2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB)最新文献

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Drug Development Pipeline Running Low, What’s Data Got to Do with It? 药物开发管道运行缓慢,数据与之有何关系?
2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB) Pub Date : 2019-12-01 DOI: 10.1109/SPMB47826.2019.9037860
M. Kiani
{"title":"Drug Development Pipeline Running Low, What’s Data Got to Do with It?","authors":"M. Kiani","doi":"10.1109/SPMB47826.2019.9037860","DOIUrl":"https://doi.org/10.1109/SPMB47826.2019.9037860","url":null,"abstract":"The per capita cost of health care in the US, by far the highest in the world, is driven in part by the high cost of pharmaceuticals. The low conversion rate of promising agents into successful clinical therapeutics is an important contributor to the high cost of pharmaceuticals. For example, all of the ~150 drugs developed in the last 15 years in mouse models to treat sepsis have failed in clinical trials. Several NIH institutes and other funding agencies have recently eliminated or significantly curtailed their funding for animal-based studies. A number of in vitro models of living tissues, especially organoids and microphysiological systems, are playing an increasingly significant role in prescreening of promising therapeutics for safety, efficacy and toxicity prior to expensive animal and human trials, thus offering the promise of accelerated drug development. However, a data-based understanding of how and the degree to which these assays reproduce the biological signals of interest, as well as drug-cell interactions, is critical to their successful deployment in the field of drug discovery. It is therefore critical to decipher omic and other changes to map known response pathways/networks so that in silico models can be used to determine which components of the biological signaling in human cells is preserved in mouse cells to guide further optimization of in vitro assays. Development of appropriate analytical tools will be critical to the success of this hybrid approach to drug development.","PeriodicalId":143197,"journal":{"name":"2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127118010","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
EEG Analysis of the Music Effect on Lecture Comprehension 音乐对课堂理解效果的脑电图分析
2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB) Pub Date : 2019-12-01 DOI: 10.1109/SPMB47826.2019.9037848
V.A. Díaz de León-Esparza, A. Martínez-Cervantes, A. G. Vargas-Cortés, A. E. Olivares-Núñez, D. Ibarra-Zárate, L. Alonso-Valerdi
{"title":"EEG Analysis of the Music Effect on Lecture Comprehension","authors":"V.A. Díaz de León-Esparza, A. Martínez-Cervantes, A. G. Vargas-Cortés, A. E. Olivares-Núñez, D. Ibarra-Zárate, L. Alonso-Valerdi","doi":"10.1109/SPMB47826.2019.9037848","DOIUrl":"https://doi.org/10.1109/SPMB47826.2019.9037848","url":null,"abstract":"Human concentration depends on many volatile environmental factors and its quantification has been a recurrent research topic. One way to quantify concentration is to record and analyze electrical activity in the cerebral cortex. Music is one factor that significantly influences concentration, both positively and negatively, so we studied the influence of music on the electrical activity generated by the frontal lobe during lecture comprehension. Sixteen subjects were recruited to carry out a lecture with or without music. Frontal lobe electrical activity was recorded during the readings. After each reading, a brief test was applied to quantify the level of lecture comprehension. Subsequently, cortical electrical signals were processed in two frequency bands: alpha (8–13 Hz) and beta (13–30 Hz). Our results suggest that individuals tend to increase their level of lecture comprehension when listening to their favorite music, reflecting a higher level of attention and better focus during the reading decoding process.","PeriodicalId":143197,"journal":{"name":"2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130721236","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Recent Advances in the Temple University Digital Pathology Corpus 天普大学数字病理语料库的最新进展
2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB) Pub Date : 2019-12-01 DOI: 10.1109/SPMB47826.2019.9037859
I. Hunt, S. Husain, J. Simon, I. Obeid, J. Picone
