Journal of the American Society for Horticultural Science最新文献

筛选
英文 中文
Physiological Responses of Adults during Soil-mixing Activities Based on the Presence of Soil Microorganisms: A Metabolomics Approach 基于土壤微生物存在的土壤混合活动中成虫生理反应:代谢组学方法
IF 1.9 4区 农林科学
Journal of the American Society for Horticultural Science Pub Date : 2022-05-01 DOI: 10.21273/jashs05146-21
Seon-Ok Kim, S. Son, Min Ji Kim, C. Lee, Sin-Ae Park
{"title":"Physiological Responses of Adults during Soil-mixing Activities Based on the Presence of Soil Microorganisms: A Metabolomics Approach","authors":"Seon-Ok Kim, S. Son, Min Ji Kim, C. Lee, Sin-Ae Park","doi":"10.21273/jashs05146-21","DOIUrl":"https://doi.org/10.21273/jashs05146-21","url":null,"abstract":"Mycobacterium vaccae is a species of nonpathogenic bacterium that lives naturally in soil. This study compared the physiological effects at a metabolomic level with autonomic nervous system responses in adults during soil-mixing activities, based on the presence or absence of M. vaccae in the soil. Twenty-nine adult participants performed soil-mixing activities for 5 minutes using sterilized soil with culture media and M. vaccae, respectively. Blood samples were drawn twice from each participant after each activity. Electroencephalograms and electrocardiograms were measured during the activity. Serum metabolites underwent metabolite profiling by gas chromatography, followed by multivariate analyses. Soil-emitted volatile organic compounds were identified using the solid-phase microextraction and gas chromatography-mass spectroscopy, followed by multivariate analyses. The volatile compound analysis revealed that the metabolites related to esters and sulfur-containing compounds are greater in soil with M. vaccae. Serum metabolomics revealed that the treatment group (soil inoculated by M. vaccae) possesses relatively higher levels of inter-alia organic and amino acids compared with the control group (soil mixed with culture media). In the treatment group, the electroencephalogram and electrocardiogram revealed that alpha band activity of the occipital lobe increases, while heart rate decreases. This study concludes that M. vaccae soil contact can affect human metabolic and autonomic reactions.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43547979","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
DNA Content Estimation in the Genus Salvia 丹参属植物DNA含量的测定
IF 1.9 4区 农林科学
Journal of the American Society for Horticultural Science Pub Date : 2022-05-01 DOI: 10.21273/jashs05175-21
R. Maynard, J. Ruter
{"title":"DNA Content Estimation in the Genus Salvia","authors":"R. Maynard, J. Ruter","doi":"10.21273/jashs05175-21","DOIUrl":"https://doi.org/10.21273/jashs05175-21","url":null,"abstract":"Salvia is a genetically diverse genus in the Lamiaceae family, with hundreds of species distributed globally. With base chromosome numbers ranging from 6 to 19 and ploidy levels ranging from diploid to octoploid, the genus has been proposed to be subdivided based on molecular data rather than morphology. However, little is known about total DNA content across the genus. The DNA content of 141 Salvia genotypes were analyzed using flow cytometry. Samples of Salvia were stained with propidium iodide and compared with the internal standards Pisum sativum ‘Ctirad’ and Solanum lycopersicum ‘Stupické’ to generate estimations of DNA content. Holoploid 2C genome sizes of the analyzed Salvia ranged from 0.63 pg to 6.12 pg. DNA content showed a wide distribution across chromosome number, ploidy, and clade. The wide distribution of DNA content across the genus further indicates the diversity of Salvia and may be useful for future breeding efforts.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47674908","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Proteomic Analysis of Pollen–Stigma Interaction between Vitis rotundifolia and Vitis vinifera 圆叶葡萄与葡萄花粉柱头互作的蛋白质组学分析
IF 1.9 4区 农林科学
Journal of the American Society for Horticultural Science Pub Date : 2022-05-01 DOI: 10.21273/jashs05153-21
Bo Wang, Wei-min Wu, Xi-cheng Wang, Zhuang-wei Wang, Y. Qian
