Journal of Systematics and Evolution最新文献

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Diversity, taxonomy, and history of the tropical fern genus Didymoglossum Desv. (Hymenophyllaceae, Polypodiidae) in Africa 非洲热带蕨类植物 Didymoglossum Desv.属(石蒜科,Polypodiidae)的多样性、分类和历史
1区 生物学
Journal of Systematics and Evolution Pub Date : 2023-02-20 DOI: 10.1111/jse.12951
Jean-Yves Dubuisson, Adèle Nivart, Ehoarn Bidault, Vincent Deblauwe, Vincent Droissart, Narcisse G. Kamdem, Germinal Rouhan, Atsushi Ebihara, Timothée le Péchon
{"title":"Diversity, taxonomy, and history of the tropical fern genus Didymoglossum Desv. (Hymenophyllaceae, Polypodiidae) in Africa","authors":"Jean-Yves Dubuisson,&nbsp;Adèle Nivart,&nbsp;Ehoarn Bidault,&nbsp;Vincent Deblauwe,&nbsp;Vincent Droissart,&nbsp;Narcisse G. Kamdem,&nbsp;Germinal Rouhan,&nbsp;Atsushi Ebihara,&nbsp;Timothée le Péchon","doi":"10.1111/jse.12951","DOIUrl":"10.1111/jse.12951","url":null,"abstract":"<p>The fern genus <i>Didymoglossum</i> (Hymenophyllaceae) is not so diverse in Africa with seven species at most. However, its local taxonomy is surprisingly still strongly debated, in particular within the <i>Didymoglossum erosum</i> complex interpreted either as a single polymorphic species or as a group of at least three distinct but morphologically very close taxa (<i>D. erosum</i>, <i>Didymoglossum chamaedrys</i>, and <i>Didymoglossum benlii</i>). Investigating these taxonomic issues and more generally the diversity of the genus in Africa and its origin, we conducted a complete anatomo–morphological analysis coupled with a molecular phylogenetic work based on <i>rbcL</i>. Our results support the recognition of all seven species, including <i>Didymoglossum robinsonii</i> that is likely distinct from the Neotropical <i>Didymoglossum reptans</i> to which the African populations were traditionally attributed. We here propose new characters and a novel key to distinguish the seven African species which also include <i>Didymoglossum ballardianum</i>, <i>Didymoglossum lenormandii</i>, and <i>Didymoglossum liberiense</i>. Once the taxonomy is clarified with respect to the distinct evolutionary lineages evidenced, the biogeographic history of the genus in Africa is discussed based on a divergence time estimation and the reconstruction of the ancestral geographic areas. These analyses reveal a Mesozoic (Cretaceous) vicariance event within <i>Didymoglossum</i> which is the second one hypothesized for the family Hymenophyllaceae.</p>","PeriodicalId":17087,"journal":{"name":"Journal of Systematics and Evolution","volume":"62 1","pages":"84-101"},"PeriodicalIF":0.0,"publicationDate":"2023-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jse.12951","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72837836","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Species boundaries and conservation implications of Cinnamomum japonicum, an endangered plant in China 中国濒危植物肉桂的物种界限和保护意义
1区 生物学
Journal of Systematics and Evolution Pub Date : 2023-02-19 DOI: 10.1111/jse.12950
Han-Yang Lin, Yue Yang, Wen-Hao Li, Yu-Xin Luo, Xiao-Hua Bai, Tetsuo Ohi-Toma, Changkyun Kim, Joo-Hwan Kim, Yun-Peng Zhao
