{"title":"A Flourishing Planktonic Microbial Community in an Interglacial Offshore Environment: Silicified Microfossils From the Cryogenian Datangpo Formation, South China","authors":"Qing Ouyang, Chuanming Zhou, Xianguo Lang, Yuangao Qu, Hongyi Shi, Yunpeng Sun, Zhe Chen","doi":"10.1111/gbi.70034","DOIUrl":"https://doi.org/10.1111/gbi.70034","url":null,"abstract":"<div>\u0000 \u0000 <p>The Cryogenian global glaciations profoundly shaped the evolution of Earth's ecosystem. An active Cryogenian biosphere accompanied by key evolutionary innovations has been indicated by geochemical and phylogenetic studies, although fossil records from Cryogenian strata are limited. In this study, we report a silicified microfossil assemblage from the Cryogenian Datangpo Formation in an interglacial offshore setting of the Yangtze block, South China. The Datangpo assemblage majorly comprises coccoidal microfossils classified into three morphological types, with minor components of fragmented filamentous forms. Morphological and structural observations combined with Raman spectroscopic analysis indicate that this microfossil assemblage may represent a planktonic microbial community dominated by cyanobacteria. The exceptionally silicified taphonomic window in the Datangpo microfossil assemblage provides a snapshot of primary producers in an offshore environment between the two Cryogenian global glaciations.</p>\u0000 </div>","PeriodicalId":173,"journal":{"name":"Geobiology","volume":"23 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145146668","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
GeobiologyPub Date : 2025-09-19DOI: 10.1111/gbi.70032
Brian Beaty, William J. Foster, Valentin Zuchuat, Spencer R. Moller, Stella Z. Buchwald, Hannah Brooks, Sofia Rauzi, Terry Isson, Sverre Planke, Francisco J. Rodríguez-Tovar, Kim Senger, Noah Planavsky, Lidya Tarhan
{"title":"Bioturbation Shapes Marine Biogeochemical Cycling Following the End-Permian Mass Extinction in Northern Pangea","authors":"Brian Beaty, William J. Foster, Valentin Zuchuat, Spencer R. Moller, Stella Z. Buchwald, Hannah Brooks, Sofia Rauzi, Terry Isson, Sverre Planke, Francisco J. Rodríguez-Tovar, Kim Senger, Noah Planavsky, Lidya Tarhan","doi":"10.1111/gbi.70032","DOIUrl":"10.1111/gbi.70032","url":null,"abstract":"<div>\u0000 \u0000 <p>During the end-Permian mass extinction, a global decline in seafloor sediment mixing and burrowing (bioturbation) provides critical evidence for the collapse of marine ecosystems, likely triggered by rapid ocean warming and deoxygenation. However, the decline and subsequent recovery of bioturbation after the extinction event may not only have been a symptom of environmental change but also a driver, influencing nutrient exchange and reductant burial across the sediment–water interface and thus water column oxygen availability and seafloor habitability more broadly. Here we test this hypothesis through combined analyses of bioturbation and sedimentary geochemistry, focusing on marine siliciclastic records of the Permian–Triassic transition from Svalbard. We find that total organic carbon, total sulfur, and organic phosphorus decrease with increasing bioturbation intensity, whereas inorganic reactive phosphorus phases (authigenic and iron oxide-bound phosphorus) increase. These differences are most strongly associated with biodiffusion (particle mixing) rather than bioirrigation (solute exchange). Our findings suggest that bioturbation primarily influenced sediment chemistry by enhancing organic matter oxidation, in contrast to some modern settings where downward mixing may promote organic matter preservation within the anoxic portion of seafloor sediments. The early return of shallow-tier bioturbators in this region < 200 kyr after the extinction event likely promoted a rapid restoration of efficient carbon and sulfur cycling within benthic ecosystems. In contrast, efficient phosphorus burial via sink-switching may not have resumed until deeper-tier bioturbators achieved pre-extinction levels of sediment mixing > 1 Myr after the mass extinction.</p>\u0000 </div>","PeriodicalId":173,"journal":{"name":"Geobiology","volume":"23 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-09-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145084717","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
