Journal of magnetic resonance最新文献

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Restriction-induced time-dependent transcytolemmal water exchange: Revisiting the Kӓrger exchange model 限制诱导的时间依赖性跨细胞膜水交换:重新审视Kӓrger交换模型
IF 2 3区 化学
Journal of magnetic resonance Pub Date : 2024-08-30 DOI: 10.1016/j.jmr.2024.107760
Diwei Shi , Fan Liu , Sisi Li , Li Chen , Xiaoyu Jiang , John C. Gore , Quanshui Zheng , Hua Guo , Junzhong Xu
{"title":"Restriction-induced time-dependent transcytolemmal water exchange: Revisiting the Kӓrger exchange model","authors":"Diwei Shi ,&nbsp;Fan Liu ,&nbsp;Sisi Li ,&nbsp;Li Chen ,&nbsp;Xiaoyu Jiang ,&nbsp;John C. Gore ,&nbsp;Quanshui Zheng ,&nbsp;Hua Guo ,&nbsp;Junzhong Xu","doi":"10.1016/j.jmr.2024.107760","DOIUrl":"10.1016/j.jmr.2024.107760","url":null,"abstract":"<div><p>The Kӓrger model and its derivatives have been widely used to incorporate transcytolemmal water exchange rate, an essential characteristic of living cells, into analyses of diffusion MRI (dMRI) signals from tissues. The Kӓrger model consists of two homogeneous exchanging components coupled by an exchange rate constant and assumes measurements are made with sufficiently long diffusion time and slow water exchange. Despite successful applications, it remains unclear whether these assumptions are generally valid for practical dMRI sequences and biological tissues. In particular, barrier-induced restrictions to diffusion produce inhomogeneous magnetization distributions in relatively large-sized compartments such as cancer cells, violating the above assumptions. The effects of this inhomogeneity are usually overlooked. We performed computer simulations to quantify how restriction effects, which in images produce edge enhancements at compartment boundaries, influence different variants of the Kӓrger-model. The results show that the edge enhancement effect will produce larger, time-dependent estimates of exchange rates in e.g., tumors with relatively large cell sizes (&gt;10 μm), resulting in overestimations of water exchange as previously reported. Moreover, stronger diffusion gradients, longer diffusion gradient durations, and larger cell sizes, all cause more pronounced edge enhancement effects. This helps us to better understand the feasibility of the Kärger model in estimating water exchange in different tissue types and provides useful guidance on signal acquisition methods that may mitigate the edge enhancement effect. This work also indicates the need to correct the overestimated transcytolemmal water exchange rates obtained assuming the Kärger-model.</p></div>","PeriodicalId":16267,"journal":{"name":"Journal of magnetic resonance","volume":"367 ","pages":"Article 107760"},"PeriodicalIF":2.0,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1090780724001447/pdfft?md5=f8473d8afcad5e5d4a4d7cea3da4a920&pid=1-s2.0-S1090780724001447-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142147208","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The NOAH HSQC-COSY module revisited: A theoretical and practical comparison of pulse sequences 重新审视 NOAH HSQC-COSY 模块:脉冲序列的理论与实践比较
IF 2 3区 化学
Journal of magnetic resonance Pub Date : 2024-08-24 DOI: 10.1016/j.jmr.2024.107759
Jonathan R.J. Yong , Ēriks Kupče , Tim D.W. Claridge
