Journal of pharmaceutical and biomedical analysis最新文献

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Method validation and determination of pesticides in Mikania glomerta Spreng tincture by direct injection and UPLC-MS/MS analysis 采用直接进样和 UPLC-MS/MS 分析方法验证和测定薇甘菊酊剂中的农药。
IF 3.1 3区 医学
Journal of pharmaceutical and biomedical analysis Pub Date : 2024-10-16 DOI: 10.1016/j.jpba.2024.116527
Thais Morais de Brito , Angélica Castanheira de Oliveira , Fabio Coelho Amendoeira , Lucia Helena Pinto Bastos , Maria Helena Wohlers Morelli Cardoso , Leandro Machado Rocha , Armi Wanderley da Nóbrega , Fausto Klabund Ferraris
{"title":"Method validation and determination of pesticides in Mikania glomerta Spreng tincture by direct injection and UPLC-MS/MS analysis","authors":"Thais Morais de Brito ,&nbsp;Angélica Castanheira de Oliveira ,&nbsp;Fabio Coelho Amendoeira ,&nbsp;Lucia Helena Pinto Bastos ,&nbsp;Maria Helena Wohlers Morelli Cardoso ,&nbsp;Leandro Machado Rocha ,&nbsp;Armi Wanderley da Nóbrega ,&nbsp;Fausto Klabund Ferraris","doi":"10.1016/j.jpba.2024.116527","DOIUrl":"10.1016/j.jpba.2024.116527","url":null,"abstract":"<div><div>Over the past two decades, concerns have arisen about the efficacy and safety of medicinal plants, highlighting good agricultural practices and quality control. This study aimed to validate a multi-residue analysis method for detecting 268 pesticides in Mikania glomerata tincture, using direct injection and UPLC-MS/MS, per SANTE guidelines. The validation of the method involved evaluating the linearity of analytical curves in terms of the determination coefficient r2 and residuals (%), as well as the limits of quantification (LOQ), matrix effects, precision (expressed as the coefficient of variation, CV), and accuracy (determined as the recovery percentage). The parameters and acceptance criteria were assessed based on SANTE guidelines. The method was then applied to analyse commercial samples of <em>M. glomerata</em> tincture, and traces of carbendazim and dimethomorph were detected. This study underscores the need for regulatory measures to enhance agricultural practices, thereby ensuring the safety and efficacy of medicinal plants.</div></div>","PeriodicalId":16685,"journal":{"name":"Journal of pharmaceutical and biomedical analysis","volume":"252 ","pages":"Article 116527"},"PeriodicalIF":3.1,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142468218","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LC-HRMS-based global metabolomics profiling unravels the distinct metabolic signature of lapatinib-resistant and trastuzumab-resistant HER2+ breast cancer cells 基于 LC-HRMS 的全局代谢组学分析揭示了拉帕替尼耐药和曲妥珠单抗耐药 HER2+ 乳腺癌细胞的独特代谢特征。
IF 3.1 3区 医学
Journal of pharmaceutical and biomedical analysis Pub Date : 2024-10-16 DOI: 10.1016/j.jpba.2024.116528
Adam Hermawan , Anjar Windarsih , Dyaningtyas Dewi Pamungkas Putri , Nurul Fatimah
{"title":"LC-HRMS-based global metabolomics profiling unravels the distinct metabolic signature of lapatinib-resistant and trastuzumab-resistant HER2+ breast cancer cells","authors":"Adam Hermawan ,&nbsp;Anjar Windarsih ,&nbsp;Dyaningtyas Dewi Pamungkas Putri ,&nbsp;Nurul Fatimah","doi":"10.1016/j.jpba.2024.116528","DOIUrl":"10.1016/j.jpba.2024.116528","url":null,"abstract":"<div><div>The effectiveness of lapatinib (LAP) and trastuzumab (TRZ), the first-line therapies for HER2<sup>+</sup> breast cancer, has been limited owing to the development of acquired resistance in patients with HER2<sup>+</sup>. This study aimed to investigate the alterations in metabolic signatures in LAP-resistant HCC1954 and TRZ-resistant HCC1954 and pathways in human HER2<sup>+</sup> breast cancer cells using liquid chromatography–high-resolution