{"title":"Species boundaries and conservation implications of Cinnamomum japonicum, an endangered plant in China","authors":"Han-Yang Lin,&nbsp;Yue Yang,&nbsp;Wen-Hao Li,&nbsp;Yu-Xin Luo,&nbsp;Xiao-Hua Bai,&nbsp;Tetsuo Ohi-Toma,&nbsp;Changkyun Kim,&nbsp;Joo-Hwan Kim,&nbsp;Yun-Peng Zhao","doi":"10.1111/jse.12950","DOIUrl":"10.1111/jse.12950","url":null,"abstract":"<p>Clear species boundaries are crucial for plans and actions on biodiversity conservation. However, morphological similarities among allied species can result in taxonomic difficulties, thus impeding conservation efforts. In China, <i>Cinnamomum japonicum</i> <i>Siebold</i> is a well-known endangered plant, yet suffers from longstanding taxonomic issues. Here, we explicitly evaluate whether <i>C. japonicum</i>, <i>C. chenii</i>, and <i>C. chekiangense</i> are the same <i>phylogenetic</i> species on the basis of a multi-individual sampling strategy. We identified three sets of low-copy <i>orthologous</i> genes from 19 <i>Lauraceae taxa</i> for <i>phylogenetic</i> inferences. Both the concatenation and coalescent-based phylogenies supported that <i>C. chenii</i> individuals were embedded in the <i>C. japonicum clade</i>, indicating these two <i>taxa</i> are <i>conspecific</i>. Meanwhile, <i>C. chekiangense</i> accessions formed a <i>monophyly</i> which was not sister to <i>C. japonicum</i>. This result, together with the morphological differences that the leaves of <i>C. japonicum</i> are <i>glabrous</i> with a <i>faveolate</i> pattern of venation while those of <i>C. chekiangense</i> have <i>trichomes</i> and <i>inevident</i> lateral veins, led us to consider both as two distinct species. Based on 17 728 neutral single nucleotide polymorphisms (<i>SNPs</i>), the ADMIXTURE analysis suggested that the Chinese <i>C. japonicum</i> populations in <i>Zhoushan</i> Archipelago (=<i>C. chenii</i>) were genetically differentiated from the Japanese and Korean ones. Furthermore, ecological niche modeling predicted that the present distribution area of Chinese <i>C. japonicum</i> is likely to be unsuitable under global warming scenarios. Together with its limited distribution and genetic uniqueness, we recommend that Chinese <i>C. japonicum</i> deserves conservation priorities.</p>","PeriodicalId":17087,"journal":{"name":"Journal of Systematics and Evolution","volume":"62 1","pages":"73-83"},"PeriodicalIF":0.0,"publicationDate":"2023-02-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90600241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylogeography and introgression between Pinus kesiya and Pinus yunnanensis in Southeast Asia 东南亚黑松和云南松之间的系统地理学和引种关系
1区 生物学
Journal of Systematics and Evolution Pub Date : 2023-01-31 DOI: 10.1111/jse.12949
Jie Gao, Kyle W. Tomlinson, Wei Zhao, Baosheng Wang, Ralph Sedricke Lapuz, Jing-Xin Liu, Bonifacio O. Pasion, Bach T. Hai, Souvick Chanthayod, Jin Chen, Xiao-Ru Wang
{"title":"Phylogeography and introgression between Pinus kesiya and Pinus yunnanensis in Southeast Asia","authors":"Jie Gao,&nbsp;Kyle W. Tomlinson,&nbsp;Wei Zhao,&nbsp;Baosheng Wang,&nbsp;Ralph Sedricke Lapuz,&nbsp;Jing-Xin Liu,&nbsp;Bonifacio O. Pasion,&nbsp;Bach T. Hai,&nbsp;Souvick Chanthayod,&nbsp;Jin Chen,&nbsp;Xiao-Ru Wang","doi":"10.1111/jse.12949","DOIUrl":"10.1111/jse.12949","url":null,"abstract":"<p>Southeast Asia (SEA) has seen strong climatic oscillations and fluctuations in sea levels during the Quaternary. The impact of past climate changes on the evolution and distribution of local flora in SEA is still poorly understood. Here we aim to infer how the Quaternary climate change affects the evolutionary process and range shifts in two pine species. We investigated the population genetic structure and diversity using cytoplasmic DNA markers, and performed ecological niche modeling to reconstruct the species past distribution and to project range shift under future climates. We found substantial gene flow across the continuous distribution of the subtropical <i>Pinus yunnanensis</i>. In contrast, the tropical <i>Pinus kesiya</i> showed a strong population structure