GeobiologyPub Date : 2025-09-18DOI: 10.1111/gbi.70033
Diana Velazquez, Nathan D. Sheldon, Michael T. Hren, Jenan J. Kharbush
{"title":"Oxygenation and Alkalinity Drive the Lacustrine Nitrogen Isotope Record Throughout the Past 3.2 Billion Years","authors":"Diana Velazquez, Nathan D. Sheldon, Michael T. Hren, Jenan J. Kharbush","doi":"10.1111/gbi.70033","DOIUrl":"10.1111/gbi.70033","url":null,"abstract":"<p>The widespread, stepwise oxygenation of Earth's atmosphere in the Precambrian led to a transformation of the global carbon (C) and nitrogen (N) cycles. While the temporal evolution of these nutrient cycles has been studied extensively in marine environments, lacustrine environments are understudied. This study first examines how water column oxygen conditions impact sedimentary carbon (δ<sup>13</sup>C<sub>org</sub>) and nitrogen (δ<sup>15</sup>N) isotope signals in modern lakes. Subsequently, we use these patterns to interpret past changes in the geological record of lacustrine δ<sup>15</sup>N during atmospheric oxygenation. The compiled modern lake sediment dataset reveals average (± standard deviation) δ<sup>15</sup>N values of +2.9‰ ± 3.2‰ and δ<sup>13</sup>C<sub>org</sub> values of −25.99‰ ± 3.77‰, as well as thresholds in δ<sup>13</sup>C<sub>org</sub> for oxic versus anoxic conditions, and in δ<sup>15</sup>N for circumneutral versus alkaline pH conditions. In contrast to the stepwise oxygenation of the atmosphere, the lacustrine δ<sup>15</sup>N record does not directly reflect major oxygenation events, but instead increases gradually in response to the evolution of new aerobic N metabolic pathways, with a notable shift in the Phanerozoic. While we found that intrasite variability at a single modern anoxic lake is expected to remain within ~5‰ for δ<sup>15</sup>N, alkaline lakes in both the ancient and modern deviate from this range. We observe δ<sup>15</sup>N > +10‰ for approximately half of total ancient alkaline lake sediments and some modern lake sediments. This is consistent with previous applications of enriched δ<sup>15</sup>N as a basicity proxy. The lacustrine δ<sup>15</sup>N record aligns well with the evolution of microbial metabolic pathways in addition to providing information pertaining to environmental conditions of the depositional setting.</p>","PeriodicalId":173,"journal":{"name":"Geobiology","volume":"23 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12444620/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145079326","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
GeobiologyPub Date : 2025-09-18DOI: 10.1111/gbi.70030
Madison Tripp, Jasmina Wiemann, Luke Brosnan, William D. A. Rickard, Vivi Vajda, Michael Ernst Böttcher, Paul F. Greenwood, Kliti Grice
{"title":"Mineralization Controls Informative Biomarker Preservation Associated With Soft Part Fossilization in Deep Time","authors":"Madison Tripp, Jasmina Wiemann, Luke Brosnan, William D. A. Rickard, Vivi Vajda, Michael Ernst Böttcher, Paul F. Greenwood, Kliti Grice","doi":"10.1111/gbi.70030","DOIUrl":"10.1111/gbi.70030","url":null,"abstract":"<p>Diagenetically mineralized fossil tissues represent invaluable paleobiological evidence of past life. Lipid biomarkers may be identified alongside fossils, yet the relationship between localized, diagenetic mineral precipitation, and lipid preservation remains underexplored. Coprolites (fossilized feces) attract a unique diversity of early diagenetic minerals including carbonates and phosphates, within individual samples, mediating molecular preservation of soluble lipid biomarkers alongside exceptional morphological preservation. Analysis of a well-preserved coprolite from the Carboniferous (307 ± 0.1 Ma) Mazon Creek assemblage, USA via time of flight-secondary ion mass spectrometry (ToF-SIMS) spatial compound mapping demonstrated the association of 5α,14α,17α(H) 20<i>R</i> cholestane, a