mass spectrometry (LC-HRMS) and enrichment analysis. The HCC1954 parental cells were sequentially treated 13 rounds with LAP or TRZ to develop resistant cells and then tested for their cytotoxicity using the MTT assay. Metabolites were prepared from HCC1954 parental (MBXWT), HCC1954-LAP (MBXLAP), and HCC1954-TRZ (MBXTRZ) cells prior to LC-HRMS, chemometric, enrichment, and joint pathway analyses. LAP- and TRZ-resistant cells were successfully developed from HCC1954, and 29 and 17 differentially expressed metabolites (DEMs) were identified between MBXWT-MBXLAP and MBXWT-MBXTRZ, respectively. The analysis of DEMs between MBXWT and MBXLAP revealed significant enrichment in D-amino acid metabolism, while MBXWT and MBXTRZ identified valine, leucine, isoleucine biosynthesis, ascorbate, and aldarate metabolism. Joint pathway enrichment analysis of LAP-resistant DEMs and differentially expressed genes (DEGs) showed enrichment in glutathione metabolism, while that of TRZ-resistance and DEGs showed enrichment in carbohydrate metabolism, namely pentose and glucuronate interconversions, starch and sucrose metabolism, and galactose metabolism. The findings from this study indicate considerable metabolic changes in LAP- and TRZ-resistant HCC1954 cells, which are crucial for understanding the resistance mechanisms and developing strategies to overcome these problems.</div></div>","PeriodicalId":16685,"journal":{"name":"Journal of pharmaceutical and biomedical analysis","volume":"253 ","pages":"Article 116528"},"PeriodicalIF":3.1,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142502458","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Raman spectroscopy for monitoring free sulfhydryl formation during monoclonal antibody manufacturing 利用拉曼光谱监测单克隆抗体生产过程中游离巯基的形成。
IF 3.1 3区 医学
Journal of pharmaceutical and biomedical analysis Pub Date : 2024-10-16 DOI: 10.1016/j.jpba.2024.116530
Zhenshu Wang , Andrew Hsieh , Patricia Rose , George Zhou , Sonja Battle , Kelly Raymond , Monica Haley , Aaron Cote , Sandra Bennun , Sanjeev Ahuja
{"title":"Raman spectroscopy for monitoring free sulfhydryl formation during monoclonal antibody manufacturing","authors":"Zhenshu Wang ,&nbsp;Andrew Hsieh ,&nbsp;Patricia Rose ,&nbsp;George Zhou ,&nbsp;Sonja Battle ,&nbsp;Kelly Raymond ,&nbsp;Monica Haley ,&nbsp;Aaron Cote ,&nbsp;Sandra Bennun ,&nbsp;Sanjeev Ahuja","doi":"10.1016/j.jpba.2024.116530","DOIUrl":"10.1016/j.jpba.2024.116530","url":null,"abstract":"<div><div>During production, harvested cell culture fluid (HCCF) can degrade due to reductases breaking interchain disulfide bonds, forming low molecular weight (LMW) impurities that contain free sulfhydryl and high molecular weight (HMW) impurities through disulfide shuffling. Thus, detecting and quantifying the free sulfhydryl increase in HCCF is critical. Herein, Raman spectroscopy is implemented as a process analytical technology, and multivariate data analysis is applied to characterize and quantify sulfhydryl formation in HCCF with disulfide-containing indicator molecules. Raman spectra qualitatively probe the presence or absence of disulfide bond breakage in antibodies, consistent with offline non-reduced capillary electrophoresis sodium dodecyl sulfate results. Between two antibodies studied, mAb A was identified for a higher risk of antibody reduction where sulfhydryl formation was observed within 16 h, while mAb B did not show similar concerns even after 1 week. The offline measurement of redox potential is below –100 mV in HCCF for mAb A, while the stable mAb B HCCF shows redox potentials above +20 mV. A multivariate partial least squares (PLS) model for quantification is developed using an offline free sulfhydryl assay, applying Raman spectra to predict free sulfhydryl concentration with high accuracy (R<sup>2</sup> &gt; 0.98) and expected mean error of 0.677 mM from the offline Ellman’s Assay. This work confirms the use of Raman PAT to monitor real-time disulfide reduction, enabling improvements to process understanding and product quality.