Journal of Clinical Virology最新文献

{"title":"Emergence of Parechovirus-A5 central nervous system infections in children from Kansas City, Missouri, USA","authors":"Debarpan Dhar ,&nbsp;Anjana Sasidharan ,&nbsp;Katelyn E. VanDonge ,&nbsp;Brian Lee ,&nbsp;Maria Deza-Leon ,&nbsp;Christopher J. Harrison ,&nbsp;Dithi Banerjee ,&nbsp;Rangaraj Selvarangan","doi":"10.1016/j.jcv.2025.105835","DOIUrl":"10.1016/j.jcv.2025.105835","url":null,"abstract":"<div><h3>Background</h3><div>Parechovirus-A5 (PeV-A5) blood and central nervous system (CNS) infections are rare in the United States of America (USA) and globally. We report an emergence of PeV-A5 infections among infants in Kansas City, Missouri, in 2024.</div></div><div><h3>Methods</h3><div>Cerebrospinal fluid (CSF) and blood samples from infants were tested for Parechovirus-A (PeV-A) in 2024 as a part of standard of care at Children's Mercy Kansas City (CM-KC). PeV-A testing included a two-step reverse transcriptase-polymerase chain reaction, and genotyping was conducted using Sanger sequencing. We analyzed the amino acid sequences and phylogeny of the 2024 PeV-A viruses and described the clinical characteristics of PeV-A infected infants.</div></div><div><h3>Results</h3><div>Among 211 CSF and 46 blood samples from 248 patients, 10 (4 %) PeV-A infected patients were detected (8 CSF, 2 blood). Genotyping was successful for viruses from 9 PeV-A infected patients, with 8 identified as PeV-A5 (6 CSF, 2 blood) and 1 as PeV-A4 (CSF). PeV-A5 viral sequences from CM-KC clustered with other known PeV-A5 sequences, being most similar (&gt;97 %) to a PeV-A5 viral sequence from Sapporo City, Japan, in 2018. PeV-A5 detections from CM-KC occurred with a summer-fall seasonality. All 8 PeV-A5 infected patients had symptoms of rash with less irritability and lower maximum temperature when compared to previous PeV-A3 and PeV-A4 infected patients at CM-KC.</div></div><div><h3>Conclusions</h3><div>PeV-A5 emerged as the predominant PeV-A genotype detected from sterile sites (CSF, blood) in infants in Kansas City, Missouri in 2024, representing the highest number of PeV-A5 systemic illness in infants in the USA within a year.</div></div>","PeriodicalId":15517,"journal":{"name":"Journal of Clinical Virology","volume":"180 ","pages":"Article 105835"},"PeriodicalIF":4.0,"publicationDate":"2025-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144703721","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The Human Papillomavirus (HPV) Laboratory e-Manual: A comprehensive guide for HPV testing and research","authors":"Laila Sara Arroyo Mühr ,&nbsp;Carina Eklund ,&nbsp;Camilla Lagheden ,&nbsp;Rita Mariel Correa ,&nbsp;María Dolores Fellner ,&nbsp;Maria Alejandra Picconi ,&nbsp;Nazlı Songur ,&nbsp;Murat Gultekin ,&nbsp;Kate Cuschieri ,&nbsp;Jean-Luc Prétet ,&nbsp;Quentin Lepiller ,&nbsp;Alice Baraquin ,&nbsp;Steffi Silling ,&nbsp;Kristiane Søreng ,&nbsp;Milan Stosic ,&nbsp;Gro Kummeneje Presthus ,&nbsp;Marc Arbyn ,&nbsp;Michael Peeters ,&nbsp;Steven Van Gucht ,&nbsp;Elizaveta Padalko ,&nbsp;Joakim Dillner","doi":"10.1016/j.jcv.2025.105834","DOIUrl":"10.1016/j.jcv.2025.105834","url":null,"abstract":"<div><h3>Background</h3><div>Human Papillomavirus (HPV) vaccination and HPV-based cervical cancer screening are central pillars of the World Health Organization (WHO) global cervical cancer elimination strategy. The WHO HPV Laboratory Manual, published in 2009, has provided essential guidance to promote an internationally comparable quality of HPV testing for many years. As the development in this area is rapid, the Global Network of National HPV Reference Laboratories considered that there is a need for an updated HPV Laboratory e-Manual to serve as a comprehensive and interactive resource for professionals engaged in quality-assured HPV testing for research and/or HPV-based cancer control.