in accordance with its disjunct distribution across montane islands in Indochina and the Philippines. A broad hybrid zone of the two species occurs in southern Yunnan. Asymmetric introgression from the two species was detected in this zone with dominant mitochondrial gene flow from <i>P. yunnanensis</i> and chloroplast gene flow from <i>P. kesiya</i>. The observed population structure suggests a typical postglaciation expansion in <i>P. yunnanensis</i>, and a glacial expansion and interglacial contraction in <i>P. kesiya</i>. Ecological niche modeling supports the inferred demographic history and predicts a decrease in range size for <i>P. kesiya</i> under future climates. Our results suggest that tropical pine species in SEA have undergone evolutionary trajectories different from high latitude species related to their Quaternary climate histories. We also illustrate the need for urgent conservation actions in this fragmented landscape.</p>","PeriodicalId":17087,"journal":{"name":"Journal of Systematics and Evolution","volume":"62 1","pages":"120-134"},"PeriodicalIF":0.0,"publicationDate":"2023-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jse.12949","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72882657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Collections-based systematics in the new age of discovery: Celebrating the legacy and life of Professor Wen-Tsai Wang 新发现时代的集合系统学——纪念王教授的遗产与生平
1区 生物学
Journal of Systematics and Evolution Pub Date : 2023-01-18 DOI: 10.1111/jse.12945
Jun Wen, Lei Xie, Zhi-Yun Zhang, Yan Liang, Song Ge
{"title":"Collections-based systematics in the new age of discovery: Celebrating the legacy and life of Professor Wen-Tsai Wang","authors":"Jun Wen,&nbsp;Lei Xie,&nbsp;Zhi-Yun Zhang,&nbsp;Yan Liang,&nbsp;Song Ge","doi":"10.1111/jse.12945","DOIUrl":"https://doi.org/10.1111/jse.12945","url":null,"abstract":"&lt;p&gt;Professor Wen-Tsai Wang (王文采, June 5, 1926–November 16, 2022) was an academician of the Chinese Academy of Sciences (CAS) and a legendary plant taxonomist at the Institute of Botany of CAS (Fig. 1). Herein, we organize a virtual special issue in &lt;i&gt;Journal of Systematics and Evolution&lt;/i&gt; (JSE) to celebrate the legacy and life of Professor Wang, who was a leading plant taxonomist in China and made important contributions toward advancing the understanding of the flora of China, the biogeography of eastern Asia, and biodiversity research in the vast Hengduan Mountains. He served as the Editor-in-Chief of &lt;i&gt;Acta Phytotaxonomica Sinica&lt;/i&gt; (now &lt;i&gt;JSE&lt;/i&gt;) for 6 years from 1982 to 1988, and trained several generations of plant taxonomists in China (Li, &lt;span&gt;2001&lt;/span&gt;).&lt;/p&gt;&lt;p&gt;Professor Wang graduated from Beijing Normal University in 1949 and joined the Institute of Plant Taxonomy (now Institute of Botany), CAS, as a research assistant in 1950. He was promoted to the professor rank in 1982, and was elected as an academician of CAS in 1993. Professor Wang had a long, productive career at the Herbarium of the Institute of Botany, CAS (Fig. 2), and published more than 250 taxonomic and floristic papers and several monographs (Fig. 3). He described 28 new genera, 303 new taxa at the tribal, sectional, and series ranks, ca. 1370 new species, and 242 new combinations.