</div></div>","PeriodicalId":16685,"journal":{"name":"Journal of pharmaceutical and biomedical analysis","volume":"252 ","pages":"Article 116530"},"PeriodicalIF":3.1,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142502444","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterization of adeno-associated virus capsid proteins using denaturing size-exclusion chromatography coupled with mass spectrometry 利用变性尺寸排阻色谱与质谱联用技术表征腺相关病毒荚膜蛋白质。
IF 3.1 3区 医学
Journal of pharmaceutical and biomedical analysis Pub Date : 2024-10-16 DOI: 10.1016/j.jpba.2024.116524
Timothy N. Tiambeng, Yuetian Yan, Shailin K. Patel, Victoria C. Cotham, Shunhai Wang, Ning Li
{"title":"Characterization of adeno-associated virus capsid proteins using denaturing size-exclusion chromatography coupled with mass spectrometry","authors":"Timothy N. Tiambeng,&nbsp;Yuetian Yan,&nbsp;Shailin K. Patel,&nbsp;Victoria C. Cotham,&nbsp;Shunhai Wang,&nbsp;Ning Li","doi":"10.1016/j.jpba.2024.116524","DOIUrl":"10.1016/j.jpba.2024.116524","url":null,"abstract":"<div><div>Recombinant adeno-associated viruses (AAVs) are a highly effective platform for gene delivery for the treatment of many human diseases. Characterization of AAV viral protein attributes (VP), such as serotype identity, VP stoichiometry, and VP post-translational modifications, is essential to ensure product and process consistency. While size-exclusion chromatography (SEC) coupled with mass spectrometry (MS) is commonly used in the biopharmaceutical industry for analyzing protein therapeutics, its application to intact AAV VP components has not gained traction, presumably due to difficulties in achieving adequate resolution of VP(1−3) monomers. Herein, we describe the development of a denaturing SEC method and optimization of SEC parameters, including stationary phase pore size, column temperature, and mobile phase composition, to achieve effective chromatographic separation of VP(1−3). We demonstrate that an optimized dSEC-MS method featuring MS-compatible formic acid, can effectively separate VP(1−3) across AAV1, 2, 5, 6, 8, and 9 serotypes using a single column and mobile phase condition. A case study was included to showcase successful application of the dSEC-MS method in analyzing changes across different AAV production processes, yielding similar conclusions to an orthogonal approach, such as hydrophilic interaction chromatography (HILIC)- MS. Additionally, dSEC integrated with fluorescence (FLR) and ultraviolet (UV) detection can be used to semi-quantitatively identify both AAV DNA and VP components from empty and full AAV samples. Overall, this robust and MS-friendly methodological advancement could greatly streamline the development and analytical quality control processes for AAV-based gene therapies, providing a highly sensitive method for intact VP characterization.</div></div>","PeriodicalId":16685,"journal":{"name":"Journal of pharmaceutical and biomedical analysis","volume":"253 ","pages":"Article 116524"},"PeriodicalIF":3.1,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142502447","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Low polarity fraction of Radix Bupleuri alleviates chronic unpredictable mild stress-induced depression in rats through FXR modulating bile acid homeostasis in liver, gut, and brain 柴胡的低极性部分通过 FXR 调节肝脏、肠道和大脑中的胆汁酸平衡,缓解大鼠由慢性不可预知的轻度应激诱发的抑郁症
IF 3.1 3区 医学