C<sub>27</sub> dietary sterane, with iron carbonate (and some pyrite) rather than phosphate minerals. Furthermore, Raman spectroscopic fingerprinting of a suite of organic-rich fossils spanning a number of biological species and preserved across the Mazon Creek site and other depositional settings was utilized to explore whether the localized preservation of steroids in carbonate phases represents a <i>lagerstätten</i>-specific or generalizable pattern. Our spectroscopic analyses demonstrate a significant positive correlation between signatures of lipid biomarkers and carbonates rather than phosphates across all soft-part samples at the Mazon Creek site and throughout Phanerozoic time and space. Early diagenetic carbonate measurably immobilizes otherwise labile lipid biomarkers and shields them against diagenetic stressors. Localized preservation identifies carbonate phases as a preferential resource for lipid-based biological information and reveals organomineral associations as a new frontier in understanding the survival of molecules in deep time.</p>","PeriodicalId":173,"journal":{"name":"Geobiology","volume":"23 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/gbi.70030","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145084697","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
GeobiologyPub Date : 2025-09-09DOI: 10.1111/gbi.70031
Simone Bernardini, Anas Abbassi, Paola Cipollari, Giancarlo Della Ventura, Cesareo Saiz-Jimenez, Enrico Mugnaioli, Luigi Jovane, Armida Sodo, Fabio Bellatreccia, Mohamed N. Zaghloul, Domenico Cosentino
{"title":"The Tubotomaculum Enigma and the Rise of Benthic Life During the Opening of the Western Mediterranean Basin","authors":"Simone Bernardini, Anas Abbassi, Paola Cipollari, Giancarlo Della Ventura, Cesareo Saiz-Jimenez, Enrico Mugnaioli, Luigi Jovane, Armida Sodo, Fabio Bellatreccia, Mohamed N. Zaghloul, Domenico Cosentino","doi":"10.1111/gbi.70031","DOIUrl":"https://doi.org/10.1111/gbi.70031","url":null,"abstract":"<p>Large-scale geological processes shape microbial habitats and drive the evolution of life on Earth. During the Oligocene, convergence between Africa and Europe led to the opening of the Western Mediterranean Basin, a deep-ocean system characterized by fluid venting, oxygen depletion, and the absence of benthic fauna. In this extreme, inhospitable seafloor environment, fusiform objects known as <i>Tubotomaculum</i> formed, whose origin has long remained controversial. We show that these enigmatic mineralizations consist of nanosized, poorly crystalline, phosphorus-rich Mn-Fe compounds produced through microbial mediation. They preserve carbonaceous material together with morphological, chemical, and mineralogical biosignatures, including high Mn oxidation state (3.9 ± 0.15), cell envelopes, extracellular polymeric substances (EPS), cell-EPS partitioning of redox-sensitive Mn and Fe, cluster-assembled microbial cells, microbialite-like and branching structures, and channel networks for nutrient transport. Geochemical signatures indicate precipitation under suboxic to anoxic, non-sulfidic (post-oxic) conditions from mixed seawater–hydrothermal fluids, with exposure on the seafloor prior to burial. The fusiform architecture of these self-organized microbial populations suggests shaping by nutrient-rich bottom currents associated with venting activity. This study provides a detailed glimpse into initial benthic colonization of the nascent Western Mediterranean Basin and establishes <i>Tubotomaculum</i> as a model for investigating biomineralization and microbial adaptation in extreme environments, with implications for the search for life beyond Earth.</p>","PeriodicalId":173,"journal":{"name":"Geobiology","volume":"23 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/gbi.70031","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145012653","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
GeobiologyPub Date : 2025-09-01DOI: 10.1111/gbi.70035
Yang Li, Xuan Qiu, Deng Liu, Hongmei Wang, Xiaoyan Liu, Weiqi Wang, Ting Chen, Haochao Zhangsun, Xinyu Cai, Shengping Jin, Guangquan Yu
