Journal of Physical Organic Chemistry最新文献

{"title":"Hydrolysis of phosphate diester catalyzed by new mononuclear copper(II) complexes containing selenium ligands","authors":"Laura S. Duarte,&nbsp;Daniele C. Durigon,&nbsp;Antonio L. Braga,&nbsp;Rosely A. Peralta","doi":"10.1002/poc.4596","DOIUrl":"10.1002/poc.4596","url":null,"abstract":"<p>Three new copper(II) mononuclear complexes containing different organoselenium groups (<b>1</b>–<b>3</b>) were synthesized and characterized by the following techniques: elemental analysis, IR and UV-Vis spectroscopies, electrochemical and conductimetric analysis, and mass spectrometry. Three new complexes, with substituents made in the <i>para</i> position of the aromatic portion of the <i>N</i>,<i>N</i>-bis(2-(phenylselanyl)ethyl)amine ligand: <i>p</i>-OCH₃ (<b>1</b>), <i>p</i>-CH₃ (<b>2</b>), and <i>p</i>-Cl (<b>3</b>), were synthetized to compare with the already published complex (<b>4</b>), with no substituents. The ligand coordinates to the copper(II) center in a tridentate way with <i>Se</i>, <i>N</i>, <i>Se</i> as donor atoms. The hydrolytic activity in phosphate diester cleavage of the complexes was investigated using 2,4-BDNPP as substrate. The modifications in the ligand are reflected in the difference between the catalytic and activation parameters, where the <i>k</i>_cat values follow the order: <b>4</b> &gt; <b>2</b> &gt; <b>3</b> &gt; <b>1</b>.</p>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"37 7","pages":""},"PeriodicalIF":1.9,"publicationDate":"2023-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138824298","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Looking inside: Analysis of keto-enol equilibrium using agent-based models","authors":"Gregory A. Bowers,&nbsp;Corey A. Baldasare,&nbsp;Paul G. Seybold","doi":"10.1002/poc.4592","DOIUrl":"10.1002/poc.4592","url":null,"abstract":"<p>The subject of keto-enol equilibrium has a long history and well-established position within physical organic chemistry. Nonetheless, one still finds numerous reports of confusing findings and questions of accuracy when dealing with its practical application. In this report, some apparently anomalous recent observations are reviewed and then reexamined using density functional theory computations and agent-based (cellular automata) models of the keto-enol-anion equilibrium system. It becomes apparent that a resolution of many of the results can be achieved by taking into account the fact that although the ketone form is often present in overwhelmingly greater concentration, the enol can still contribute significantly to formation of the anion through its much greater acidity. Thus, in these cases, dissociation data assigned solely to the ketone form should in fact be recognized as representing a mixture of contributions from both the keto and the (neglected) enol form.</p>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"37 3","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/poc.4592","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138693265","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Activation of dihydrogen by group-14 substituted germylenes","authors":"Somayeh Rahmati,&nbsp;Mojgan Ayoubi-Chianeh,&nbsp;Mohamad Z. Kassaee","doi":"10.1002/poc.4593","DOIUrl":"10.1002/poc.4593","url":null,"abstract":"<p>We have investigated the structural and thermodynamic parameters of group-14 substituted germylenes and their reactivity toward the H₂ molecule using density functional theory (DFT). We conducted the detailed Kohn–Sham molecular orbital (KS-MO) analysis to quantify the effective factors behind the increased reactivity of germylenes in going from C to Sn as substituents. The quantum theory of atoms in molecules (QTAIM), non-covalent interaction (NCI), and natural bond orbital (NBO) analyses revealed the nature of bonds and interactions and demonstrated the reactivity trend of germylenes in the presence of H₂. The results showed that in going from C to Sn, the reactivity increased due to an improvement in \u0000<math>\u0000 <mi>σ</mi></math>-donation interaction between the filled lone-pair orbital of the germylene (LP_Ge) and the \u0000<math>\u0000 <mi>σ</mi></math>*-orbital of H₂, which decreased the reaction barrier (\u0000<math>\u0000 <mo>∆</mo></math><i>E</i>^‡). As the germylene substitution was varied from C to Sn, a significant reactivity was observed for the germylene toward the H₂. This observation was caused by a reduction in steric repulsion between the germylene and the H₂ and less activation energy due to the higher \u0000<math>\u0000 <mi>σ</mi></math>-donation and lower back-donation. We have presented the reactivity of new and rationally designed germylenes toward H₂ using various analyses that will serve as a guide for the activation of small molecules such as H₂, which is employed in many subsequent reactions.