{"title":"Proteomic Analysis of Pollen–Stigma Interaction between Vitis rotundifolia and Vitis vinifera","authors":"Bo Wang, Wei-min Wu, Xi-cheng Wang, Zhuang-wei Wang, Y. Qian","doi":"10.21273/jashs05153-21","DOIUrl":"https://doi.org/10.21273/jashs05153-21","url":null,"abstract":"Muscadine grape (Vitis rotundifolia) is highly resistant to many diseases and insects that attack european grape (Vitis vinifera). However, distant hybridization incompatibility between V. rotundifolia (female) and V. vinifera (male) impedes the utilization of V. rotundifolia in grape breeding. This study used fourth-dimension label-free protein quantitation to detect the key genes and pathways in the V. rotundifolia stigma after self-pollination (V. rotundifolia × V. rotundifolia) and cross-pollination (V. rotundifolia × V. vinifera). A histological analysis showed that pollen tube growth in the stigma of V. rotundifolia was arrested 8 hours after cross-pollination, but not after self-pollination. A proteomic analysis identified 32 differentially expressed proteins (DEPs) in the stigma of V. rotundifolia between self-pollination and cross-pollination. A heatmap analysis grouped these DEPs into four clusters. The top gene ontology terms were ATPase-coupled transmembrane transporter activity, extracellular region, DNA replication, and cellular carbohydrate biosynthetic process. A Kyoto Encyclopedia of Genes and Genomes analysis revealed that these DEPs participated in DNA replication and starch and sucrose metabolism pathways. The downregulated A5AY88, D7TJ35, D7SU26, F6HJI1, and F6GUE7 may have a role in cross incompatibility. This study revealed the cross incompatibility of grapes at histological and proteomic levels.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42567937","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Assessment of Prunus Rootstock Accessions Using Chloroplast and Nuclear Microsatellites 利用叶绿体和核微卫星评价李树砧木材料
IF 1.9 4区 农林科学
Journal of the American Society for Horticultural Science Pub Date : 2022-03-01 DOI: 10.21273/jashs05137-21
Chunxian Chen, L. Rodríguez-Bonilla, T. Beckman
{"title":"Assessment of Prunus Rootstock Accessions Using Chloroplast and Nuclear Microsatellites","authors":"Chunxian Chen, L. Rodríguez-Bonilla, T. Beckman","doi":"10.21273/jashs05137-21","DOIUrl":"https://doi.org/10.21273/jashs05137-21","url":null,"abstract":"\u0000A rootstock collection of Prunus species and hybrids is maintained at the U.S. Department of Agriculture stone fruit breeding program at Byron, GA. We genotyped 66 Prunus rootstock accessions and clones using chloroplast and nuclear microsatellites in this study. Chloroplast microsatellites revealed that the accessions belong to four previously defined maternal lineage groups (MLG-1 to -4) and five new ones (MLG-9 to -13). MLG-1 and -2 share the same chloroplast alleles of ‘Chinese Cling’ peach (Prunus persica) derived scions and American scions and rootstocks related to early European introductions, respectively. MLG-3 included ‘Guardian’ rootstock and its descendants. MLG-4 had a single genotype, ‘Okinawa’, that is the maternal parent of ‘Flordaking’. MLG-9 and MLG-11 to -13 included hybrids with different plums (Prunus salicina, Prunus cerasifera, Prunus tomentosa, or Prunus angustifolia) in their maternal parentage. MLG-10 included hybrids from almond (Prunus. dulcis) in the maternal parentage. The neighbor-joining phylogenetic tree based on nuclear microsatellite genotyping data showed several clusters. Cluster I included only one scion cultivar Elberta from MLG-1. Clusters II, III, and V contained peach accessions mostly in MLG-2. Clusters IV and VI included accessions mostly in MLG-3. Cluster VII included most accessions of plum-peach hybrid origin and those found within MLG-13. Cluster VIII was found to be mixed with different plum-peach hybrids and hybrids from other Prunus species, most of which were found in MLG-10, -11, and -12. Most accessions in Cluster IX were related to plums in MLG-11 and a few accessions in MLG-9.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44386226","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Root Absorption and Xylem Movement of Ethephon in Tomato 乙烯利在番茄中的根系吸收和木质部运动
IF 1.9 4区 农林科学
Journal of the American Society for Horticultural Science Pub Date : 2022-03-01 DOI: 10.21273/jashs05116-21
W. Miller, Wanxiang Lu, Dongqin Tang