</div></div><div><h3>Content</h3><div>The HPV Laboratory e-Manual covers key areas, including laboratory quality assurance, HPV taxonomy and risk association, collection and handling of specimens, nucleic acid extraction, HPV detection and typing, HPV serology, data management, and the use of international standards. It provides up-to-date protocols and best practices to enhance accuracy and reliability of HPV testing. Interactive features allow for real-time updates, making it a dynamic resource for laboratories worldwide. The e-Manual is freely available at: https://www.hpvcenter.se/hpv-laboratory-manual/.</div></div><div><h3>Collaborators</h3><div>The e-Manual has been developed by international experts from 11 countries, including contributors from the International HPV Reference Center (IHRC, Sweden), the CDC’s Global HPV Reference Laboratory (USA), and multiple National HPV Reference Laboratories (NRLs). The standard procedure for writing a chapter was that 2 NRLs authored the chapter and 1 other NRL reviewed it.</div></div><div><h3>Conclusion</h3><div>The HPV Laboratory e-Manual represents a step toward global harmonization in laboratory methodologies for HPV testing, underpinning both research and cervical cancer control efforts.</div></div>","PeriodicalId":15517,"journal":{"name":"Journal of Clinical Virology","volume":"179 ","pages":"Article 105834"},"PeriodicalIF":4.0,"publicationDate":"2025-07-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144605541","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Differential severity of SARS-CoV-2 variant infections in children and adults with COVID-19","authors":"Noah Brazer ,&nbsp;Venice Servellita ,&nbsp;Chengshi Jin ,&nbsp;Abiodun Foresythe ,&nbsp;Miriam Oseguera ,&nbsp;Jenny Nguyen ,&nbsp;Nanami Sumimoto ,&nbsp;Hee Jae Huh ,&nbsp;Andries Feder ,&nbsp;Sanchita Bhattacharya ,&nbsp;Surabhi Bhaskar ,&nbsp;Alicia Sotomayor-Gonzalez ,&nbsp;Prachi Saldhi ,&nbsp;Chris Choi ,&nbsp;Grace X. Li ,&nbsp;Komal Gopchandani ,&nbsp;Ashley Tippett ,&nbsp;Hui-Mien Hsiao ,&nbsp;Mark D. Gonzalez ,&nbsp;Dalia Gulick ,&nbsp;Charles Y. Chiu","doi":"10.1016/j.jcv.2025.105833","DOIUrl":"10.1016/j.jcv.2025.105833","url":null,"abstract":"<div><div>We performed virus whole-genome sequencing of 6916 upper respiratory swabs from adults and children from March 2020 to May 2023 and collected clinical metadata to assess differences in SARS-CoV-2 variant severity and symptomatology. Multivariable logistic regression showed a severity peak with Delta, which had the highest likelihood of severe infection. In children, another peak was observed with BA.4/BA.5, which was associated with more severe infection than both prior (BA.1) and later (BQ.1, BF.7, and XBB) Omicron variants. In contrast, BA.4/BA.5 in adults was associated with less severe infection than BA.1. Genome-wide association studies revealed that nonstructural protein 5 (nsp5, also called 3C-chymotrypsin-like protease), the Paxlovid target, and the spike N-terminal domain were strongly associated with severity. Kmers (contiguous nucleotide sequences of a fixed length k) from these regions matched the prototype Wuhan sequence exactly, corroborating decreases in severity over time. One kmer in the spike gene region was conserved in Delta genomes, with the kmer retained in higher proportions in patients with more severe infection. Our results show, with the exception of Delta, decreases in severity associated with SARS-CoV-2 variant infection over time and underscore the potential utility of kmer monitoring to assess variant severity.</div></div>","PeriodicalId":15517,"journal":{"name":"Journal of Clinical Virology","volume":"180 ","pages":"Article 105833"},"PeriodicalIF":4.0,"publicationDate":"2025-07-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144634511","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Evaluation of molecular detection for respiratory syncytial viruses in World Health Organization Europe region laboratories, 2020–2023","authors":"Lance D. Presser ,&nbsp;Amani Yousef ,&nbsp;Elaine McCulloch ,&nbsp;Julia Schaumburg ,&nbsp;Adam Meijer","doi":"10.1016/j.jcv.2025.105832","DOIUrl":"10.1016/j.jcv.2025.105832","url":null,"abstract":"<div><h3>Background</h3><div>Respiratory syncytial virus (RSV) is a common pathogen causing mostly mild-symptoms, but in young infants and elderly individuals it can lead to severe disease and death. After the SARS-CoV-2 pandemic, more focus on and testing of patients with respiratory symptoms occurred, which led to an increase in RSV detections. Also, newly developed vaccines and prophylactic and therapeutic antibodies against RSV have been approved for use, increasing attention on the need for quality RSV diagnostics.