{"title":"Unlocking the Secrets of Saline Lakes: How Environmental and Microbial Interactions Shape Protodolomite Formation.","authors":"Yang Li, Xuan Qiu, Deng Liu, Hongmei Wang, Xiaoyan Liu, Weiqi Wang, Ting Chen, Haochao Zhangsun, Xinyu Cai, Shengping Jin, Guangquan Yu","doi":"10.1111/gbi.70035","DOIUrl":"https://doi.org/10.1111/gbi.70035","url":null,"abstract":"<p><p>Protodolomite formation in saline lakes remains enigmatic, despite favorable conditions for dolomite precipitation. To unravel this mystery, sediment samples were collected from two saline lakes in northeastern Inner Mongolia: Jibuhulangtu Nuur (JBHLT) and Dabusan Nuur (DBS). These samples were subjected to comprehensive analysis, including mineral composition detection, measurement of physicochemical variables, analysis of extracellular polymeric substances (EPS), and 16S rRNA sequencing. Results showed that protodolomite was exclusively observed in JBHLT, even though both lakes were supersaturated with respect to dolomite. Microbial communities in JBHLT were dominated by Gammaproteobacteria and Desulfuromonadia. Polysaccharide in EPS extracted from sediments was significantly enriched in JBHLT and positively correlated with microbial alpha diversity. pH was found to be the main factor significantly impacting microbial community composition, diversity, and functions. In DBS, increased pH led to the dominance of Halanaerobiaeota, while decreased microbial diversity and polysaccharide contents. The interplay of pH, microbial community structure, and sediment EPS content concurrently impacts protodolomite formation. Our findings highlight the interaction between environmental conditions and microbial communities and their consequence in terms of protodolomite mineralization.</p>","PeriodicalId":173,"journal":{"name":"Geobiology","volume":"23 5","pages":"e70035"},"PeriodicalIF":3.4,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145205014","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
GeobiologyPub Date : 2025-08-19DOI: 10.1111/gbi.70029
Christopher Mulligan, David A. Gold
{"title":"A Reassessment of the Coprostane Biomarker in the Ediacaran With Implications for Dickinsonia","authors":"Christopher Mulligan, David A. Gold","doi":"10.1111/gbi.70029","DOIUrl":"https://doi.org/10.1111/gbi.70029","url":null,"abstract":"<p>The discovery of cholestane in animal fossils from the Ediacaran (571–541 million years ago) has generated much excitement, but it is not the only interesting biomarker recovered. Coprostane, a geologically stable form of coprostanol, has also been found in Ediacaran rocks. This is surprising, since coprostanol is typically used in modern settings as an environmental biomarker for humans and other mammals, who produce the compound with help from bacteria in their gut. The prevailing hypothesis is that an abundance of coprostane in some Ediacaran fossils—particularly <i>Dickinsonia</i>—represents the degradation of the organism's cholesterol by bacteria in the microbial mat, comparable to what is seen in modern vertebrate corpses as they decompose. However, this hypothesis assumes coprostanol-producing bacteria were absent in the guts of Ediacaran organisms, and to date no one has tested whether such bacteria exist in modern invertebrates. In this study, we assembled 115 metagenomes to look for evidence of coprostanol-producing enzymes in invertebrate microbiomes. Ultimately, we did not find any evidence for the enzyme in any invertebrate microbiomes, supporting the hypothesis that coprostane is not a gut biomarker for Ediacaran animals. However, a reassessment of coprostane/cholestane ratios shows <i>Dickinsonia</i> was unique in coprostanol enrichment, with ratio levels comparable to waste polluted marine waters and modern vertebrate feces. While we cannot rule out the possibility of contamination, we prefer a novel interpretation of the coprostane signature in dickinsoniomorph fossils, where the elevated level of coprostanol comes from digestion of the microbial mat and concentration of the biologically inert compound. If correct, the elevated coprostanol signal provides new insights into the feeding strategy of these enigmatic animals.</p>","PeriodicalId":173,"journal":{"name":"Geobiology","volume":"23 4","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/gbi.70029","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144869603","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