{"title":"Root Absorption and Xylem Movement of Ethephon in Tomato","authors":"W. Miller, Wanxiang Lu, Dongqin Tang","doi":"10.21273/jashs05116-21","DOIUrl":"https://doi.org/10.21273/jashs05116-21","url":null,"abstract":"Although ethephon is commonly used as a plant growth regulator during commercial production of horticultural crops, information on its movement within plants is limited. In this study, we developed a method to detect ethephon in plant tissues, and determined ethephon localization and movement using tomato (Solanum lycopersicum L.) as a model system. Tissues were ground in an acidic buffer that preserved ethephon intact. Ethylene was released from the extracts by adding sodium hydroxide and was determined subsequently by gas chromatography. Ethephon was detected in leaves within 1 hour of application to peat-based root zones and within 10 minutes in hydroponics. In a pulse–chase experiment, ethephon levels increased initially, then decreased after the plants were returned to ethephon-free solutions. Ethephon was present in directly collected xylem fluid; fluid collected from petiole stumps (after leaf blade excision) had similar ethephon levels between the different petioles. Stem girdling had no effect on ethephon accumulation in leaves. Together, these data indicate ethephon is readily mobile in the xylem stream and provides insight into the commercial use of ethephon as a root zone-applied growth regulator.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43528162","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Temperature and Photoperiod Change the Flowering Process in Prunella vulgaris by Inducing Changes in Morphology, Endogenous Hormones, Carbon/Nitrogen Metabolites, and Gene Expression 温度和光周期通过诱导形态、内源激素、碳/氮代谢物和基因表达的变化来改变夏枯草的开花过程
IF 1.9 4区 农林科学
Journal of the American Society for Horticultural Science Pub Date : 2022-03-01 DOI: 10.21273/jashs05144-21
Zanzan Li, Jinyu Hu, H. Tang, L. Cao, Yu-hang Chen, Q. Guo, Chang-lin Wang
{"title":"Temperature and Photoperiod Change the Flowering Process in Prunella vulgaris by Inducing Changes in Morphology, Endogenous Hormones, Carbon/Nitrogen Metabolites, and Gene Expression","authors":"Zanzan Li, Jinyu Hu, H. Tang, L. Cao, Yu-hang Chen, Q. Guo, Chang-lin Wang","doi":"10.21273/jashs05144-21","DOIUrl":"https://doi.org/10.21273/jashs05144-21","url":null,"abstract":"The spicas of Prunella vulgaris are widely used in the medical, beverage, and ornamental fields. Temperature and photoperiod are the two main ecological factors that determine the transformation of many plants from vegetative growth to reproductive growth. To explore the response of P. vulgaris flowering to temperature and photoperiod induction, we adopted vernalization long-day, vernalization short-day, nonvernalization long-day, and nonvernalization short-day treatments. The results showed that the morphology (total number of leaves, number of branches, number of leaves per branch, and branch length) of the vernalization treatment groups was significantly different from that of other nonvernalization groups, and the photosynthetic pigments, net photosynthetic rate, water use efficiency, stomatal conductance, intercellular CO2 concentration, and transpiration rate increased in the vernalization treatment group. However, the gibberellin 3 (GA3), indole-3-acetic acid and zeatin riboside (ZR) contents were significantly increased under the short-day treatments groups, and the results were the same for the expression of endogenous hormone synthesis genes, except for abscisic acid (ABA). The flowering-related genes soc1, elf3, svp, ga20ox, and cry1 were highly expressed under the vernalization short-day. Therefore, the induction of vernalization is more conducive to the increase in the photosynthetic rate. Temperature and photoperiod synergistically induced the synthesis and accumulation of starch, sugar, amino acids, and protein and affected the content of endogenous hormones and the expression of genes involved in their synthesis. GA3 and ZR had thresholds for their regulation of the flowering process in P. vulgaris, and high concentrations of ABA promoted flowering. Temperature and photoperiod coordinate the expression of the flowering-related genes soc1, elf3, svp, ga20ox, and cry1, thereby affecting the flowering process in P. vulgaris.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47056168","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Photosynthetic Responses of Greenhouse Ornamentals to Interaction of Irradiance, Carbon Dioxide Concentration, and Temperature 温室观赏植物对光照、二氧化碳浓度和温度互作的光合响应
IF 1.9 4区 农林科学
Journal of the American Society for Horticultural Science Pub Date : 2022-03-01 DOI: 10.21273/jashs05115-21
Ian K. Atkins, J. Boldt