</div></div><div><h3>Objectives</h3><div>The goal of this study was a broad analysis of the external quality assessment (EQA) data for RSV using data from Quality Control for Molecular Diagnostics (QCMD).</div></div><div><h3>Results</h3><div>Using the QCMD data, performance of NAATs for detecting RSV was evaluated on an average of 67 laboratories per year, in an average of 21 countries across the WHO Europe region. The results of these EQAs show that the performance of laboratories for RSV molecular diagnostics in the WHO Europe region is good; overall correct scores for core samples between 96.8 % and 99.2 % for RSV-A and between 96.0 % and 100 % for RSV-B for the years 2020–2023. For the years 2020–2023, more tests were performed using commercial assays (63.5–82.0 %) than in-house assays (18.0–36.5 %).</div></div><div><h3>Conclusions</h3><div>Based on analysis of data from the QCMD RSV EQA program during the years 2020–2023, we conclude molecular diagnostics for RSV in laboratories from WHO Europe region are being performed with high-quality. However, with increases in testing, numerous diagnostic assays being used by laboratories, and possible viral changes to newly introduced vaccines and prophylactic/therapeutic antibodies, continued quality assessment of RSV diagnostics is recommended.</div></div>","PeriodicalId":15517,"journal":{"name":"Journal of Clinical Virology","volume":"179 ","pages":"Article 105832"},"PeriodicalIF":4.0,"publicationDate":"2025-07-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144597093","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"False-positive results in fourth-generation HIV screening tests: Prevalence and associated factors in Sichuan, a high HIV burden province of China","authors":"Hong Zhang ,&nbsp;Jiaqiang Wang ,&nbsp;Xiangqin Liu ,&nbsp;Xueru Li ,&nbsp;Xuexi Zeng ,&nbsp;Qing Luo ,&nbsp;Jialing Zhong","doi":"10.1016/j.jcv.2025.105831","DOIUrl":"10.1016/j.jcv.2025.105831","url":null,"abstract":"<div><div>Immunodeficiency virus (HIV) antigen/antibody screening assays are highly sensitive and specific, but false-positive (FP) results remain a challenge. Understanding the prevalence and factors associated with these FP results is crucial, especially in high HIV burden regions. A retrospective cohort study of 370,291 patients screened with the ARCHITECT HIV Ag/Ab Combo assay at a Sichuan tertiary hospital (January 2022–December 2023) was conducted. We calculated HIV prevalence and assessed the test's FP rate, sensitivity, specificity and positive predictive value (PPV). Clinical characteristics and associated disease profiles of individuals with FP results were also analyzed. The overall HIV infection rate was 0.17 %. The FP rate for HIV screening was 0.08 %, with higher incidences observed among females, children (aged 0–17 years), and individuals aged 66 and older (<em>P</em> &lt; 0.001). The mean signal-to-cutoff ratio (S/CO) in true positives (TPs) was significantly higher than that in FPs (576.63 vs. 1.94, <em>P</em> &lt; 0.0001). A receiver operating characteristic (ROC)-determined cutoff of 19.6 provided optimal sensitivity (95.10 %) and specificity (99.99 %). FP results were associated with 18 disease categories, with digestive system disorders being the most prevalent. Malignant tumors, pregnancy, and cerebral infarction were also linked to FPs. These findings highlight the critical need for targeted screening strategies and more precise interpretation protocols to improve diagnostic accuracy. Furthermore, the link between FP results and various non-HIV-related diseases suggests that careful patient characterization may aid in identifying underlying conditions, thereby informing more effective clinical decision-making and public health interventions.