&lt;/p&gt;&lt;p&gt;Professor Wang was one of the most important participants in the compilation of the enormous 8-volume series &lt;i&gt;Iconographia Cormophytorum Sinicorum&lt;/i&gt; (Institute of Botany, CAS, &lt;span&gt;1972&lt;/span&gt;–1983) (Fig. 4). He was first assigned to be in charge of the preparation of the book series &lt;i&gt;Iconographia Cormophytorum Sinicorum&lt;/i&gt; in 1965 to set the foundation for preparing &lt;i&gt;Flora Reipublicae Popularis Sinicae&lt;/i&gt; (FRPS) and help with plant identifications in China. The book series included 11 000 higher plant species of China with brief descriptions on morphology, ecology, distribution, and uses, 9082 of which had line drawings. He contributed the treatments of several families in this book series, including Boraginaceae, Geraniaceae, Gesneriaceae, Papaveraceae, Proteaceae, Ranunculaceae, Urticaceae, and Vitaceae. This book series has been widely used by scientific institutions, colleges, and universities to train botanists and young students in biology throughout China and became the most important botanical classics from China.&lt;/p&gt;&lt;p&gt;Professor Wang was a taxonomic authority on several difficult plant families in China, including Boraginaceae, Rubiaceae, Ranunculaceae, Gesneriaceae, Urticaceae, and Vitaceae, through his extensive herbarium and field research (Fig. 5). He contributed several treatments to &lt;i&gt;Flora Reipublicae Popularis Sinicae&lt;/i&gt;, treating part of the Ranunculaceae (&lt;i&gt;Aconitum&lt;/i&gt;, &lt;i&gt;Delphinium&lt;/i&gt;, &lt;i&gt;Anemone&lt;/i&gt;, and several small genera) (Wang, &lt;span&gt;1979&lt;/span&gt;, &lt;span&gt;1980&lt;/span&gt;), Gesneriaceae (Wang, &lt;span&gt;1990&lt;/span&gt;), Boraginaceae (Kung &amp; Wang, ","PeriodicalId":17087,"journal":{"name":"Journal of Systematics and Evolution","volume":"61 1","pages":"1-10"},"PeriodicalIF":0.0,"publicationDate":"2023-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jse.12945","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"50137012","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
List of Reviewers 审核人名单
1区 生物学
Journal of Systematics and Evolution Pub Date : 2023-01-18 DOI: 10.1111/jse.12944
{"title":"List of Reviewers","authors":"","doi":"10.1111/jse.12944","DOIUrl":"https://doi.org/10.1111/jse.12944","url":null,"abstract":"","PeriodicalId":17087,"journal":{"name":"Journal of Systematics and Evolution","volume":"61 1","pages":"251-252"},"PeriodicalIF":0.0,"publicationDate":"2023-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"50151992","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylogenomic insights into the reticulate evolution of Camellia sect. Paracamellia Sealy (Theaceae) 系统发生组学对山茶花科网状结构演化的启示Paracamellia Sealy(山茶科)
1区 生物学
Journal of Systematics and Evolution Pub Date : 2023-01-11 DOI: 10.1111/jse.12948
Sheng-Yuan Qin, Kai Chen, Wen-Ju Zhang, Xiao-Guo Xiang, Zheng-Yu Zuo, Cen Guo, Yao Zhao, Lin-Feng Li, Yu-Guo Wang, Zhi-Ping Song, Ji Yang, Xiao-Qiang Yang, Jian Zhang, Wei-Tao Jin, Qiang Wen, Song-Zi Zhao, Jia-Kuan Chen, De-Zhu Li, Jun Rong
{"title":"Phylogenomic insights into the reticulate evolution of Camellia sect. Paracamellia Sealy (Theaceae)","authors":"Sheng-Yuan Qin,&nbsp;Kai Chen,&nbsp;Wen-Ju Zhang,&nbsp;Xiao-Guo Xiang,&nbsp;Zheng-Yu Zuo,&nbsp;Cen Guo,&nbsp;Yao Zhao,&nbsp;Lin-Feng Li,&nbsp;Yu-Guo Wang,&nbsp;Zhi-Ping Song,&nbsp;Ji Yang,&nbsp;Xiao-Qiang Yang,&nbsp;Jian Zhang,&nbsp;Wei-Tao Jin,&nbsp;Qiang Wen,&nbsp;Song-Zi Zhao,&nbsp;Jia-Kuan Chen,&nbsp;De-Zhu Li,&nbsp;Jun Rong","doi":"10.1111/jse.12948","DOIUrl":"10.1111/jse.12948","url":null,"abstract":"<p>Polyploids are common in <i>Camellia</i> sect. <i>Paracamellia</i>, which contain many important oil crop species. However, their complex evolutionary history is largely unclear. In this study, 22 transcriptomes and 19 plastomes of related species of <i>Camellia</i> were sequenced and assembled, providing