{"title":"Photosynthetic Responses of Greenhouse Ornamentals to Interaction of Irradiance, Carbon Dioxide Concentration, and Temperature","authors":"Ian K. Atkins, J. Boldt","doi":"10.21273/jashs05115-21","DOIUrl":"https://doi.org/10.21273/jashs05115-21","url":null,"abstract":"Supplemental lighting, temperature control, and CO2 enrichment can improve the productivity of greenhouse crops, but operating costs for greenhouse control systems to maintain environmental parameters at desired setpoints can be expensive. To balance operating costs with productivity, growers need to be able to predict how a crop will perform as a function of photosynthetic photon flux density (PPFD), CO2 concentration, and temperature. The objective of this study was to explore the response of net photosynthetic rate (Pn) to PPFD and CO2 concentration, for plants acclimated to different growth environment temperatures or light intensities. We measured Pn at all combinations of 14 irradiances and four CO2 concentrations of calibrachoa (Calibrachoa ×hybrida ‘Superbells Lemon Slice’), petunia (Petunia ×hybrida ‘Supertunia Mini Strawberry Pink Veined’), and verbena (Verbena ×hybrida ‘Superbena Royale Whitecap’) grown at three light intensities, and of geranium (Pelargonium ×hortorum ‘Maverick Red’), pepper (Capsicum annuum ‘California Wonder’), and sunflower (Helianthus annuus ‘Pacino Gold’) grown at three different temperatures. Sunflower, pepper, and geranium were fit to a model representing Pn as a function of PPFD, CO2 concentration, and leaf temperature. Photosynthetic light response curves, at each CO2 concentration, were fit for each species and growth environment using a nonrectangular hyperbola. These models can be used to identify multiple combinations of PPFD, CO2 concentration, and leaf temperature that would result in equivalent rates of photosynthesis, allowing the most cost-effective combination to be chosen.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43303108","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Piloting a full-year, optics-based high school course on quantum computing. 试行基于光学的全年量子计算高中课程。
4区 农林科学
Journal of the American Society for Horticultural Science Pub Date : 2022-03-01 Epub Date: 2021-12-29 DOI: 10.1088/1361-6552/ac3dc2
Joel A Walsh, Mic Fenech, Derrick L Tucker, Catherine Riegle-Crumb, Brian R La Cour
{"title":"Piloting a full-year, optics-based high school course on quantum computing.","authors":"Joel A Walsh, Mic Fenech, Derrick L Tucker, Catherine Riegle-Crumb, Brian R La Cour","doi":"10.1088/1361-6552/ac3dc2","DOIUrl":"10.1088/1361-6552/ac3dc2","url":null,"abstract":"<p><p>Quantum computing was once regarded as a mere theoretical possibility, but recent advances in engineering and materials science have brought practical quantum computers closer to reality. Currently, representatives from industry, academia, and governments across the world are working to build the educational structures needed to produce the quantum workforce of the future. Less attention has been paid to growing quantum computing capacity at the high school level. This article details work at The University of Texas at Austin to develop and pilot the first full-year high school quantum computing class. Over the course of two years, researchers and practitioners involved with the project learned several pedagogical and practical lessons that can be helpful for quantum computing course design and implementation at the secondary level. In particular, we find that the use of classical optics provides a clear and accessible avenue for representing quantum states and gate operators and facilitates both learning and the transfer of knowledge to other Science, Technology, and Engineering (STEM) skills. Furthermore, students found that exploring quantum optical phenomena prior to the introduction of mathematical models helped in the understanding and mastery of the material.</p>","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":"120 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10796075/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89867378","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Burn Shock and Resuscitation: Review and State of the Science. 烧伤休克与复苏:科学回顾与现状》。
IF 1.4 4区 农林科学
Journal of the American Society for Horticultural Science Pub Date : 2022-02-26 DOI: 10.1093/jbcr/irac025
Robert Cartotto, David M Burmeister, John C Kubasiak