{"title":"The NOAH HSQC-COSY module revisited: A theoretical and practical comparison of pulse sequences","authors":"Jonathan R.J. Yong ,&nbsp;Ēriks Kupče ,&nbsp;Tim D.W. Claridge","doi":"10.1016/j.jmr.2024.107759","DOIUrl":"10.1016/j.jmr.2024.107759","url":null,"abstract":"<div><p>NMR supersequences, as exemplified by the NOAH (NMR by Ordered Acquisition using <sup>1</sup>H detection) technique, are a powerful way of acquiring multiple 2D data sets in much shorter durations. This is accomplished through targeted excitation and detection of the magnetisation belonging to specific isotopologues (‘magnetisation pools’). Separately, the HSQC-COSY experiment has recently seen an increase in popularity due to the high signal dispersion in the indirect dimension and the removal of ambiguity traditionally associated with HSQC-TOCSY experiments. Here, we describe how the HSQC-COSY experiment can be integrated as a ‘module’ within NOAH supersequences. The benefits and drawbacks of several different pulse sequence implementations are discussed, with a particular focus on how sensitivities of other modules in the same supersequence are affected.</p></div>","PeriodicalId":16267,"journal":{"name":"Journal of magnetic resonance","volume":"367 ","pages":"Article 107759"},"PeriodicalIF":2.0,"publicationDate":"2024-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1090780724001435/pdfft?md5=67f79ba4d83ba494e82823eaf06fb5d5&pid=1-s2.0-S1090780724001435-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142095148","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Towards shorter composite 180° refocusing pulses for NMR 为 NMR 开发更短的 180° 复合再聚焦脉冲
IF 2 3区 化学
Journal of magnetic resonance Pub Date : 2024-08-19 DOI: 10.1016/j.jmr.2024.107758
Stephen Wimperis
{"title":"Towards shorter composite 180° refocusing pulses for NMR","authors":"Stephen Wimperis","doi":"10.1016/j.jmr.2024.107758","DOIUrl":"10.1016/j.jmr.2024.107758","url":null,"abstract":"<div><p>Novel composite 180° pulses are designed for use in nuclear magnetic resonance (NMR) and verified experimentally using solution-state <sup>1</sup>H NMR spectroscopy. Rather than being constructed from 180° pulses (as in much recent work), the new composite pulses are constructed from 90° pulses, with the aim of finding sequences that are shorter overall than existing equivalents. The primary (but not exclusive) focus is on composite pulses that are dual compensated – simultaneously broadband with respect to both inhomogeneity of the radiofrequency field and resonance offset – and have antisymmetric phase schemes, such that they can be used to form spin echoes without the introduction of a phase error. In particular, a new antisymmetric dual-compensated refocusing pulse is presented that is constructed from ten 90° pulses, equivalent to just five 180° pulses.</p></div>","PeriodicalId":16267,"journal":{"name":"Journal of magnetic resonance","volume":"367 ","pages":"Article 107758"},"PeriodicalIF":2.0,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1090780724001423/pdfft?md5=759c2933286a1c53d0fc75bfcb2a382b&pid=1-s2.0-S1090780724001423-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142161731","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Diffusion Exchange Ratio (DEXR): A minimal sampling of diffusion exchange spectroscopy to probe exchange, restriction, and time-dependence 扩散交换比(DEXR):扩散交换光谱的最小取样,用于探测交换、限制和时间依赖性。
IF 2 3区 化学
Journal of magnetic resonance Pub Date : 2024-08-06 DOI: 10.1016/j.jmr.2024.107745
Teddy X. Cai , Nathan H. Williamson , Rea Ravin , Peter J. Basser
{"title":"The Diffusion Exchange Ratio (DEXR): A minimal sampling of diffusion exchange spectroscopy to probe exchange, restriction, and time-dependence","authors":"Teddy X. Cai ,&nbsp;Nathan H. Williamson ,&nbsp;Rea Ravin ,&nbsp;Peter J. Basser","doi":"10.1016/j.jmr.2024.107745","DOIUrl":"10.1016/j.jmr.2024.107745","url":null,"abstract":"&lt;div&gt;&lt;p&gt;Water exchange is increasingly recognized as an important biological process that can affect the study of biological tissue using diffusion MR. Methods to measure exchange, however, remain immature as opposed to those used to characterize restriction, with no consensus on the optimal pulse sequence (s) or signal model (s). In