</p>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"37 3","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138574026","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A DFT approach toward designing selenophene-based unfused small molecule acceptors by end-capped modification for improving the photovoltaic performance of organic solar cells","authors":"Jaweria Rukhsar,&nbsp;Muhammad Waqas,&nbsp;Muhamed Salim Akhter,&nbsp;Mohamed Shaban,&nbsp;Sameerah I. Al-Saeedi,&nbsp;Muhammad Shabir Mahr,&nbsp;Tamer H. A. Hasanin,&nbsp;Mahmoud A. A. Ibrahim,&nbsp;Naifa S. Alatawi,&nbsp;Rasheed Ahmad Khera","doi":"10.1002/poc.4587","DOIUrl":"10.1002/poc.4587","url":null,"abstract":"<p>In this study, we have developed a series of eight non-fullerene acceptors, constituting A-D-A type small molecules named (SS1–SS8) to enlighten the open-circuit voltage (<i>V</i>_oc) and the efficacy of pre-existed SR (reference) molecule. Density functional theory has been adopted to computationally assess the optoelectronic features of fabricated molecules with the B3LYP/6-31G (d, p) level of theory. Several factors like charge transfer, light absorption, binding energy, dipole moment, and reorganization energy are studied. The frontier orbitals analysis revealed that all the newly developed molecules have less bandgap (ranging from 1.97 to 2.22 eV) than SR (2.23 eV). Similarly, these newly engineered molecules also revealed better light absorption by screening remarkable redshift from 676.23 to 789.28 nm than SR (673.83 nm) in chloroform. These molecules have remarkably reduced excitation energy ranging from 1.71 to 1.83 eV than SR 1.84 eV. The exclusive CT analysis is carried out via J61:SS8 complex because of the higher <i>V</i>_oc of SS8 (acceptor). Additionally, SS8 has shown the least energy loss, making it a strong contender to be used to develop improved OSCs. Because of the exceptionally improved characteristics, these newly engineered molecules (especially SS8) can be considered potential aspirants for fabricating proficient OSCs.</p>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"37 3","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138547966","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Study on the synthesis mechanism of pyrazoles via [3+2] cycloaddition reaction of diazocarbonyl compounds with enones without leaving groups","authors":"Guipeng Feng,&nbsp;Jie Meng,&nbsp;Shaohong Xu,&nbsp;Chenqian Wang,&nbsp;Xubin Yao,&nbsp;Xinzi Nie","doi":"10.1002/poc.4591","DOIUrl":"10.1002/poc.4591","url":null,"abstract":"<p>On the basis of the density functional theory (DFT), the process of cycloaddition reaction of diazocarbonyl compounds with enones without leaving groups to obtain pyrazoles was proposed. First, the diazocarbonyl compounds reacted with enones to offer the intermediates by cycloaddition reaction, which was captured of hydrogen of the intermediate by the base to offer the nonaromatic pyrazole intermediate, which then give the final product by oxidation and isomerization in the air. This protocol corrected the reaction mechanism that was proposed in the experimental section. The negative correlation between the yields of products with the charges of ADCH at the C1 position of enones was also founded, which was consistent with the experimental results. The protocol could provide theoretical guidance for designing more efficient cycloaddition reaction.</p>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"37 3","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138542229","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A comparative study on the cucurbit[7]uril-based indicator displacement assay for methyl Viologen. A theoretical and experimental perspective","authors":"Paulina Pavez,&nbsp;Angélica Fierro,&nbsp;Mabel Rojas,&nbsp;Luis García-Rio,&nbsp;Luis Dinamarca-Villarroel,&nbsp;Denis Fuentealba,&nbsp;Kevin Droguett,&nbsp;José G. Santos,&nbsp;Margarita E. Aliaga","doi":"10.1002/poc.4581","DOIUrl":"10.1002/poc.4581","url":null,"abstract":"<p>One colorimetric and one fluorescent-indicator displacement assay (IDA) were studied to assess their interaction with methyl viologen (MV), an herbicide commercially known as paraquat. The host–guest complexes formed by cucurbit[7]uril (CB[7]) and the 4-nitroaniline (NA) or Berberine (Be) dyes function as colorimetric- and fluorescent-IDA for MV, respectively. The CB[7]@NA and CB[7]@Be complexes were characterized by UV–vis, fluorescence spectroscopy, and dynamic simulations. Isothermal titration calorimetry (ITC) experiments and dynamic simulations were employed to obtain thermodynamic data for the formation of the 1:1 inclusion complexes. Finally, NA is proposed as a reference colorimetric dye for determining CB[7]-binding affinities using competitive host–guest titrations, and the fluorescent-IDA as the best assay proposed, as it exhibits a high binding constant, a good detection limit of 2.7 × 10⁻⁶ mol L^-1, good linearity in the range from 4 × 10⁻⁶ mol L^-1 to 3.5 × 10⁻⁵ mol L^-1, in aqueous solution.