Journal of pharmaceutical and biomedical analysis Pub Date : 2024-10-15 DOI: 10.1016/j.jpba.2024.116523
Weiyu Wang , Xue Bai , Jing Li , Shuheng Wang , Fang Zhao , Xuemei Qin , Xiaoxia Gao
{"title":"Low polarity fraction of Radix Bupleuri alleviates chronic unpredictable mild stress-induced depression in rats through FXR modulating bile acid homeostasis in liver, gut, and brain","authors":"Weiyu Wang ,&nbsp;Xue Bai ,&nbsp;Jing Li ,&nbsp;Shuheng Wang ,&nbsp;Fang Zhao ,&nbsp;Xuemei Qin ,&nbsp;Xiaoxia Gao","doi":"10.1016/j.jpba.2024.116523","DOIUrl":"10.1016/j.jpba.2024.116523","url":null,"abstract":"<div><div>Radix Bupleuri (BR, <em>Bupleurum chinense</em> DC.) is a well-known traditional Chinese medicine (TCM) known for its effects on soothing the liver and alleviating depression, and is widely used in clinical settings to manage depressive symptoms. A dosage of 12.5 g crude drug/kg/d of the low-polarity fraction of Radix Bupleuri (LBR) demonstrated effectiveness in treating depression in our previous study. However, the mechanism through which BR ameliorates depression remains unclear. This study aimed to explore the polar fractions of BR and their mechanisms of action in the treatment of depression. Chronic unpredictable mild stress (CUMS) rats were continuously administered BR by oral gavage for 4 weeks. Behavioral and biochemical indicators were evaluated to assess the antidepressant effects of LBR, and transcriptomics was used to explore the relevant pathways. In addition, pseudo-targeted bile acid (BA) metabonomics was used to quantify the BA profiles. Molecular biology techniques have been used to investigate the underlying mechanisms. LBR serves as a more effective active fraction with antidepressant activity. Intervention with LBR, which is characterized by a clearly defined chemical composition, significantly ameliorated depression-like behavior and biochemical indicators in rats subjected to CUMS. Notably, marked improvements were observed in the levels of total bile acids (TBAs) in the blood, liver, and ileum. Mechanistically, liver transcriptome analysis suggested that bile secretion may be a crucial pathway for alleviating depression after LBR treatment. Ultra-high performance liquid chromatography-mass spectrometry (UPLC-MS) BA metabonomics indicated that TCA, β-MCA, γ-MCA, Tβ-MCA, and UDCA in the liver, Tβ-MCA, TCA, βMCA, GHDCA, and GLCA in the ileum, and β-MCA, CA, and DCA in the hippocampus were the potential therapeutic targets. In addition, molecular biology experiments showed that LBR exerts antidepressant effects by regulating the FXR/SHP/CYP7A1 pathway in the liver, the FXR/FGF15/ASBT pathway in the ileum, and the FXR/CREB/BDNF pathway in the hippocampus. In conclusion, LBR attenuated depression by moderating BA homeostasis through FXR and related genes within the liver-gut-brain axis.</div></div>","PeriodicalId":16685,"journal":{"name":"Journal of pharmaceutical and biomedical analysis","volume":"253 ","pages":"Article 116523"},"PeriodicalIF":3.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142531557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Proteomic and network pharmacology analyses reveal S100A8 as the anti-inflammatory target of Yunpi Jiedu Tongluo Qushi Granule in the treatment of rheumatoid arthritis 蛋白质组学和网络药理学分析揭示了S100A8是云皮解毒通络芪颗粒治疗类风湿性关节炎的抗炎靶点。
IF 3.1 3区 医学
Journal of pharmaceutical and biomedical analysis Pub Date : 2024-10-15 DOI: 10.1016/j.jpba.2024.116522
Chenyi Yu , Honglv Jiang , Meijiao Wang , Yi Zhang , Zhijun Xie , Yajun Wang , Guoqiang Xu