general, the trend has been towards data-intensive fitting of highly parameterized models. We take the opposite approach and show that a judicious sub-sample of diffusion exchange spectroscopy (DEXSY) data can be used to robustly quantify exchange, as well as restriction, in a data-efficient manner. This sampling produces a ratio of two points per mixing time: (i) one point with equal diffusion weighting in both encoding periods, which gives maximal exchange contrast, and (ii) one point with the same &lt;em&gt;total&lt;/em&gt; diffusion weighting in just the first encoding period, for normalization. We call this quotient the Diffusion EXchange Ratio (DEXR). Furthermore, we show that it can be used to probe time-dependent diffusion by estimating the velocity autocorrelation function (VACF) over intermediate to long times (&lt;span&gt;&lt;math&gt;&lt;mrow&gt;&lt;mo&gt;∼&lt;/mo&gt;&lt;mn&gt;2&lt;/mn&gt;&lt;mo&gt;−&lt;/mo&gt;&lt;mn&gt;500&lt;/mn&gt;&lt;mspace&gt;&lt;/mspace&gt;&lt;mi&gt;ms&lt;/mi&gt;&lt;/mrow&gt;&lt;/math&gt;&lt;/span&gt;). We provide a comprehensive theoretical framework for the design of DEXR experiments in the case of static or constant gradients. Data from Monte Carlo simulations and experiments acquired in fixed and viable &lt;em&gt;ex vivo&lt;/em&gt; neonatal mouse spinal cord using a permanent magnet system are presented to test and validate this approach. In viable spinal cord, we report the following apparent parameters from just 6 data points: &lt;span&gt;&lt;math&gt;&lt;mrow&gt;&lt;msub&gt;&lt;mrow&gt;&lt;mi&gt;τ&lt;/mi&gt;&lt;/mrow&gt;&lt;mrow&gt;&lt;mi&gt;k&lt;/mi&gt;&lt;/mrow&gt;&lt;/msub&gt;&lt;mo&gt;=&lt;/mo&gt;&lt;mn&gt;17&lt;/mn&gt;&lt;mo&gt;±&lt;/mo&gt;&lt;mn&gt;4&lt;/mn&gt;&lt;mspace&gt;&lt;/mspace&gt;&lt;mi&gt;ms&lt;/mi&gt;&lt;/mrow&gt;&lt;/math&gt;&lt;/span&gt;, &lt;span&gt;&lt;math&gt;&lt;mrow&gt;&lt;msub&gt;&lt;mrow&gt;&lt;mi&gt;f&lt;/mi&gt;&lt;/mrow&gt;&lt;mrow&gt;&lt;mi&gt;N&lt;/mi&gt;&lt;mi&gt;G&lt;/mi&gt;&lt;/mrow&gt;&lt;/msub&gt;&lt;mo&gt;=&lt;/mo&gt;&lt;mn&gt;0&lt;/mn&gt;&lt;mo&gt;.&lt;/mo&gt;&lt;mn&gt;72&lt;/mn&gt;&lt;mo&gt;±&lt;/mo&gt;&lt;mn&gt;0&lt;/mn&gt;&lt;mo&gt;.&lt;/mo&gt;&lt;mn&gt;01&lt;/mn&gt;&lt;/mrow&gt;&lt;/math&gt;&lt;/span&gt;, &lt;span&gt;&lt;math&gt;&lt;mrow&gt;&lt;msub&gt;&lt;mrow&gt;&lt;mi&gt;R&lt;/mi&gt;&lt;/mrow&gt;&lt;mrow&gt;&lt;mi&gt;eff&lt;/mi&gt;&lt;/mrow&gt;&lt;/msub&gt;&lt;mo&gt;=&lt;/mo&gt;&lt;mn&gt;1&lt;/mn&gt;&lt;mo&gt;.&lt;/mo&gt;&lt;mn&gt;05&lt;/mn&gt;&lt;mo&gt;±&lt;/mo&gt;&lt;mn&gt;0&lt;/mn&gt;&lt;mo&gt;.&lt;/mo&gt;&lt;mn&gt;01&lt;/mn&gt;&lt;mspace&gt;&lt;/mspace&gt;&lt;mi&gt;μm&lt;/mi&gt;&lt;/mrow&gt;&lt;/math&gt;&lt;/span&gt;, and &lt;span&gt;&lt;math&gt;&lt;mrow&gt;&lt;msub&gt;&lt;mrow&gt;&lt;mi&gt;κ&lt;/mi&gt;&lt;/mrow&gt;&lt;mrow&gt;&lt;mi&gt;eff&lt;/mi&gt;&lt;/mrow&gt;&lt;/msub&gt;&lt;mo&gt;=&lt;/mo&gt;&lt;mn&gt;0&lt;/mn&gt;&lt;mo&gt;.&lt;/mo&gt;&lt;mn&gt;19&lt;/mn&gt;&lt;mo&gt;±&lt;/mo&gt;&lt;mn&gt;0&lt;/mn&gt;&lt;mo&gt;.&lt;/mo&gt;&lt;mn&gt;04&lt;/mn&gt;&lt;mspace&gt;&lt;/mspace&gt;&lt;mi&gt;μm/ms&lt;/mi&gt;&lt;/mrow&gt;&lt;/math&gt;&lt;/span&gt;, which correspond to the exchange time, restricted or non-Gaussian signal fraction, an effective spherical radius, and permeability, respectively. For the VACF, we report a long-time, power-law scaling with &lt;span&gt;&lt;math&gt;&lt;mrow&gt;&lt;mo&gt;≈&lt;/mo&gt;&lt;msup&gt;&lt;mrow&gt;&lt;mi&gt;t&lt;/mi&gt;&lt;/mrow&gt;&lt;mrow&gt;&lt;mo&gt;−&lt;/mo&gt;&lt;mn&gt;2&lt;/mn&gt;&lt;mo&gt;.&lt;/mo&gt;&lt;mn&gt;4&lt;/mn&gt;&lt;/mrow&gt;&lt;/msup&gt;&lt;/mrow&gt;&lt;/math&gt;&lt;/span&gt;, which is approximately consistent with disordered domains in 3-D. Overall, the DEXR method is shown to be highly efficient, capable of providing valuable quantitative ","PeriodicalId":16267,"journal":{"name":"Journal of magnetic resonance","volume":"366 ","pages":"Article 107745"},"PeriodicalIF":2.0,"publicationDate":"2024-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141914952","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A complete 3D-printed tool kit for Solid-State NMR sample and rotor handling 用于固态 NMR 样品和转子处理的全套 3D 打印工具包