GeobiologyPub Date : 2025-08-06DOI: 10.1111/gbi.70028
Jean N. R. Clemente, Haifeng Fan, Chadlin M. Ostrander, Hongjie Zhang, Hanjie Wen, Erik A. Sperling, Sune G. Nielsen
{"title":"Thallium Isotopes Suggest the Global Deep Ocean Did Not Approach Modern Oxygenation During Cambrian Age 3 Metazoan Radiation","authors":"Jean N. R. Clemente, Haifeng Fan, Chadlin M. Ostrander, Hongjie Zhang, Hanjie Wen, Erik A. Sperling, Sune G. Nielsen","doi":"10.1111/gbi.70028","DOIUrl":"https://doi.org/10.1111/gbi.70028","url":null,"abstract":"<div>\u0000 \u0000 <p>The geologically rapid appearance of most extant animal groups in the Cambrian fossil record is often linked to enhanced ocean oxygenation. However, conflicting reconstructions of the Cambrian redox landscape make it difficult to determine the extent of ocean oxygenation during this significant biotic event, particularly regarding the redox state of the global deep ocean. In this study, we present authigenic thallium isotope compositions (ε<sup>205</sup>Tl<sub>auth</sub>) for two shale sequences from South China (Qingjiang and Weng'an) that span the Cambrian Stage 2–3 boundary to the appearance of the Qingjiang biota, approximately 521–518 million years ago (Ma), a timeframe that chronicles a particularly rapid interval of metazoan diversification and radiation in the broader Cambrian explosion. If this event occurred amid modern-like extents of global ocean oxygenation, we would expect a significant increase in the global extent of seafloor Mn-oxide burial to drive lower ε<sup>205</sup>Tl<sub>auth</sub> values near the modern open-ocean composition of −6‱. Instead, we observe broadly stable ε<sup>205</sup>Tl<sub>auth</sub> values of around −3 to −4‱ in both studied sections. The lack of any significant Tl isotope shifts in our dataset argues against a short-term global ocean oxygenation event and suggests the global deep ocean was not characterized by modern extents of oxygenation 521–518 Ma. We reinterpret contemporaneous near-modern Mo and U isotope compositions to signal a relatively minor increase in marine oxygenation, likely limited to the continental shelves. However, ε<sup>205</sup>Tl<sub>auth</sub> lower than the average isotopic composition of approximately −2‱ in Ediacaran shales suggests a shift to comparatively better-oxygenated conditions sometime between ~555 Ma and 521 Ma. If diversification at this time was linked to increased ocean oxygen levels, these changes were likely more dominant in the relatively shallow-water settings of continental shelves most densely populated by Cambrian animals and were incapable of dramatically altering seawater Tl isotope mass balance through seafloor Mn-oxide burial.</p>\u0000 </div>","PeriodicalId":173,"journal":{"name":"Geobiology","volume":"23 4","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144782308","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
GeobiologyPub Date : 2025-07-08DOI: 10.1111/gbi.70027
Christopher K. Jones, Jessica M. Labonté, Lauren A. Haygood, Marta E. Torres, Gerhard Bohrmann, Timothy W. Lyons, Natascha Riedinger
{"title":"Impacts on Sedimentary Microbial Communities Related to Temporal Changes in Trace Metal Concentrations","authors":"Christopher K. Jones, Jessica M. Labonté, Lauren A. Haygood, Marta E. Torres, Gerhard Bohrmann, Timothy W. Lyons, Natascha Riedinger","doi":"10.1111/gbi.70027","DOIUrl":"https://doi.org/10.1111/gbi.70027","url":null,"abstract":"<p>Microbial processes in marine sediments drive changes in redox conditions, ultimately controlling the cycling of elements between the dissolved and solid phases. The microbial community driving these cycles depends on trace metals, but it can also be inhibited at elevated metal concentrations. During diagenesis, many trace elements are released from iron (Fe) and manganese (Mn) (oxyhydr)oxides, potentially affecting microbial metabolisms. Here we present results from geochemical and microbiological analyses of samples collected during R/V Polarstern Expedition PS119 to the East Scotia Ridge. The sediments are dominantly diatomaceous ooze with high contents of reactive Fe and Mn (oxyhydr)oxides and increased trace metal contents from nearby hydrothermal vents. Two multi-corer cores were sampled immediately after collection at five specific sediment depths (three splits each), sealed anaerobically in incubation bags, and analyzed in 4-month intervals post collection for major, minor, and trace metals and 16S rRNA gene sequencing. By isolating the sediment from overlying seawater during the incubation process, we simulated the in situ diagenetic processes of Fe and Mn oxide reduction. Our data show that Mn and trace metals, especially Mo, Ni, Tl, and Cu, are mobilized during early diagenesis. Analysis of 16S rRNA genes revealed shifts in the microbial community from Nitrososphaera and Nanoarchaeia to Bacteroidia and Bacilli alongside a marked decrease in richness, Pielou's evenness, and Shannon alpha diversity during the eight-month incubations. We statistically correlate the microbial community shift with the changes in porewater trace metal concentrations, revealing that Mn, Co, Ag, and Tl are driving the microbial compositions in these samples. In this organic matter limited but Fe and Mn (oxyhydr)oxide rich system, we simulate deeper diagenesis to peer into the role of changing Fe, Mn, and trace metal cycles and highlight the role of Fe and Mn (oxyhdyr)oxides as shuttles for trace metals to the deep biosphere. By identifying key metals that are diagenetically cycled and affect the in situ microbial community, we reveal feedbacks between metals and microbial communities that play important roles in biogeochemical cycles on Earth, provide insight into the origin and potential evolution of metabolic pathways in the deep biosphere, and offer clues that may aid in our understanding of Earth's history and potentially beyond.</p>","PeriodicalId":173,"journal":{"name":"Geobiology","volume":"23 4","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/gbi.70027","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144582109","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
GeobiologyPub Date : 2025-06-26DOI: 10.1111/gbi.70025
Andrew Baker, Dale Stokes, Anushree Srivastava, Shannon Rupert, Charles S. Cockell
{"title":"Two Worlds on a Stone: Arctic Desert Hypoliths and Epiliths Show Spatial Niche Differentiation","authors":"Andrew Baker, Dale Stokes, Anushree Srivastava, Shannon Rupert, Charles S. Cockell","doi":"10.1111/gbi.70025","DOIUrl":"https://doi.org/10.1111/gbi.70025","url":null,"abstract":"<p>In Arctic polar deserts, rocks can be extensively colonized by phototrophic hypolithic communities that exploit periglacial sorting processes to grow beneath opaque rocks. These communities are distinguished by green bands that are distinctly and abruptly separated from the black-pigmented communities on the rock surface (epiliths). We used 16S and 18S rDNA culture-independent methods to address the hypothesis that the two communities are different. Although both communities were dominated by cyanobacterial species (<i>Chroococcidiopsis</i> and <i>Nostoc</i> spp.), we found that the hypolithic and epilithic habitats host distinct microbial communities. We found that eukaryotic hypolithic and epilithic communities were statistically similar but that the hypolithic habitats contained tardigrade DNA, showing that the more clement subsurface habitat supports animal life in contrast to the surface of the rocks. These results reveal the distinctive communities and sharp demarcations that can develop across small spatial scales in the Earth's rocky extreme environments.</p>","PeriodicalId":173,"journal":{"name":"Geobiology","volume":"23 4","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/gbi.70025","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144492654","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}