{"title":"Proteomic and network pharmacology analyses reveal S100A8 as the anti-inflammatory target of Yunpi Jiedu Tongluo Qushi Granule in the treatment of rheumatoid arthritis","authors":"Chenyi Yu ,&nbsp;Honglv Jiang ,&nbsp;Meijiao Wang ,&nbsp;Yi Zhang ,&nbsp;Zhijun Xie ,&nbsp;Yajun Wang ,&nbsp;Guoqiang Xu","doi":"10.1016/j.jpba.2024.116522","DOIUrl":"10.1016/j.jpba.2024.116522","url":null,"abstract":"<div><div>Rheumatoid arthritis (RA) is a chronic systemic autoimmune disease characterized by synovial inflammation. RA has a global prevalence between 0.5 % and 1 % although its pathogenesis is not completely understood. Chinese herbal medicine such as Yunpi Jiedu Tongluo Qushi Granule (YJTQG) is one of the treatments for RA. However, the underlying mechanism of action is unclear. Here, analysis of clinical samples reveals that YJTQG can reduce the inflammatory factors and alleviate the symptoms of RA patients. Quantitative proteomic analysis of serum proteomes of RA patients identifies the potential therapeutic targets of YJTQG. We use biochemical experiments to validate several differentially expressed proteins, discover S100A8 as a possible therapeutic target of YJTQG, and analyze the correlation between S100A8 and several known RA biomarkers. Network pharmacology analysis discloses COX1/2 and NOS2 as potential targets of key compounds in YJTQG and protein-protein interaction network analysis reveals TNFα, IL-6, and STAT3 as possible core targets of YJTQG. Bioinformatic and patient sample analyses indicate that YJTQG may reduce S100A8 expression by suppressing its transcription. Mechanistically, we find that kaempferol and quercetin in YJTQG may reduce the expression of S100A8 by inhibiting the phosphorylation, nuclear translocation, and transcriptional activity of p65 in the lipopolysaccharide-stimulated RAW264.7 cells. Therefore, our work demonstrates that S100A8 is a potential therapeutic target of YJTQG for RA, which may provide a new direction for developing new treatments for RA patients.</div></div>","PeriodicalId":16685,"journal":{"name":"Journal of pharmaceutical and biomedical analysis","volume":"252 ","pages":"Article 116522"},"PeriodicalIF":3.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142502443","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of Jacalin lectin sorbents for the extraction of the human chorionic gonadotropin glycoforms prior to analysis by nano liquid chromatography-high resolution mass spectrometry 在采用纳米液相色谱-高分辨质谱法进行分析之前,对用于提取人绒毛膜促性腺激素糖形的贾卡林凝集素吸附剂进行评估。
IF 3.1 3区 医学
Journal of pharmaceutical and biomedical analysis Pub Date : 2024-10-15 DOI: 10.1016/j.jpba.2024.116525
Anastasia Goumenou , Christophe Chendo , Audrey Combès , Thierry Fournier , Valérie Pichon , Nathalie Delaunay
{"title":"Evaluation of Jacalin lectin sorbents for the extraction of the human chorionic gonadotropin glycoforms prior to analysis by nano liquid chromatography-high resolution mass spectrometry","authors":"Anastasia Goumenou ,&nbsp;Christophe Chendo ,&nbsp;Audrey Combès ,&nbsp;Thierry Fournier ,&nbsp;Valérie Pichon ,&nbsp;Nathalie Delaunay","doi":"10.1016/j.jpba.2024.116525","DOIUrl":"10.1016/j.jpba.2024.116525","url":null,"abstract":"<div><div>Human chorionic gonadotropin (hCG) is a dimeric, highly glycosylated hormone with a total of 4 N- and 4 O-glycosylation sites in its two subunits, hCGα and hCGβ. Recently, we developed a novel nano liquid chromatography coupled to high resolution mass spectrometry (nanoLC-HRMS) method for the analysis and thus the detection of the intact glycoforms of hCG. Here, a sorbent functionalized with the Jacalin lectin was evaluated in solid-phase extraction (SPE) for its potential to fractionate the hCG glycoforms prior to their nanoLC-HRMS analysis at the intact level, which may facilitate the detection of low-abundance glycoforms and may lead to a more detailed characterization of the