IF 2 3区 化学
Journal of magnetic resonance Pub Date : 2024-08-06 DOI: 10.1016/j.jmr.2024.107748
Martin A. Olson , Ruixian Han , Thirupathi Ravula , Collin G. Borcik , Songlin Wang , Perla A. Viera , Chad M. Rienstra
{"title":"A complete 3D-printed tool kit for Solid-State NMR sample and rotor handling","authors":"Martin A. Olson ,&nbsp;Ruixian Han ,&nbsp;Thirupathi Ravula ,&nbsp;Collin G. Borcik ,&nbsp;Songlin Wang ,&nbsp;Perla A. Viera ,&nbsp;Chad M. Rienstra","doi":"10.1016/j.jmr.2024.107748","DOIUrl":"10.1016/j.jmr.2024.107748","url":null,"abstract":"<div><p>Solid state NMR (SSNMR) is a highly versatile and broadly applicable method for studying the structure and dynamics of biomolecules and materials. For scientists entering the field of SSNMR, the many quotidian activities required in the workflow to prepare samples for data collection can present a significant barrier to adoption. These steps include transfer of samples into rotors, marking the reflective surfaces for high sensitivity tachometer signal detection, inserting rotors into the magic-angle spinning (MAS) stator, achieving stable spinning, and removing and storing rotors to ensure reproducibility of data collection conditions. Even experienced spectroscopists experience occasional problems with these operations, and the cumulative probability of a delay to successful data collection is high enough to cause frequent disruptions to instrument schedules, particularly in the context of large facilities serving a diverse community of users. These problems are all amplified when utilizing rotors smaller than about 4 mm in diameter. Therefore, to improve the reliability and robustness of SSNMR sample preparation workflows, here we describe a set of tools for rotor packing, unpacking, tachometer marking, extraction and storage. Stereolithography 3D printing was employed as a cost-effective and convenient method for prototyping and manufacturing a full range of designs suitable for several types of probes and rotor geometries.</p></div>","PeriodicalId":16267,"journal":{"name":"Journal of magnetic resonance","volume":"366 ","pages":"Article 107748"},"PeriodicalIF":2.0,"publicationDate":"2024-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142044405","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Tetrakis(trimethylsilyl)silane as a standard compound for fast spinning Solid-State NMR experiments 四(三甲基硅基)硅烷作为快速旋转固态核磁共振实验的标准化合物。
IF 2 3区 化学
Journal of magnetic resonance Pub Date : 2024-08-05 DOI: 10.1016/j.jmr.2024.107747
Ruixian Han , Alexander L. Paterson , Moses H. Milchberg , Yuanchi Pang , Boden H. Vanderloop , Chad M. Rienstra
{"title":"Tetrakis(trimethylsilyl)silane as a standard compound for fast spinning Solid-State NMR experiments","authors":"Ruixian Han ,&nbsp;Alexander L. Paterson ,&nbsp;Moses H. Milchberg ,&nbsp;Yuanchi Pang ,&nbsp;Boden H. Vanderloop ,&nbsp;Chad M. Rienstra","doi":"10.1016/j.jmr.2024.107747","DOIUrl":"10.1016/j.jmr.2024.107747","url":null,"abstract":"<div><p>The development of magic angle spinning (MAS) at rates ranging from 30 kHz to greater than 100 kHz has substantially advanced solid-state nuclear magnetic resonance (SSNMR) spectroscopy <sup>1</sup>H-detection methods. The small rotors required for such MAS rates have a limited sample volume and low <sup>13</sup>C-detection sensitivity, rendering the traditional set of standard compounds for SSNMR insufficient