</p>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"37 7","pages":""},"PeriodicalIF":1.9,"publicationDate":"2023-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138527712","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Density functional theory for exploration of chemical reactivity: Successes and limitations","authors":"Tanmoy Chakraborty,&nbsp;Pratim K. Chattaraj","doi":"10.1002/poc.4589","DOIUrl":"https://doi.org/10.1002/poc.4589","url":null,"abstract":"&lt;p&gt;Computational modeling of molecules and their reactions are now essential components of the scientific research in chemistry.&lt;/p&gt;&lt;p&gt;Density functional theory (DFT) is among the most prominent and effective quantum mechanical theories of molecules and materials. Presently, it is commonly employed in calculations of band configuration of solids and binding energies of substances. It appears that these are the initial applications that are pertinent to sciences like biology and minerals, which are typically regarded as being further removed from quantum mechanics. DFT has been used to examine superconducting properties, particles at the forefront of intense laser impulses, relativistic influences in heavy molecules and nuclei of atoms, conventional fluids, and the magnetic characteristics of composites. DFT's adaptability is due to the flexibility of its basic principles and the range of possibilities with which they can be used. Despite this adaptability and applicability, the logical foundation of DFT is relatively inflexible.&lt;span&gt;&lt;sup&gt;1&lt;/sup&gt;&lt;/span&gt;&lt;/p&gt;&lt;p&gt;Through years of debating the many-body challenge, numerous effective strategies to address Schrödinger's equation have been created. For instance, the schematic perturbation concept, which relies on Feynman models and Green's functions, is utilized in physics, whereas configuration interaction (CI) approaches, which depend on methodical development in Slater determinants, are commonly employed in chemistry. There are also a variety of more specialized techniques. These approaches have a drawback in that they exert an enormous demand on computational resources, making it difficult to use them effectively on enormous and intricate systems. Here, DFT offers a strong substitute that may be less precise but is far more adaptable.&lt;span&gt;&lt;sup&gt;2&lt;/sup&gt;&lt;/span&gt; The 1998 award for the Nobel Prize in Chemistry, given to Walter Kohn,&lt;span&gt;&lt;sup&gt;3&lt;/sup&gt;&lt;/span&gt; the creator of DFT, and John Pople,&lt;span&gt;&lt;sup&gt;4&lt;/sup&gt;&lt;/span&gt; who played a key role in integrating DFT with computational chemistry, is indicative of the level to which DFT has made an impact on the scientific community of computational chemistry and physics. It has been utilized to determine a large portion of the information that is understood concerning the electronic, magnetic, and structural characteristics of substances.&lt;span&gt;&lt;sup&gt;5, 6&lt;/sup&gt;&lt;/span&gt;&lt;/p&gt;&lt;p&gt;A computational achievement was subsequently made possible by involving orbital parameters in the framework, as was done in the Kohn–Sham paradigm&lt;span&gt;&lt;sup&gt;7, 8&lt;/sup&gt;&lt;/span&gt; and in the beginning of 1995, DFT through the Kohn–Sham approaches in Pople's GAUSSIAN software tool&lt;span&gt;&lt;sup&gt;9&lt;/sup&gt;&lt;/span&gt; become the favored wave function computing package at those times as well as currently. In the end of 1970s and beginning of 1980s, eminent scientist R. G. Parr has established another form of DFT known as “conceptual DFT.”