.1002/mrc.5402","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41204557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Low-field, not low quality: 1D simplification, selective detection, and heteronuclear 2D experiments for improving low-field NMR spectroscopy of environmental and biological samples","authors":"Katelyn Downey,&nbsp;Wolfgang Bermel,&nbsp;Ronald Soong,&nbsp;Daniel H. Lysak,&nbsp;Kiera Ronda,&nbsp;Katrina Steiner,&nbsp;Peter M. Costa,&nbsp;William W. Wolff,&nbsp;Venita Decker,&nbsp;Falko Busse,&nbsp;Benjamin Goerling,&nbsp;Agnes Haber,&nbsp;Myrna J. Simpson,&nbsp;Andre J. Simpson","doi":"10.1002/mrc.5401","DOIUrl":"10.1002/mrc.5401","url":null,"abstract":"<p>Understanding environmental change is challenging and requires molecular-level tools to explain the physicochemical phenomena behind complex processes. Nuclear magnetic resonance (NMR) spectroscopy is a key tool that provides information on both molecular structures and interactions but is underutilized in environmental research because standard “high-field” NMR is financially and physically inaccessible for many and can be overwhelming to those outside of disciplines that routinely use NMR. “Low-field” NMR is an accessible alternative but has reduced sensitivity and increased spectral overlap, which is especially problematic for natural, heterogeneous samples. Therefore, the goal of this study is to investigate and apply innovative experiments that could minimize these challenges and improve low-field NMR analysis of environmental and biological samples. Spectral simplification (JRES, PSYCHE, singlet-only, multiple quantum filters), selective detection (GEMSTONE, DREAMTIME), and heteronuclear (reverse and CH₃/CH₂/CH-only HSQCs) NMR experiments are tested on samples of increasing complexity (amino acids, spruce resin, and intact water fleas) at-high field (500 MHz) and at low-field (80 MHz). A novel experiment called Doubly Selective HSQC is also introduced, wherein ¹H signals are selectively detected based on the ¹H and ¹³C chemical shifts of ¹H–¹³C J-coupled pairs. The most promising approaches identified are the selective techniques (namely for monitoring), and the reverse and CH₃-only HSQCs. Findings ultimately demonstrate that low-field NMR holds great potential for biological and environmental research. The multitude of NMR experiments available makes NMR tailorable to nearly any research need, and low-field NMR is therefore anticipated to become a valuable and widely used analytical tool moving forward.</p>","PeriodicalId":18142,"journal":{"name":"Magnetic Resonance in Chemistry","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2023-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41100154","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}