or highly inconvenient for shimming and magic-angle calibration. Additionally, the reproducibility of magic angle setting, chemical shift referencing, and probe position can be especially critical for SSNMR experiments at high fields. These conditions suggest the need for a high signal-to-noise ratio (SNR) <sup>1</sup>H-detection standard compound, which is preferably multi-purpose, to simplify instrument set up for ultra-fast MAS SSNMR instruments at high magnetic fields. In this study, we present the results for setting magic angle and shimming using tetrakis(trimethylsilyl)silane (TTMSS, or TKS), a tetramethylsilane (TMS) analogue, at near 40 kHz and demonstrate that we can achieve favorable results in less time but with equal or superior precision as traditional KBr and adamantane standards. The high SNR and TMS-like chemical shift of TKS also opens the possibilities for using TKS as an internal standard with biological samples. A single rotor containing a four-component mixture of TKS, adamantane, uniformly <sup>13</sup>C, <sup>15</sup>N-labeled N-acetyl valine and KBr was used to perform a complete configuration and calibration of a SSNMR probe without sample changes. We anticipate TKS as a standard compound to be especially effective at very high MAS conditions and to greatly simplify the instrument set up for high and ultra-high field SSNMR instruments.</p></div>","PeriodicalId":16267,"journal":{"name":"Journal of magnetic resonance","volume":"367 ","pages":"Article 107747"},"PeriodicalIF":2.0,"publicationDate":"2024-08-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142047727","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Super-resolution NMR spectroscopy 超分辨率核磁共振光谱
IF 2 3区 化学
Journal of magnetic resonance Pub Date : 2024-08-03 DOI: 10.1016/j.jmr.2024.107746
Luca Wenchel , Olivia Gampp , Roland Riek
{"title":"Super-resolution NMR spectroscopy","authors":"Luca Wenchel ,&nbsp;Olivia Gampp ,&nbsp;Roland Riek","doi":"10.1016/j.jmr.2024.107746","DOIUrl":"10.1016/j.jmr.2024.107746","url":null,"abstract":"<div><p>Spectral resolution is one of the limiting factors in nuclear magnetic resonance (NMR) spectroscopy of biological systems where signal overlap often interferes with chemical shift assignment as well as dynamics and structure analysis. This problem can be addressed in part by using higher magnetic field NMR spectrometers operating at up to 1.2 GHz <sup>1</sup>H frequency to enhance the resolution proportionally with the field strength, and by deuteration in combination with transverse relaxation-optimized spectroscopy that reduces the transverse relaxation rate and proportionally the resonance linewidth of the peaks yielding higher spectral resolution. As a complement or alternative to these expensive and often insufficient approaches, we present here a generally applicable method to reduce the linewidth of peaks in indirect dimensions of multi-dimensional NMR spectra by increasing the number of scans per time increment exponentially as a function of time in order to compensate, in part, the decay of the signal caused by transverse relaxation. This enables to achieve a user-defined linewidth of the peaks without undue increase of the noise. Optimization by including in the number of scans also a cosine apodization function as well as processing spectra with an exponential-cosine window function in the direct dimension results typically in a resolution enhancement (linewidth reduction) by a factor of 1.5–2 in comparison to a standard measurement with a constant number of scans per time increment. This is comparable to the 2-fold resolution enhancement that can be obtained by going from a 600 MHz <sup>1</sup>H frequency NMR spectrometer to a 1.2 GHz instrument, or from 1.2 GHz to a spectrum measured hypothetically at 2.4 GHz <sup>1</sup>H frequency. A factor of two resolution enhancement causes thereby a signal to noise loss of a factor of three. The sensitivity gain by dynamic number of scan sampling is thereby ∼20 % over the use of a digital apodization function.