{"title":"Burn Shock and Resuscitation: Review and State of the Science.","authors":"Robert Cartotto, David M Burmeister, John C Kubasiak","doi":"10.1093/jbcr/irac025","DOIUrl":"10.1093/jbcr/irac025","url":null,"abstract":"<p><p>Burn shock and acute fluid resuscitation continue to spark intense interest and debate among burn clinicians. Following a major burn injury, fluid resuscitation of burn shock is life-saving, but paradoxically can also be a source of increased morbidity and mortality because of the unintended consequence of systemic edema formation. Considerable research over the past two decades has been devoted to understanding the mechanisms of edema formation, and to develop strategies to curb resuscitation fluids and limit edema development. Recognition of burn endotheliopathy - injury to the endothelium's glycocalyx layer- is one of the most important recent developments in our understanding of burn shock pathophysiology. Newer monitoring approaches and resuscitation endpoints, along with alternative resuscitation strategies to crystalloids alone, such as administration of albumin, or plasma, or high dose ascorbic acid, have had mixed results in limiting fluid creep. Clear demonstration of improvements in outcomes with all of these approaches remains elusive. This comprehensive review article on burn shock and acute resuscitation accompanies the American Burn Association's State of the Science meeting held in New Orleans, LA on November 2-3, 2021 and the Proceedings of that conference published in this journal.</p>","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":"141 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2022-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89918842","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transcriptome-wide Identification and Characterization of microRNAs and Their Targets in a Highly Adaptable Conifer Platycladus orientalis 高适应性侧柏中微小RNA及其靶标的转录组鉴定与表征
IF 1.9 4区 农林科学
Journal of the American Society for Horticultural Science Pub Date : 2022-01-01 DOI: 10.21273/jashs05091-21
Ying Yang, Xian-Ge Hu, Bingsong Zheng, Yue Li, Tongli Wang, Anket Sharma, Huwei Yuan, Jian-Feng Mao
{"title":"Transcriptome-wide Identification and Characterization of microRNAs and Their Targets in a Highly Adaptable Conifer Platycladus orientalis","authors":"Ying Yang, Xian-Ge Hu, Bingsong Zheng, Yue Li, Tongli Wang, Anket Sharma, Huwei Yuan, Jian-Feng Mao","doi":"10.21273/jashs05091-21","DOIUrl":"https://doi.org/10.21273/jashs05091-21","url":null,"abstract":"MicroRNAs (miRNAs) are short noncoding RNAs (20–25 nucleotides) that regulate gene expression posttranscriptionally. However, identification and characterization of miRNAs remain limited for conifer species. In this study, we applied transcriptome-wide miRNAs sequencing to a conifer species Platycladus orientalis, which is highly adaptable to a wide range of environmental adversities, including drought, barren soil, and mild salinity. A total of 17,181,542 raw reads were obtained from the Illumina sequencing platform; 31 conserved and 91 novel miRNAs were identified, and their unique characteristics were further analyzed. Ten randomly selected miRNAs were validated by quantificational real-time polymerase chain reaction. Through miRNA target predictions based on psRNATarget, 2331 unique mRNAs were predicted to be targets of P. orientalis miRNAs that involved in 187 metabolic pathways in KEGG database. These targets included not only important transcription factors (e.g., class III homeodomain leucine zipper targeted by por-miR166d) but also indispensable nontranscriptional factor proteins (i.e., por-miR482a-3p regulated nucleotide-binding site leucine-rich repeat protein). Interestingly, six miRNAs (por-miR16, -miR44, -miR60-5p, -miR69–3p, -miR166b-5p, and -miR395c) were found in adaptation-related pathways (e.g., drought), indicating their possible involved in this species’ stress-tolerance characteristics. The present study provided essential information for understanding the regulatory role of miRNAs in P. orientalis and sheds light on their possible use in tree improvement for stress tolerance.","PeriodicalId":17226,"journal":{"name":"Journal of the American Society for Horticultural Science","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49524342","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
相关产品
×
本文献相关产品
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信