{"title":"Recent Advances in the Temple University Digital Pathology Corpus","authors":"I. Hunt, S. Husain, J. Simon, I. Obeid, J. Picone","doi":"10.1109/SPMB47826.2019.9037859","DOIUrl":"https://doi.org/10.1109/SPMB47826.2019.9037859","url":null,"abstract":"The Neural Engineering Data Consortium (NEDC) is developing a large open source database of highr-esolution digital pathology images known as the Temple University Digital Pathology Corpus (TUDP) [1] . Our long-term goal is to release one million images. We expect to release the first 100,000 image corpus by December 2020. The data is being acquired at the Department of Pathology at Temple University Hospital (TUH) using a Leica Biosystems Aperio AT2 scanner [2] and consists entirely of clinical pathology images. More information about the data and the project can be found in Shawki et al. [3] . We currently have a National Science Foundation (NSF) planning grant [4] to explore how best the community can leverage this resource. One goal of this poster presentation is to stimulate community-wide discussions about this project and determine how this valuable resource can best meet the needs of the public.","PeriodicalId":143197,"journal":{"name":"2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121976826","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
A Comparative Study of End-To-End Discriminative Deep Learning Models for Knee Joint Kinematic Time Series Classification 端到端判别深度学习模型在膝关节运动时间序列分类中的比较研究
2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB) Pub Date : 2019-12-01 DOI: 10.1109/SPMB47826.2019.9037831
M. Abid, A. Mitiche, Y. Ouakrim, P. Vendittoli, A. Fuentes, N. Hagemeister, N. Mezghani
{"title":"A Comparative Study of End-To-End Discriminative Deep Learning Models for Knee Joint Kinematic Time Series Classification","authors":"M. Abid, A. Mitiche, Y. Ouakrim, P. Vendittoli, A. Fuentes, N. Hagemeister, N. Mezghani","doi":"10.1109/SPMB47826.2019.9037831","DOIUrl":"https://doi.org/10.1109/SPMB47826.2019.9037831","url":null,"abstract":"One of the main motivations for classifying knee kinematic signals, namely the variation during a locomotion gait cycle of the angles the knee makes with respect to the three-dimensional (3D) planes of flexion/extension, abduction/adduction, and internal/external rotation, is to assist diagnosis of knee pathologies. These signals are informative but high dimensional, and highly variable, which has posed difficulties that have been addressed by machine learning algorithms. The purpose of this study is to investigate classification of knee kinematic signals through the entire gait using deep neural networks. The signals are first pre-processed to identify representative patterns, which are then used for deep learning of discriminative classifiers. This paper describes an efficient means of distinguishing between knee osteoarthrisis patients and asymptomatic participants, and our methods and experiments which validate it.","PeriodicalId":143197,"journal":{"name":"2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128304629","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Fast Automatic Artifact Annotator for EEG Signals Using Deep Learning 基于深度学习的脑电信号快速自动伪影标注器
2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB) Pub Date : 2019-12-01 DOI: 10.1109/SPMB47826.2019.9037834
D. Kim, S. Keene
{"title":"Fast Automatic Artifact Annotator for EEG Signals Using Deep Learning","authors":"D. Kim, S. Keene","doi":"10.1109/SPMB47826.2019.9037834","DOIUrl":"https://doi.org/10.1109/SPMB47826.2019.9037834","url":null,"abstract":"Electroencephalogram (EEG) is a widely used non-invasive brain signal acquisition technique that measures voltage fluctuations from neuron activities of the brain. EEGs are typically used to diagnose and monitor disorders such as epilepsy, sleep disorders, and brain death and also to help the advancement of various fields of science such as cognitive science, and psychology. EEG signals usually suffer from a variety of artifacts caused by eye movements, chewing, muscle movements, and electrode pops, which disrupts the diagnosis and hinders precise representation of brain activities. This paper proposes a deep learning based model to detect the presence of the artifacts and to classify the kind of the artifact to help clinicians resolve problems regarding artifacts immediately during the signal collection process. The model is optimized to map the 1-second segments of raw EEG signals to detect 4 different kinds of artifacts and the real signal. The model achieves a 5-class classification accuracy of 67.59%, and a true positive rate of 80% with a 25.82% false alarm for binary artifact classification with time-lapse. The model is lightweight and could potentially be deployed in portable machines.","PeriodicalId":143197,"journal":{"name":"2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129364373","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