</p></div>","PeriodicalId":16267,"journal":{"name":"Journal of magnetic resonance","volume":"366 ","pages":"Article 107746"},"PeriodicalIF":2.0,"publicationDate":"2024-08-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1090780724001307/pdfft?md5=a4a8c026a704df7c0d6034901bc7234d&pid=1-s2.0-S1090780724001307-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141997492","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Impact of undersampling on preclinical lung T2* mapping with 3D radial UTE MRI at 7 T 7 T 下三维径向 UTE MRI 的采样不足对临床前肺 T2* 映像的影响
IF 2 3区 化学
Journal of magnetic resonance Pub Date : 2024-08-01 DOI: 10.1016/j.jmr.2024.107741
Ian R. Stecker , Abdullah S. Bdaiwi , Peter J. Niedbalski , Neelakshi Chatterjee , Md M. Hossain , Zackary I. Cleveland
{"title":"Impact of undersampling on preclinical lung T2* mapping with 3D radial UTE MRI at 7 T","authors":"Ian R. Stecker ,&nbsp;Abdullah S. Bdaiwi ,&nbsp;Peter J. Niedbalski ,&nbsp;Neelakshi Chatterjee ,&nbsp;Md M. Hossain ,&nbsp;Zackary I. Cleveland","doi":"10.1016/j.jmr.2024.107741","DOIUrl":"10.1016/j.jmr.2024.107741","url":null,"abstract":"<div><p>Lung diseases are almost invariably heterogeneous and progressive, making it imperative to capture temporally and spatially explicit information to understand the disease initiation and progression. Imaging the lung with MRI—particularly in the preclinical setting—has historically been challenging because of relatively low lung tissue density, rapid cardiac and respiratory motion, and rapid transverse (T<sub>2</sub>*) relaxation. These limitations can largely be mitigated using ultrashort-echo-time (UTE) sequences, which are intrinsically robust to motion and avoid significant T<sub>2</sub>* decay. A significant disadvantage of common radial UTE sequences is that they require inefficient, center-out k-space sampling, resulting in long acquisition times relative to conventional Cartesian sequences. Therefore, pulmonary images acquired with radial UTE are often undersampled to reduce acquisition time. However, undersampling reduces image SNR, introduces image artifacts, and degrades true image resolution. The level of undersampling is further increased if offline gating techniques like retrospective gating are employed, because only a portion (∼40–50%) of the data is used in the final image reconstruction. Here, we explore the impact of undersampling on SNR and T<sub>2</sub>* mapping in mouse lung imaging using simulation and in-vivo data. Increased scatter in both metrics was noticeable at around 50% sampling. Parenchymal apparent SNR only decreased slightly (average decrease ∼ 1.4) with as little as 10% sampling. Apparent T<sub>2</sub>* remained similar across undersampling levels, but it became significantly increased (p &lt; 0.05) below 80% sampling. These trends suggest that undersampling can generate quantifiable, but moderate changes in the apparent value of T<sub>2</sub>*. Moreover, these approaches to assess the impact of undersampling are straightforward to implement and can readily be expanded to assess the quantitative impact of other MR acquisition and reconstruction parameters.</p></div>","PeriodicalId":16267,"journal":{"name":"Journal of magnetic resonance","volume":"365 ","pages":"Article 107741"},"PeriodicalIF":2.0,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141838804","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Impact of Zeeman and hyperfine interactions on the magnetic properties of paramagnetic metal Ions: I. Local interactions of the electron spin 齐曼和超细相互作用对顺磁性金属离子磁性能的影响:I. 电子自旋的局部相互作用