the most completed taxa sampling of <i>Camellia</i> sect. <i>Oleifera</i> and <i>C</i>. sect. <i>Paracamellia</i>. Phylogenetic trees were reconstructed with predicted single-copy nuclear genes and plastomes. Phylogenetic trees with nuclear genes demonstrated that <i>C</i>. sect. <i>Oleifera</i> should be merged into <i>C</i>. sect. <i>Paracamellia</i>. Cytonuclear discordance and network analyses suggested hybridizations among polyploid species and relatives. The divergence of major clades in <i>C</i>. sect. <i>Paracamellia</i> was dated to be during the middle to late Miocene from the ancestral Lingnan region, and a rapid diversification during the Quaternary was found, probably through hybridization and polyploidization. The tetraploid <i>Camellia meiocarpa</i> Hu may have originated from hybridization between closely related diploid species. The hexaploid <i>Camellia oleifera</i> C. Abel probably originated from hybridization between closely related diploid and tetraploid (e.g., <i>C. meiocarpa</i>) species. The octoploid <i>Camellia vietnamensis</i> T. C. Huang ex Hu could have originated from hybridization between hexaploid <i>C. oleifera</i> and the closely related diploid species. Hybridization and polyploidization played an important role in generating the rich variation of important fruit traits, especially increased fruit size in polyploid species.</p>","PeriodicalId":17087,"journal":{"name":"Journal of Systematics and Evolution","volume":"62 1","pages":"38-54"},"PeriodicalIF":0.0,"publicationDate":"2023-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"75696361","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Solid-phase microextraction and cuticular hydrocarbon differences related to reproductive activity in juniper bark borer Semanotus bifasciatus Motschulsky 固相微萃取和表皮碳氢化合物差异与刺柏二孔虫繁殖活性的关系
1区 生物学
Journal of Systematics and Evolution Pub Date : 2023-01-11 DOI: 10.1111/jse.12947
Jia-Xing Fang, Da-Feng Chen, Xia Shi, Su-Fang Zhang, Fu Liu, Wei-Xing Shen, Chun-Yan Jia, Shen-Cheng Ma, Zhen Zhang, Xiang-Bo Kong
{"title":"Solid-phase microextraction and cuticular hydrocarbon differences related to reproductive activity in juniper bark borer Semanotus bifasciatus Motschulsky","authors":"Jia-Xing Fang,&nbsp;Da-Feng Chen,&nbsp;Xia Shi,&nbsp;Su-Fang Zhang,&nbsp;Fu Liu,&nbsp;Wei-Xing Shen,&nbsp;Chun-Yan Jia,&nbsp;Shen-Cheng Ma,&nbsp;Zhen Zhang,&nbsp;Xiang-Bo Kong","doi":"10.1111/jse.12947","DOIUrl":"https://doi.org/10.1111/jse.12947","url":null,"abstract":"<p>Cuticular hydrocarbons of Cerambycidae species can function as signals for sex recognition. Little is known about the copulatory signals of the juniper bark borer <i>Semanotus bifasciatus</i>, a major economic threat to <i>Platycladus orientalis</i> Franco in China. Here, we investigated the cuticular hydrocarbons of both sexes of <i>S. bifasciatus</i> to determine the chemically mediated mating signals using the solid-phase microextraction (SPME) technique with carbowax/divinylbenzene fibers (CAR/DVB) and then analyzed by coupled gas chromatography-mass spectrometry (GC-MS). A series of aliphatic saturated straight-chain <i>n</i>-alkanes (<i>n</i>-C<sub>23</sub> to <i>n</i>-C<sub>28</sub>), internally branched monomethylalkanes at carbons 3, 11, or 13, and dimethylalkanes were identified, which showed no qualitative differences in either sex and were similar in the samples with SPME fiber extraction and those with hexane extraction. The bioassay showed that 11-methylpentacosane (11-MeC<sub>25</sub>), 11-methylhexacosane (11-MeC<sub>26</sub>), and 11-methylheptacosane (11-MeC<sub>27</sub>) have sex-specific