Spectrum Sharing Strategy for Radio Frequency-Based Medical Services 基于射频的医疗服务频谱共享策略
2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB) Pub Date : 2019-12-01 DOI: 10.1109/SPMB47826.2019.9037847
Ammar Ahmed, Shuimei Zhang, Vaishali S. Amin, Yimin D. Zhang
{"title":"Spectrum Sharing Strategy for Radio Frequency-Based Medical Services","authors":"Ammar Ahmed, Shuimei Zhang, Vaishali S. Amin, Yimin D. Zhang","doi":"10.1109/SPMB47826.2019.9037847","DOIUrl":"https://doi.org/10.1109/SPMB47826.2019.9037847","url":null,"abstract":"Modern medical devices exploit radio frequency (RF) communication to remotely perform vital communication services for medical purposes. Real-time monitoring of health parameters, transferring of patient data to a data center or a cell phone, and controlling other medical devices are some of the important applications in medical science which exploit wireless communications. Some wireless devices also allow the mobility of patients or medical equipment on which these devices are mounted. Examples of such communication-enabled medical services are Wireless Medical Telemetry Service (WMTS) [1] and Medical Device Radiocommunications Service (MedRadio) [2] .","PeriodicalId":143197,"journal":{"name":"2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114541626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Total Variation Denoising for Optical Coherence Tomography 光学相干层析成像的全变分去噪
2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB) Pub Date : 2019-12-01 DOI: 10.1109/SPMB47826.2019.9037832
Michael Shamouilian, I. Selesnick
{"title":"Total Variation Denoising for Optical Coherence Tomography","authors":"Michael Shamouilian, I. Selesnick","doi":"10.1109/SPMB47826.2019.9037832","DOIUrl":"https://doi.org/10.1109/SPMB47826.2019.9037832","url":null,"abstract":"This paper introduces a new method of combining total variation denoising (TVD) and median filtering to reduce noise in optical coherence tomography (OCT) image volumes. Both noise from image acquisition and digital processing severely degrade the quality of the OCT volumes. The OCT volume consists of the anatomical structures of interest and speckle noise. For denoising purposes we model speckle noise as a combination of additive white Gaussian noise (AWGN) and sparse salt and pepper noise. The proposed method recovers the anatomical structures of interest by using a Median filter to remove the sparse salt and pepper noise and by using TVD to remove the AWGN while preserving the edges in the image. The proposed method reduces noise without much loss in structural detail. When compared to other leading methods, our method produces similar results significantly faster.","PeriodicalId":143197,"journal":{"name":"2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129999115","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
Machine Learning Enabled Wearable Brain Deformation Sensing System 机器学习可穿戴大脑变形传感系统
2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB) Pub Date : 2019-12-01 DOI: 10.1109/SPMB47826.2019.9037843
Sayemul Islam, Albert Kim
{"title":"Machine Learning Enabled Wearable Brain Deformation Sensing System","authors":"Sayemul Islam, Albert Kim","doi":"10.1109/SPMB47826.2019.9037843","DOIUrl":"https://doi.org/10.1109/SPMB47826.2019.9037843","url":null,"abstract":"Brain deformation – the primary cause of traumatic brain injury (TBI) – occurs during fall, automobile accident, brain surgery, or explosion (i.e., pressurized airflow) [1] . Mechanical impact causes strain energy that leads to tissue displacement. Researchers have attempted to characterize the brain deformation for diagnosis and prevention of concussion-related TBI [2] . It is especially important to measure microscale deformation because even a few tens of micrometer brain deformation may have direct neuropsychiatric and neuro-degenerative consequences [3] – [6] . Another effort to minimize brain deformation can be found in intracranial surgeries. The deformation is inevitable but can be minimized by designing a better apparatus and using advance stereotactic techniques [7] – [9] . As such, there are a few methods to measure brain deformation today [8] , [10] – [12] . Computational models and imaging technologies (e.g., FEM (finite element method) modeling, magnetic resonance imaging (MRI)) are such examples. However, because the brain is viscoelastic [13] , these technologies lack 1) detailed information regarding micro-scale brain deformation and 2) real-time measurement capability.","PeriodicalId":143197,"journal":{"name":"2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130379077","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Machine Learning Approach to Measure Sleep Quality using EEG Signals 利用脑电图信号测量睡眠质量的机器学习方法