</div></div>","PeriodicalId":15517,"journal":{"name":"Journal of Clinical Virology","volume":"179 ","pages":"Article 105831"},"PeriodicalIF":4.0,"publicationDate":"2025-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144563845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Corrigendum to “A prospective study of plasma and bronchoalveolar lavage fluid CMV DNA load quantification for the diagnosis and outcome of CMV pneumonitis in immunocompromised hosts” [J. Clin. Virol. 155 (2022) 105243]","authors":"Gasit Saksirisampant ,&nbsp;Theerasuk Kawamatawong ,&nbsp;Kawin Promsombat ,&nbsp;Warawut Sukkasem ,&nbsp;Somprasong Liamsombut ,&nbsp;Ekawat Pasomsub ,&nbsp;Jackrapong Bruminhent","doi":"10.1016/j.jcv.2025.105829","DOIUrl":"10.1016/j.jcv.2025.105829","url":null,"abstract":"","PeriodicalId":15517,"journal":{"name":"Journal of Clinical Virology","volume":"179 ","pages":"Article 105829"},"PeriodicalIF":4.0,"publicationDate":"2025-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144484608","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Accurate quantification using the new RoboGene HDV RNA Quantification Kit 3.0: A European multicenter study","authors":"Evelyn Stelzl ,&nbsp;Annemarie Berger ,&nbsp;Sandra Ciesek ,&nbsp;Antonella Olivero ,&nbsp;Pietro Lampertico ,&nbsp;Annapaola Callegaro ,&nbsp;Sara Uceda Renteria ,&nbsp;Albert Heim ,&nbsp;Stephan W. Aberle ,&nbsp;David N. Springer ,&nbsp;Heiner Wedemeyer ,&nbsp;Birgit Bremer ,&nbsp;Lisa Sandmann ,&nbsp;André Reinhardt ,&nbsp;Beatrix Gey ,&nbsp;Christian Früchtel ,&nbsp;Harald H. Kessler","doi":"10.1016/j.jcv.2025.105828","DOIUrl":"10.1016/j.jcv.2025.105828","url":null,"abstract":"<div><h3>Background</h3><div>The management of chronic hepatitis delta requires reliable test systems for the detection and quantification of hepatitis delta virus (HDV) RNA. The aim of this study was to obtain comparable results between seven European laboratories using the new RoboGene HDV RNA Quantification Kit 3.0 (Roboscreen GmbH) in combination with different test systems consisting of different nucleic acid extraction and amplification/detection platforms.</div></div><div><h3>Methods</h3><div>Correction factors (CFs) were determined to harmonize HDV RNA concentrations using the 1st WHO International Standard for HDV RNA (WHO IS HDV RNA). Limits of detection (LODs) were determined using a dilution series of the WHO IS HDV RNA. Reference material was used for accuracy testing. In addition, 20 dilutions of plasma sample pools obtained from untreated chronic hepatitis D patients were analyzed.</div></div><div><h3>Results</h3><div>The CFs ranged from 14 to 10,000 depending on the test system used. The calculated CFs were used for subsequent quantification. LODs ranged from &lt;2.2 to &gt;575 IU/mL. When accuracy was determined, the two lowest HDV RNA concentrations were not detected by the test system with the lowest sensitivity. When dilutions of pooled samples were tested, 7 of 140 results were reported as negative from all centers.</div></div><div><h3>Conclusions</h3><div>Test-specific CFs must be determined to harmonize HDV RNA quantification. Appropriate platforms for HDV RNA extraction are essential to achieve an adequate detection limit. Both high sensitivity and accurate quantification are important for the accurate monitoring of the response to existing anti-HDV treatment and for clinical trials of novel anti-HDV drugs.