&lt;span&gt;&lt;sup&gt;10&lt;/sup&gt;&lt;/span&gt; In accordance with the notion that the density of el","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"36 12","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/poc.4589","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138468642","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Rational design of promising candidates for photoactive layer in polymer solar cells: Insights from computation","authors":"Renato P. Orenha,&nbsp;Salvador B. Ramos,&nbsp;Maria L. L. Natal,&nbsp;Márcio H. A. Gomes,&nbsp;Alvaro Muñoz-Castro,&nbsp;Letícia M. P. Madureira,&nbsp;Giovanni F. Caramori,&nbsp;Maurício J. Piotrowski,&nbsp;Renato L. T. Parreira","doi":"10.1002/poc.4586","DOIUrl":"10.1002/poc.4586","url":null,"abstract":"<p>The design of organic solar cells, OSCs, requests a more efficient configuration of photoactive layers composed of p-type (quinoxaline, Qx) and n-type (naphthalene diimide, NDI) semiconductors that enable light harvesting along with a high-power conversion efficiency. Here, Qx-(phenyl or Ph) and NDI structures have been modulated using both electron withdrawing (EWG) and electron donating (EDG) groups such as −F, −NHCOCH₃, −OCH₃, −OH, −CHO, −COOCH₃, −COOH, −CN, −SO₃H, and −NO₂, aiming to design an effective photoactive p-n layer. The HOMO-LUMO gap of Qx-Ph can be tuned to the visible light spectrum by the addition of EWG in the Qx ring (decreasing the LUMO energy) and by EDG in the Ph ring (increasing the HOMO energy). The analyzed complexes show key electronic properties in organic solar cells with large power conversion efficiency. Descriptive data analysis suggests that the magnitude of the non-covalent interactions in donor\u0000<span></span><math>\u0000 <mi>…</mi></math> acceptor (D\u0000<span></span><math>\u0000 <mi>…</mi></math> A) complexes is expected to play a role in the efficiency of OSCs. The results will contribute to a more effective design of the photoactive layer in OSCs.</p>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"37 7","pages":""},"PeriodicalIF":1.9,"publicationDate":"2023-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138527682","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Insight into acrolein activation by P/B intramolecular frustrated Lewis pairs","authors":"Swapan Sinha,&nbsp;Subhra Das,&nbsp;Santanab Giri","doi":"10.1002/poc.4588","DOIUrl":"10.1002/poc.4588","url":null,"abstract":"<p>The study investigates the reactivity of a cyclic five-membered intramolecular P/B frustrated Lewis pair towards acrolein through a cycloaddition reaction. Intrinsic reaction coordinate (IRC) calculations suggest the single-step mechanism. It has been observed that the cycloaddition reaction occurs through a concerted mechanism in both the presence and absence of the catalyst. Analysis of reaction force and reaction electronic flux provides valuable information about the total work required and electronic activity along the IRC. Additionally, natural bonding orbital (NBO) analyses enrich the understanding of the mechanism in terms of the electron transfer process during the chemical reaction.</p>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"37 2","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-11-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138527674","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Theoretical study on oxidation mechanism of fluorescent probe, coumarin-7-pinacolboronate by various reactive oxygen species","authors":"Yujie Guo,&nbsp;Yan Leng,&nbsp;Hongbo Liu,&nbsp;Chun-Gang Min,&nbsp;Ai-Min Ren,&nbsp;Qinhong Yin","doi":"10.1002/poc.4585","DOIUrl":"10.1002/poc.4585","url":null,"abstract":"<p>Hydrogen peroxide (H₂O₂) as relatively stable reactive oxygen species gains considerable attention because it can regulate physiological and pathological processes. In order to better detect H₂O₂, fluorescent probes were widely applied. Over the past 20 years, a great deal of boronate-based fluorescent molecular probes appeared due to relatively simple oxidation reaction. However, the reaction mechanisms that boronate derivatives were converted into fluorescent product by H₂O₂ are poorly studied. In this paper, taking coumarin-7-pinacolboronate (CBU) as an example, the oxidation mechanism of boronate-based probes by various reactive oxygen species was studied by theoretical calculations. The results found that (1) the chemical reaction mechanisms are nearly identical for the reactions of CBU with hydrogen peroxide, hypochlorous acid, peroxynitrite, and tyrosine hydroperoxide, respectively. (2) There is not radical intermediate during the reaction. (3) The different reactive oxygen species has a strong influence on rate limiting step and reaction rate.</p>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":"37 2","pages":""},"PeriodicalIF":1.8,"publicationDate":"2023-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138527672","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}