IF 2 3区 化学
Journal of magnetic resonance Pub Date : 2024-08-01 DOI: 10.1016/j.jmr.2024.107728
Yu.E. Kandrashkin
{"title":"Impact of Zeeman and hyperfine interactions on the magnetic properties of paramagnetic metal Ions: I. Local interactions of the electron spin","authors":"Yu.E. Kandrashkin","doi":"10.1016/j.jmr.2024.107728","DOIUrl":"10.1016/j.jmr.2024.107728","url":null,"abstract":"<div><p>The anisotropic Zeeman interaction of an ion, and the strong hyperfine interaction with its own nucleus, can significantly influence its interactions with the local environment. These effects, including the reduction of the effective magnetic moment of the electron spin and the phase memory decay rate, are studied theoretically. Analytical expressions describing the mean magnetic moment of the electron spin are obtained. The results of the theoretical analysis and accompanying numerical computations show that the strong hyperfine interaction of the ion reduces its effective magnetic moment. In particular, a 7% reduction is found for the scandium endofullerene Sc<sub>2</sub>@C<sub>80</sub>(CH<sub>2</sub>Ph) under conditions typical of an X-band EPR experiment.</p></div>","PeriodicalId":16267,"journal":{"name":"Journal of magnetic resonance","volume":"365 ","pages":"Article 107728"},"PeriodicalIF":2.0,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141691125","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Single-Shot MRI in parahydrogen hyperpolarized samples 对氢超极化样品中的单次磁共振成像。
IF 2 3区 化学
Journal of magnetic resonance Pub Date : 2024-08-01 DOI: 10.1016/j.jmr.2024.107740
L. Buljubasich
{"title":"Single-Shot MRI in parahydrogen hyperpolarized samples","authors":"L. Buljubasich","doi":"10.1016/j.jmr.2024.107740","DOIUrl":"10.1016/j.jmr.2024.107740","url":null,"abstract":"<div><p>The site-specific signal enhancement provided by parahydrogen induced polarization (PHIP) may be combined with magnetic resonance imaging (MRI) to study chemical and biomolecular processes. However, imaging of hydrogen nuclei (<span><math><msup><mrow></mrow><mrow><mn>1</mn></mrow></msup></math></span>H) is hampered by background signals arising from the presence of thermally polarized nuclei. Additionally, fast imaging sequences are commonly based on multiple radio-frequency pulses, where the signals resulting from PHIP oscillate due to the evolution with a <span><math><mi>J</mi></math></span>-coupling Hamiltonian. In this article, an innovative imaging scheme for single-scan MRI is presented that effectively detects hyperpolarized components while simultaneously canceling out thermal contributions. This method is based on the quenching of inherent oscillations of PHIP-originated signals due to <span><math><mi>J</mi></math></span>-couplings during the multipulse sequence and the suppression of thermal signals by spin dynamics and a tailored restructuring of the <span><math><mi>k</mi></math></span>-space. A series of numerical simulations on specific two- and three-spin systems serve to support the feasibility of the approach. Furthermore, this theoretical study demonstrates the potential of combining hyperpolarization and long-lived states (PHIP and LLS) in the selected molecules, which could be seen as a preliminary step towards the development of fast imaging techniques, for example in the field of biomolecular research.</p></div>","PeriodicalId":16267,"journal":{"name":"Journal of magnetic resonance","volume":"365 ","pages":"Article 107740"},"PeriodicalIF":2.0,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141763611","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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