hormone glycosylation. A commercial sorbent based on Jacalin immobilized on Sepharose and having a lectin density of 4.5 mg per ml of gel was selected to carry out SPE and its capacity was estimated to be of some tens of μg of hCG per ml of lectin sorbent. Next, the SPE protocol was modified to improve the extraction recoveries. Especially, it was noticed that an extensive pre-conditioning procedure prior to the first use of a cartridge was necessary to remove the residual non-grafted lectins. Indeed, if non-grafted lectins are not eliminated, they may bind a part of hCG glycoforms preventing their retention by the sorbent, leading to low extraction recoveries (around 10 %). With the extensive pre-conditioning procedure, the average extraction recoveries for both hCGα and hCGβ glycoforms were about 50 %, with either recombinant or urinary hCG. Qualitatively, the fractionation of hCG glycoforms between the washing and elution fractions was achieved with the urinary hCG sample by determining the number of glycoforms detected in each fraction. It appears that 12 hCGα glycoforms have a low affinity (detected only in the washing fraction), 1 a low-medium affinity (detected in washing and elution 1 fractions), 16 a medium affinity (detected in washing, elution 1 and 2 fractions), and 12 a high affinity (detected only in elution 1 and 2 fractions). For the hCGβ glycoforms, similarly, 3 have a low affinity and 12 a low-medium affinity. Additionally, the 3 hCGβ glycoforms were detected better. A different behavior was observed with the recombinant hCG sample, which indicates glycosylation differences between the two hCG samples. This shows the potential of lectin-based affinity fractionation before nanoLC-HRMS analysis to better characterize the glycosylation state of hCG at the intact level.</div></div>","PeriodicalId":16685,"journal":{"name":"Journal of pharmaceutical and biomedical analysis","volume":"252 ","pages":"Article 116525"},"PeriodicalIF":3.1,"publicationDate":"2024-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142502441","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Optimization of metabolomics pretreatment method of cholangiocarcinoma cells based on ultrahigh performance liquid chromatography coupled with mass spectrometry 优化基于超高效液相色谱-质谱联用技术的胆管癌细胞代谢组学预处理方法
IF 3.1 3区 医学
Journal of pharmaceutical and biomedical analysis Pub Date : 2024-10-10 DOI: 10.1016/j.jpba.2024.116508
Xiaoyu Ma , Yongping He , Diya Lv , Xiaofei Chen , Zhanying Hong , Yifeng Chai , Yue Liu
{"title":"Optimization of metabolomics pretreatment method of cholangiocarcinoma cells based on ultrahigh performance liquid chromatography coupled with mass spectrometry","authors":"Xiaoyu Ma ,&nbsp;Yongping He ,&nbsp;Diya Lv ,&nbsp;Xiaofei Chen ,&nbsp;Zhanying Hong ,&nbsp;Yifeng Chai ,&nbsp;Yue Liu","doi":"10.1016/j.jpba.2024.116508","DOIUrl":"10.1016/j.jpba.2024.116508","url":null,"abstract":"<div><div>Metabolomics intends to maximize the quantity of available metabolites for the global metabolome, which largely depends on sample pretreatment protocols. However, there are few studies that comprehensively examined the effects of extraction and reconstitution solvents on metabolome coverage of adherent mammalian cells. In this study, the human cholangiocarcinoma TFK-1 cells were chosen as a cell model, and eight extraction solvents and five reconstitution solvents were used for the pretreatment based on ultrahigh performance liquid chromatography coupled with mass spectrometry (UPLC/MS). The coverage, reproducibility, and stability of the data were norms to evaluate the effectiveness of different extraction solvents and reconstitution solvents. Based on the number of metabolites, the