</div></div>","PeriodicalId":15517,"journal":{"name":"Journal of Clinical Virology","volume":"179 ","pages":"Article 105828"},"PeriodicalIF":4.0,"publicationDate":"2025-06-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144329890","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Prevalence of hepatitis B virus infection among pregnant women and cord blood hepatitis B surface antigen positive newborns in sub-Saharan Africa and South Asia","authors":"Carine Bokop ,&nbsp;Nisha Dhar ,&nbsp;Alane Izu ,&nbsp;Jayendrie Thaver-Kleitman ,&nbsp;Nishi Prabdial-sing ,&nbsp;Musa Mohammed Ali ,&nbsp;Godwin Akaba ,&nbsp;Hellen C. Barsosio ,&nbsp;James A. Berkley ,&nbsp;Manisha Madhai Beck ,&nbsp;Tolossa E. Chaka ,&nbsp;Clare L. Cutland ,&nbsp;Phurb Dorji ,&nbsp;Maksuda Islam ,&nbsp;Adama Mamby Keita ,&nbsp;Feleke Belachew Lema ,&nbsp;Nubwa Medugu ,&nbsp;Stella Mwakio ,&nbsp;Stephen Obaro ,&nbsp;Eyinade K. Olateju ,&nbsp;Shabir A. Madhi","doi":"10.1016/j.jcv.2025.105826","DOIUrl":"10.1016/j.jcv.2025.105826","url":null,"abstract":"<div><h3>Background</h3><div>Newborns infected with Hepatitis B Virus (HBV) are at risk of chronic liver disease and hepatocellular carcinoma.</div></div><div><h3>Objectives</h3><div>This study investigated the prevalence of HBV infection among pregnant women and cord blood Hepatitis B surface antigen (HBsAg) positivity of their newborns in Bangladesh, Bhutan, India, Ethiopia, Mozambique, Kenya, Nigeria, Mali, and South Africa.</div></div><div><h3>Study design</h3><div>Randomly selected paired maternal and cord blood samples (n = 101 each site) taken at delivery were tested for HBsAg and Hepatitis B extractable antigen (HBeAg) in the women using a chemiluminescent microparticle immunoassay. Similarly, cord blood sample of newborn was assessed for HBsAg reactivity. HBV DNA was quantified using the Xpert® HBV viral load assay, followed by genotyping.</div></div><div><h3>Results</h3><div>The overall prevalence of maternal HBsAg positivity was 5.5 % (95 %CI: 0.4 %–7.1 %; n = 50/909). HBsAg positivity was higher in African countries (7.3 %; 95 %CI: 5.4 %–9.6 %; n = 44/606) compared to South Asian countries (2.0 %; 95 %CI: 0.8 %–4.3 %; n = 6/303; p = 0.002). Relative to South Africa, there were higher odds of HBsAg sero-positivity in women from Mozambique ((aOR): 7.7, 95 %CI: 1.6 %–37.8 %) and Mali (aOR: 5.7; 95 %CI: 1.1 %–29.7 %). The rate of HBsAg positivity in cord blood of babies born to HBsAg positive women was 28.0 % (95 %CI: 17.1 %–42.3 %; n = 14/50), including 31.8 % (95 %CI: 19.5–47.4 %; n = 14/44) in African countries. No cord blood HBsAg positivity was observed in South Asia. Genotypic analysis revealed HBV genotypes A (41.7 %) and E (58.3 %) were pre-dominant.</div></div><div><h3>Conclusion</h3><div>The high rate of cord blood positivity (28.0 %) for HBsAg underscores the urgency of enhancing HBV prevention strategies to meet the World Health Organization’s target of a 90 % reduction in new HBV infections by 2030.</div></div>","PeriodicalId":15517,"journal":{"name":"Journal of Clinical Virology","volume":"179 ","pages":"Article 105826"},"PeriodicalIF":4.0,"publicationDate":"2025-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144297647","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Management and outcomes of children hospitalised with COVID-19 including incidental and nosocomial infections in Australia 2020–2023: A national surveillance study","authors":"Elizabeth White ,&nbsp;Mehyar Khair Baik ,&nbsp;Syeda Farah Zahir ,&nbsp;Christopher C. Blyth ,&nbsp;Jeremy Carr ,&nbsp;Nigel W. Crawford ,&nbsp;Joshua R. Francis ,&nbsp;Helen S. Marshall ,&nbsp;Emma Carey ,&nbsp;Kristine Macartney ,&nbsp;Brendan McMullan ,&nbsp;Nicholas Wood ,&nbsp;Philip N. Britton ,&nbsp;Julia E. Clark ,&nbsp;on behalf of the PAEDS network","doi":"10.1016/j.jcv.2025.105824","DOIUrl":"10.1016/j.jcv.2025.105824","url":null,"abstract":"<div><h3>Background</h3><div>Management and outcomes of children hospitalised with acute SARS-CoV-2 infection may differ throughout the pandemic or with admission type (clinical COVID-19, incidental COVID-19 or nosocomial infection).</div></div><div><h3>Objectives</h3><div>Describe the severity, management and outcomes of hospitalised children with acute SARS-CoV-2 infection in Australia across the first 4 years of the pandemic and compare between admission types, SARS-CoV-2 variants, age groups and immune status.