Ian Hoskins, Shilpa Rao, Charisma Tante, Can Cenik
{"title":"Integrated multiplexed assays of variant effect reveal <i>cis</i>-regulatory determinants of catechol-<i>O</i>-methyltransferase gene expression.","authors":"Ian Hoskins, Shilpa Rao, Charisma Tante, Can Cenik","doi":"10.1101/2023.08.02.551517","DOIUrl":"10.1101/2023.08.02.551517","url":null,"abstract":"<p><p>Multiplexed assays of variant effect are powerful methods to profile the consequences of rare variants on gene expression and organismal fitness. Yet, few studies have integrated several multiplexed assays to map variant effects on gene expression in coding sequences. Here, we pioneered a multiplexed assay based on polysome profiling to measure variant effects on translation at scale, uncovering single-nucleotide variants that increase and decrease ribosome load. By combining high-throughput ribosome load data with multiplexed mRNA and protein abundance readouts, we mapped the <i>cis</i>-regulatory landscape of thousands of catechol-<i>O</i>-methyltransferase (<i>COMT</i>) variants from RNA to protein and found numerous coding variants that alter <i>COMT</i> expression. Finally, we trained machine learning models to map signatures of variant effects on <i>COMT</i> gene expression and uncovered both directional and divergent impacts across expression layers. Our analyses reveal expression phenotypes for thousands of variants in <i>COMT</i> and highlight variant effects on both single and multiple layers of expression. Our findings prompt future studies that integrate several multiplexed assays for the readout of gene expression.</p>","PeriodicalId":14793,"journal":{"name":"Journal of abnormal psychology","volume":"86 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-11-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10680568/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"79422274","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"心理学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The wolf.","authors":"R. K. Greenbank","doi":"10.2307/j.ctt1j5dfrf.17","DOIUrl":"https://doi.org/10.2307/j.ctt1j5dfrf.17","url":null,"abstract":"","PeriodicalId":14793,"journal":{"name":"Journal of abnormal psychology","volume":"54 3 1","pages":"417-9"},"PeriodicalIF":4.6,"publicationDate":"2023-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49167355","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"心理学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Supplemental Material for Self-Esteem and Psychosis in Daily Life: An Experience Sampling Study","authors":"","doi":"10.1037/abn0000722.supp","DOIUrl":"https://doi.org/10.1037/abn0000722.supp","url":null,"abstract":"","PeriodicalId":14793,"journal":{"name":"Journal of abnormal psychology","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2021-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49042133","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"心理学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Supplemental Material for Longitudinal Group and Individual Networks of Eating Disorder Symptoms in Individuals Diagnosed With an Eating Disorder","authors":"","doi":"10.1037/abn0000727.supp","DOIUrl":"https://doi.org/10.1037/abn0000727.supp","url":null,"abstract":"","PeriodicalId":14793,"journal":{"name":"Journal of abnormal psychology","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2021-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48930747","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"心理学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Supplemental Material for The Impact of Punishment on Cognitive Control in a Clinical Population Characterized by Heightened Punishment Sensitivity","authors":"","doi":"10.1037/abn0000713.supp","DOIUrl":"https://doi.org/10.1037/abn0000713.supp","url":null,"abstract":"","PeriodicalId":14793,"journal":{"name":"Journal of abnormal psychology","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2021-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47215569","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"心理学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Supplemental Material for Multimethod Assessment of Pubertal Timing and Associations With Internalizing Psychopathology in Early Adolescent Girls","authors":"","doi":"10.1037/abn0000721.supp","DOIUrl":"https://doi.org/10.1037/abn0000721.supp","url":null,"abstract":"","PeriodicalId":14793,"journal":{"name":"Journal of abnormal psychology","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2021-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43376121","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"心理学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Supplemental Material for Analyzing Dynamic Change in Children’s Socioemotional Development Using the Strengths and Difficulties Questionnaire in a Large United Kingdom Longitudinal Study","authors":"","doi":"10.1037/abn0000714.supp","DOIUrl":"https://doi.org/10.1037/abn0000714.supp","url":null,"abstract":"","PeriodicalId":14793,"journal":{"name":"Journal of abnormal psychology","volume":"236 1","pages":""},"PeriodicalIF":4.6,"publicationDate":"2021-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"57651610","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"心理学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Supplemental Material for Estimating the Symptom Structure of Bipolar Disorder via Network Analysis: Energy Dysregulation as a Central Symptom","authors":"","doi":"10.1037/abn0000715.supp","DOIUrl":"https://doi.org/10.1037/abn0000715.supp","url":null,"abstract":"","PeriodicalId":14793,"journal":{"name":"Journal of abnormal psychology","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2021-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41621042","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"心理学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Supplemental Material for All by Myself: Loneliness in Social Anxiety Disorder","authors":"","doi":"10.1037/abn0000705.supp","DOIUrl":"https://doi.org/10.1037/abn0000705.supp","url":null,"abstract":"","PeriodicalId":14793,"journal":{"name":"Journal of abnormal psychology","volume":"1 1","pages":""},"PeriodicalIF":4.6,"publicationDate":"2021-11-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41501925","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"心理学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Adela-Maria Isvoranu, Sacha Epskamp, Mike W-L Cheung
{"title":"Network models of posttraumatic stress disorder: A meta-analysis.","authors":"Adela-Maria Isvoranu, Sacha Epskamp, Mike W-L Cheung","doi":"10.1037/abn0000704","DOIUrl":"https://doi.org/10.1037/abn0000704","url":null,"abstract":"<p><p>Posttraumatic stress disorder (PTSD) researchers have increasingly used psychological network models to investigate PTSD symptom interactions, as well as to identify central driver symptoms. It is unclear, however, how generalizable such results are. We have developed a meta-analytic framework for aggregating network studies while taking between-study heterogeneity into account and applied this framework in the first-ever meta-analytic study of PTSD symptom networks. We analyzed the correlational structures of 52 different samples with a total sample size of n = 29,561 and estimated a single pooled network model underlying the data sets, investigated the scope of between-study heterogeneity, and assessed the performance of network models estimated from single studies. Our main findings are that: (a) We identified large between-study heterogeneity, indicating that it should be expected for networks of single studies to not perfectly align with one-another, and meta-analytic approaches are vital for the study of PTSD networks. (b) While several clear symptom-links, interpretable clusters, and significant differences between strength of edges and centrality of nodes can be identified in the network, no single or small set of nodes that clearly played a more central role than other nodes could be pinpointed, except for the symptom \"amnesia\" that was clearly the least central symptom. (c) Despite large between-study heterogeneity, we found that network models estimated from single samples can lead to similar network structures as the pooled network model. We discuss the implications of these findings for both the PTSD literature as well as methodological literature on network psychometrics. (PsycInfo Database Record (c) 2021 APA, all rights reserved).</p>","PeriodicalId":14793,"journal":{"name":"Journal of abnormal psychology","volume":"130 8","pages":"841-861"},"PeriodicalIF":4.6,"publicationDate":"2021-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39676558","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"心理学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}