recognition functions that triggered more mating attempts at a female-specific ratio of 100:4:60 than at a male-specific ratio of 100:85:50. In addition, the female-specific ratio of 11-methylalkanes can elicit about 70% of male mating attempts within about 60 s, whereas live females elicit about 98% of male mating attempts within 25 s. The discrepancy in the initiation of mating attempts by synthetic mixtures and live females suggests that the methyl isomers 3-MeC<sub>25</sub>, 3-MeC<sub>27</sub>, and/or 11,15-diMeC<sub>27</sub> may also be involved in the mating behavior of <i>S. bifasciatus</i>. These results suggest that 11-MeC<sub>25</sub>, 11-MeC<sub>26</sub>, and 11-MeC<sub>27</sub> constitute the contact sex pheromone of <i>S. bifasciatus</i>, with the presence or absence of 11-MeC<sub>26</sub> in particular playing an important role in mate recognition by males.</p>","PeriodicalId":17087,"journal":{"name":"Journal of Systematics and Evolution","volume":"61 3","pages":"498-505"},"PeriodicalIF":0.0,"publicationDate":"2023-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jse.12947","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"50149247","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Ancient genome of Empress Ashina reveals the Northeast Asian origin of Göktürk Khanate 雅什娜皇后的古代基因组揭示了Göktürk汗国的东北亚起源
1区 生物学
Journal of Systematics and Evolution Pub Date : 2023-01-09 DOI: 10.1111/jse.12938
Xiao-Min Yang, Hai-Liang Meng, Jian-Lin Zhang, Yao Yu, Edward Allen, Zi-Yang Xia, Kong-Yang Zhu, Pan-Xin Du, Xiao-Ying Ren, Jian-Xue Xiong, Xiao-Yu Lu, Yi Ding, Sheng Han, Wei-Peng Liu, Li Jin, Chuan-Chao Wang, Shao-Qing Wen
{"title":"Ancient genome of Empress Ashina reveals the Northeast Asian origin of Göktürk Khanate","authors":"Xiao-Min Yang,&nbsp;Hai-Liang Meng,&nbsp;Jian-Lin Zhang,&nbsp;Yao Yu,&nbsp;Edward Allen,&nbsp;Zi-Yang Xia,&nbsp;Kong-Yang Zhu,&nbsp;Pan-Xin Du,&nbsp;Xiao-Ying Ren,&nbsp;Jian-Xue Xiong,&nbsp;Xiao-Yu Lu,&nbsp;Yi Ding,&nbsp;Sheng Han,&nbsp;Wei-Peng Liu,&nbsp;Li Jin,&nbsp;Chuan-Chao Wang,&nbsp;Shao-Qing Wen","doi":"10.1111/jse.12938","DOIUrl":"10.1111/jse.12938","url":null,"abstract":"","PeriodicalId":17087,"journal":{"name":"Journal of Systematics and Evolution","volume":"61 6","pages":"1056-1064"},"PeriodicalIF":0.0,"publicationDate":"2023-01-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"119112281","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylogenomics, divergence time estimation, and adaptive evolution in the Polygonoideae (Polygonaceae) 蓼科蓼科植物的系统基因组学、分化时间估计及适应性进化
1区 生物学
Journal of Systematics and Evolution Pub Date : 2022-12-30 DOI: 10.1111/jse.12946
Dong-Ling Cao, Xue-Jie Zhang, Xiao-Jian Qu, Shou-Jin Fan
{"title":"Phylogenomics, divergence time estimation, and adaptive evolution in the Polygonoideae (Polygonaceae)","authors":"Dong-Ling Cao,&nbsp;Xue-Jie Zhang,&nbsp;Xiao-Jian Qu,&nbsp;Shou-Jin Fan","doi":"10.1111/jse.12946","DOIUrl":"10.1111/jse.12946","url":null,"abstract":"<p>Previous phylogenetic analyses indicated that Polygonoideae, the largest subfamily in the Polygonaceae, is monophyletic. Phylogenetic relationships within the Polygonoideae have been substantially controversial. We collected 160 samples representing all currently recognized tribes for a more comprehensive phylogenetic analysis of the subfamily. Here, we reconstructed phylogenetic relationships of the Polygonoideae, inferred ancestral character states, and estimated the divergence time with a dense taxon sampling. This study corroborated and expanded previous results regarding the phylogenetic relationships of the Polygonoideae clade, and resolved