</div></div><div><h3>Study design</h3><div>A multi-centre prospective cohort study of 6009 children aged 0–16 years between January 2020 and June 2023.</div></div><div><h3>Results</h3><div>Most children (84.3 %) did not receive respiratory support, 33.4 % received antibiotics and 8 % were admitted to intensive care unit (ICU). Infants &lt;6 months old were more likely to be admitted with clinical COVID than older children (12–16 years). Older children were more likely to receive antibiotics (27.8 % vs 43.9 %), corticosteroids (11.3 % vs 34.1%) or ICU admission (5.2 % vs 13.5 %). Compared to immunocompetent children, the immunosuppressed (7.7 %) were more likely to have nosocomial infection (9.5 % vs 3.9 %), receive antibiotics (57 % vs 25 %) or antivirals (18 % vs 4.4 %), but less likely to require respiratory support (93.4 % vs 83.8 %) or ICU admission (3.5 % vs 8 %). Children with nosocomial SARS-CoV-2 infection had higher rates of invasive ventilation (8 %) and ICU admission (21 %) compared to those with clinical (2.1 % and 7.1 % respectively) or incidental COVID-19 (4.8 % and 9.1 % respectively).</div></div><div><h3>Conclusions</h3><div>Acute COVID-19 generally caused mild disease in hospitalised children, with management and outcomes differing by age and admission type. Similar outcomes were observed across the pandemic. Nosocomial SARS-CoV-2 infection was associated with more severe disease.</div></div>","PeriodicalId":15517,"journal":{"name":"Journal of Clinical Virology","volume":"179 ","pages":"Article 105824"},"PeriodicalIF":4.0,"publicationDate":"2025-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144307294","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Comparative evaluation of STANDARD™ M10 Flu/RSV/SARS-CoV-2 and Savanna® Respiratory Viral Panel-4 assays for the rapid molecular diagnosis of influenza A/B virus, respiratory syncytial virus and SARS-CoV-2","authors":"Juulia Suominen,&nbsp;Raisa Loginov,&nbsp;Hannimari Kallio-Kokko","doi":"10.1016/j.jcv.2025.105827","DOIUrl":"10.1016/j.jcv.2025.105827","url":null,"abstract":"<div><h3>Background</h3><div>The occurrence of respiratory infections caused by seasonal viruses influenza A/B, RSV and SARS-CoV-2 has increased the demand for rapid diagnostic assays. Comparative performance data of such assays is required.</div></div><div><h3>Methods</h3><div>In this retrospective study, clinical samples were tested with the STANDARD™ M10 Flu/RSV/SARS-CoV-2 test and the novel Savanna® Respiratory Viral Panel-4 tests, with Xpert® Xpress SARS-CoV-2/Flu/RSV as the reference. All three are RT-PCR tests suitable for point-of-care testing. Discordant results on the Savanna assay were retested with a new research-use-only protocol. Serial dilution testing for all three was performed with an external control.</div></div><div><h3>Results</h3><div>A total of 141 clinical samples, including 106 specimens positive for at least one virus, were analyzed. The M10 assay showed sensitivities of 100 %, 95.7 %, 97.1 % and 97.0 % for influenza A, B, RSV and SARS-CoV-2, respectively. The Savanna assay showed sensitivities of 92.6 %, 95.7 %, 100 % and 90.9 %. Both assays exhibited high specificity (≥99 %), except for the Savanna assay’s lower specificity for RSV (94.2 %) and SARS-CoV-2 (94.3 %). Savanna had a higher retest rate (5.0 %), while M10 produced only conclusive results. Serial dilution testing showed that Xpert detected three viruses more effectively than the other assays.</div></div><div><h3>Conclusion</h3><div>Both M10 and Savanna performed well for influenza A/B, but M10 was superior for RSV and SARS-CoV-2 due to false positives with Savanna. The new Savanna protocol showed promise, but further studies are required to confirm these findings. Xpert assay was the most sensitive for detecting low viral amounts.</div></div>","PeriodicalId":15517,"journal":{"name":"Journal of Clinical Virology","volume":"179 ","pages":"Article 105827"},"PeriodicalIF":4.0,"publicationDate":"2025-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144271575","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}