mean Euclidean distance (ED<sub>MEAN</sub>) in the principal component analysis (PCA) 3D score plots and the relative standard deviation (RSD) distribution of metabolites, it was demonstrated that MeOH-CHCl<sub>3</sub>-H<sub>2</sub>O (8:1:1, v/v/v) was the optimal extraction solvent and MeOH-H<sub>2</sub>O (1:1, v/v) or H<sub>2</sub>O was superior to other reconstitution solvents for RP column analysis, and the extraction solvent MeOH-ACN-H<sub>2</sub>O (2:2:1, v/v/v) and the reconstitution solvents ACN-H<sub>2</sub>O (4:1, v/v) or MeOH-H<sub>2</sub>O (1:1, v/v) provide the best performance for HILIC column analysis. The optimized pretreatment methods explored in this study expand the coverage of polar and non-polar metabolites and improve the reproducibility and stability of the metabolic data, which can be applied to UPLC/MS-based global metabolomics study on cholangiocarcinoma cells, potentially providing better extraction solvents and reconstitution solvents for other adherent mammalian cells with similar chemical and physical properties.</div></div>","PeriodicalId":16685,"journal":{"name":"Journal of pharmaceutical and biomedical analysis","volume":"252 ","pages":"Article 116508"},"PeriodicalIF":3.1,"publicationDate":"2024-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142468219","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Screening and verification of target and molecular docking study of Pien-Tze-Huang in ameliorating alcoholic liver injury in rats 片仔癀改善大鼠酒精性肝损伤的靶点筛选与验证及分子对接研究
IF 3.1 3区 医学
Journal of pharmaceutical and biomedical analysis Pub Date : 2024-10-10 DOI: 10.1016/j.jpba.2024.116517
Shouer Lin , Pingping Wu , Youjia Wu , Liying Huang , Lingyi Huang
{"title":"Screening and verification of target and molecular docking study of Pien-Tze-Huang in ameliorating alcoholic liver injury in rats","authors":"Shouer Lin ,&nbsp;Pingping Wu ,&nbsp;Youjia Wu ,&nbsp;Liying Huang ,&nbsp;Lingyi Huang","doi":"10.1016/j.jpba.2024.116517","DOIUrl":"10.1016/j.jpba.2024.116517","url":null,"abstract":"<div><div>Pien-Tze-Huang (PTH) is a famous traditional Chinese patent medicine with excellent liver-protection effects. However, the mechanism of hepatoprotective action has not yet been entirely elucidated. This study aimed to elucidate the protective mechanism of PTH against alcoholic liver injury in rats from key targets. An alcoholic liver disease (ALD) model in male rats was established, and the rats were treated with PTH given at a prescribed dosage. The hepatoprotective components of PTH and their exposure in the serum of PTH-treated rats were systematically identified. Quantitative proteomics was employed to find differentially expressed proteins. The key targets were screened by bioinformatic analysis and further validated by Western blotting (WB) and molecular docking. Ursodeoxycholic acid, notoginsenoside R1, gypenoside XVII, ginsenoside Rb1, and ginsenoside Re may be important active hepatoprotective components of PTH. A total of 53 differentially expressed proteins that were reversed by PTH were successfully identified in rat liver tissues. Retinol metabolism and the PPAR signaling pathway may play a key role in ameliorating alcohol-induced liver injury after PTH intervention. In particular, protein CYP2, FATCD36, FATP, ACS, and CPT-2 in these two pathways may be key targets for the therapeutic effects of PTH, with the same reversal observed by WB. Molecular docking analysis further revealed that these five proteins exhibited generally stable binding with the five main components of PTH. The hepatoprotective effects of PTH may be exerted through the modulation of key targets within pivotal pathways. This work pioneered a comprehensive screening of the active compounds in PTH and elucidated the mechanisms and targets of their protective effects against alcoholic liver injury, providing a reference for the broader clinical application of PTH.