2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB) Pub Date : 2019-12-01 DOI: 10.1109/SPMB47826.2019.9037833
M. Ravan, Senior Member
{"title":"Machine Learning Approach to Measure Sleep Quality using EEG Signals","authors":"M. Ravan, Senior Member","doi":"10.1109/SPMB47826.2019.9037833","DOIUrl":"https://doi.org/10.1109/SPMB47826.2019.9037833","url":null,"abstract":"Sleep quality has a vital effect on good health and well-being throughout a life. Getting enough sleep at the right times can help protect mental health, physical health, quality of life, and safety. In this study, an electroencephalography (EEG)-based machine-learning approach is proposed to measure sleep quality. The advantages of our approach over standard Polysomnography (PSG) method are: 1) it measures sleep quality by recognizing three sleep categories rather than five sleep stages, thus higher accuracy can be expected; 2) three sleep categories are recognized by analyzing EEG signals only using two EEG electrodes, so the user experience is improved because he/she is attached with fewer sensors during sleep. Using quantitative features obtained from EEG signals, we developed a new automatic sleep-staging framework that consists of a multi-class support vector machine (SVM) classification based on a decision tree approach. We used polysomnographic data from PhysioBank database to train and evaluate the performance of the framework, where the sleep stages have been visually annotated. The results demonstrated that the proposed approach achieves high classification performance, which helps to measure sleep quality accurately.","PeriodicalId":143197,"journal":{"name":"2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133732938","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Seismocardiographic Signal Variability During Regular Breathing and Breath Hold in Healthy Adults 健康成人正常呼吸和屏气时的心震信号变异性
2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB) Pub Date : 2019-12-01 DOI: 10.1109/SPMB47826.2019.9037852
M. K. Azad, P. Gamage, R. Sandler, N. Raval, H. Mansy
{"title":"Seismocardiographic Signal Variability During Regular Breathing and Breath Hold in Healthy Adults","authors":"M. K. Azad, P. Gamage, R. Sandler, N. Raval, H. Mansy","doi":"10.1109/SPMB47826.2019.9037852","DOIUrl":"https://doi.org/10.1109/SPMB47826.2019.9037852","url":null,"abstract":"Seismocardiographic signals (SCG) are known to correlate with mechanical cardiac activity and may be used for monitoring patients with cardiovascular disease. However, SCG variability is not well understood and may interfere with signal utility. In the current study, the SCG signals were acquired in 5 healthy subjects during regular breathing along with ECG and respiratory flow measurements. In addition, SCG waveforms were recorded during breath hold at end inspiration as well as end expiration. The SCG events were identified and segmented using ECG events. SCG waveforms during regular breathing were separated into two clusters using unsupervised machine learning. The variability was assessed for the clustered and un-clustered SCG by analyzing the Dynamic Time Warping (DTW) distances of SCG waveforms in the time domain. The inter-group variability between the normal breathing clusters and breath hold suggested that cluster 2 events were more similar to end expiration events while no clear trend was observed for cluster 1. The intra-group variability was reduced by approximately 19% for regular breathing clusters and 42% during breath hold compared to the unclustered SCG during normal breathing. The reduced variability during breath hold suggests the utility of SCG recording at breath hold since variability reduction can lead to more robust methods for longitudinal patient monitoring.","PeriodicalId":143197,"journal":{"name":"2019 IEEE Signal Processing in Medicine and Biology Symposium (SPMB)","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126482805","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
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