the phylogenetic status of some controversial taxa by integrating molecular and morphological evidence. Phylogenetic analyses based on the complete plastomes suggested strong support for six primary clades that correspond to the most recent circumscription of tribes: Polygoneae, Rumiceae, Calligoneae, Pteroxygoneae, Fagopyreae, and Persicarieae. In addition, we provided further morphological data and assessed characters that supported different clades. The 3-colpate pollen, 5-parted perianth, and 3 styles were inferred to be the ancestral states of Polygonoideae. Divergence time estimation revealed that Polygonoideae originated around the late Cretaceous, and diversification was concentrated in the Eocene and Miocene. Time estimation indicated that the rapid uplift of the Tibetan Plateau and the intensification of the Asian monsoons might be potential driving forces for the diversification of Polygonoideae. Overall, this study advances our understanding of the phylogeny and diversification of the Polygonoideae and highlights the adaptive evolution of the taxa.</p>","PeriodicalId":17087,"journal":{"name":"Journal of Systematics and Evolution","volume":"61 6","pages":"1004-1019"},"PeriodicalIF":0.0,"publicationDate":"2022-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81914881","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mitochondrial genome phylogeny reveals the deep-time origin of Gomphomastacinae (Orthoptera: Eumastacidae) and its alpine genera in China 线粒体基因组系统发育揭示了中国gomphomastacae(直翅目:真马蝇科)及其高山属的深时间起源
1区 生物学
Journal of Systematics and Evolution Pub Date : 2022-12-28 DOI: 10.1111/jse.12943
Jun-Jie Ge, Hong-Fei Ying, Sheng-Quan Xu, Hua-Teng Huang
{"title":"Mitochondrial genome phylogeny reveals the deep-time origin of Gomphomastacinae (Orthoptera: Eumastacidae) and its alpine genera in China","authors":"Jun-Jie Ge,&nbsp;Hong-Fei Ying,&nbsp;Sheng-Quan Xu,&nbsp;Hua-Teng Huang","doi":"10.1111/jse.12943","DOIUrl":"10.1111/jse.12943","url":null,"abstract":"<p>Gomphomastacinae is a grasshopper subfamily in Eumastacidae, with a morphology and distribution distinct from other subfamilies. The alpine genera of Gomphomastacinae that inhabit the Qinghai–Tibet Plateau in China show unique characteristics adapted to high-altitude life. However, their phylogenetic position and biogeographic history remain controversial. Thus, to determine the diversification history of these alpine genera and the origin of the subfamily, we obtained mitochondrial genome sequences from all seven Gomphomastacinae genera distributed in China. The reconstructed phylogeny was well supported and confirmed the phylogenetic position of Gomphomastacinae within Eumastacidae. Time calibration revealed a deep-time origin of the subfamily dating back to the Cretaceous period, and the diversification among alpine genera was also an ancient pre-Miocene event (30–50 Ma). Based on phylogeny and time estimates, the most likely biogeographic scenario is that Gomphomastacinae originated from an ancestral lineage that lived in East Gondwana and dispersed to Central and Western Asia through India. Subsequently, the alpine genera likely diverged along with the uplift of the Qinghai–Tibet Plateau and survived drastic climate change by in situ adaptation to high-altitude dwellings.</p>","PeriodicalId":17087,"journal":{"name":"Journal of Systematics and Evolution","volume":"61 6","pages":"1047-1055"},"PeriodicalIF":0.0,"publicationDate":"2022-12-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81730035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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