</div></div>","PeriodicalId":16685,"journal":{"name":"Journal of pharmaceutical and biomedical analysis","volume":"253 ","pages":"Article 116517"},"PeriodicalIF":3.1,"publicationDate":"2024-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142502478","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Serum untargeted metabolomics analysis of mice after myocardial infarction affected by qiliqiangxin capsule 芪蛭降糖胶囊对心肌梗死后小鼠血清非靶向代谢组学分析
IF 3.1 3区 医学
Journal of pharmaceutical and biomedical analysis Pub Date : 2024-10-10 DOI: 10.1016/j.jpba.2024.116516
Yingfei Wang , Shijiao Zhang , Yingying Ge , Chunxia Miao , Benrong Liu , Tao Yang , Xiangjun Qiu , Wenchao Ou
{"title":"Serum untargeted metabolomics analysis of mice after myocardial infarction affected by qiliqiangxin capsule","authors":"Yingfei Wang ,&nbsp;Shijiao Zhang ,&nbsp;Yingying Ge ,&nbsp;Chunxia Miao ,&nbsp;Benrong Liu ,&nbsp;Tao Yang ,&nbsp;Xiangjun Qiu ,&nbsp;Wenchao Ou","doi":"10.1016/j.jpba.2024.116516","DOIUrl":"10.1016/j.jpba.2024.116516","url":null,"abstract":"<div><div><em>Qiliqiangxin</em> (QLQX) capsule consists of 11 herbs, namely Huang qi (<em>astragalus membranaceus</em>), Ren shen (g<em>inseng</em>), Fu zi (<em>radix aconiti carmichaeli</em>)<em>,</em> Dan shen (<em>salvia miltiorrhiza</em>), Ting li zi (<em>lepidium seed</em>), Ze xie (<em>rhizoma alismatis</em>), Yu zhu (<em>radix</em> polygonati of<em>ficinalis</em>), Gui zhi (<em>cassia twig</em>), Hong hua (<em>carthamus tinctorious</em>), Xiang jia Pi (<em>cortex periploca</em>e), Chen Pi (<em>pericarpium citri reticulatae</em>), and it is a standardized commercial formula designed to address yang deficiency and to restore the balance of qi in the heart. QLQX is also known to invigorate the blood and promote the circulation of the blood and to promote the use of fluids to relieve water retention and edema, and can be used in cardiovascular diseases such as mild to moderate congestive heart failure resulting from coronary artery disease and hypertension. The further research on the effect of QLQX on cardiac function in mice after myocardial infarction was manipulated. QLQX was given to mice in myocardial infarction model by gavage with appropriate dosage and the samples were analyzed at the end of the animal experiments through the UHPLC-Q-Exactive LC-MS. The liquid mass spectrometry was used to collect and followed by further analysis of the corresponding metabolites and metabolic pathways using metabolomics analysis. As a result, 9 differential metabolites were identified, with 15 being up-regulated and 4 down-regulated following intervention with QLQX. Then the metabolic pathways by KEGG enrichment pathway bubble diagram was analyzed, and 4 metabolic pathways were obtained, and combined with the metabolites that had been screened and analyzed together, finally the two differential metabolites, 2,5-Dihydroxybenzenesulfonic Acid and o-Cresol sulfate were found. The Glycerophospholipid metabolism pathway was closely related to the remaining seven differential metabolites, and the pathway might be an important pathway related to the effects of QLQX on cardiac function in mice.</div></div>","PeriodicalId":16685,"journal":{"name":"Journal of pharmaceutical and biomedical analysis","volume":"252 ","pages":"Article 116516"},"PeriodicalIF":3.1,"publicationDate":"2024-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142432582","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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