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Whole Genome Sequencing of a Non-O1/O139-Group Vibrio cholerae Isolated from a Patient with a Bloodstream Infection. 血液感染患者分离的非o1 / o139群霍乱弧菌的全基因组测序
IF 2.9 3区 医学
Infection and Drug Resistance Pub Date : 2024-12-19 eCollection Date: 2024-01-01 DOI: 10.2147/IDR.S500969
Sipei Wang, Shanshan Jin, Xiangjin Zhu, Yuan Li, Xinling Pan
{"title":"Whole Genome Sequencing of a Non-O1/O139-Group <i>Vibrio cholerae</i> Isolated from a Patient with a Bloodstream Infection.","authors":"Sipei Wang, Shanshan Jin, Xiangjin Zhu, Yuan Li, Xinling Pan","doi":"10.2147/IDR.S500969","DOIUrl":"10.2147/IDR.S500969","url":null,"abstract":"<p><strong>Background: </strong>Diarrhea caused by non-O1/O139-group <i>V. cholera</i>e (NOVC) tends to be mild and can be readily overlooked. In this report, a NOVC strain designated XXM was isolated from the blood of a 68-year-old male undergoing surgical treatment for a bile duct malignancy in October 2023.</p><p><strong>Methods: </strong>XXM was identified through a matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS). Virulence genes were detected using a <i>V. cholerae ctxA/ctxB</i> virulence gene dual real-time fluorescent PCR kit. AST-GN13 and AST-GN334 cards were used to test the resistance against 16 antibiotics with a Vitek2 compact system. The genomic and phylogenetic characteristics of XXM were established through whole genome sequencing (WGS).</p><p><strong>Results: </strong>Serum agglutination tests revealed the isolate to be a non-O1/non-O139 strain. The strain was sensitive to all 16 tested antibiotics and did not carry the <i>ctxA/ctxB</i> gene. MLST analyses identified the XXM strain as ST1538. WGS analyses identified 8 classes of virulence genes with different functions. A total of 3.541 bacterial genes, including 3.482 from <i>V. cholerae</i>, were annoted using the Non-Redundant Protein Sequence (NR) database. Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses annotated 32 genes including 17 key proteins involved in the <i>V. cholerae</i> biofilm pathway. Comparative analyses using the Pathogen Host Interactions Database (PHI) identified the <i>YbeY</i> gene. Evolutionary genealogy of genes: Non-supervised Orthologous Groups (eggNOG) was used to annotate 3280 genes in 21 categories. Phylogenetic analyses revealed that strain XXM was closely related to <i>V. cholerae</i> strain Man9.</p><p><strong>Conclusion: </strong>The XXM carries multiple virulence genes, and this genomic analysis of the XXM in comparison with other NOVC strains provides important information for an improved understanding of the pathogenicity of NOVC in clinical samples.</p>","PeriodicalId":13577,"journal":{"name":"Infection and Drug Resistance","volume":"17 ","pages":"5629-5637"},"PeriodicalIF":2.9,"publicationDate":"2024-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11668919/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142894170","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diagnosis of Neurological Involvement Caused by Streptococcus dysgalactiae: A Case Report and Review of the Literature. 诊断由痢疾链球菌引起的神经系统受累:病例报告和文献综述。
IF 2.9 3区 医学
Infection and Drug Resistance Pub Date : 2024-12-19 eCollection Date: 2024-01-01 DOI: 10.2147/IDR.S493557
Jia Zhou, Xiaoqi Ding, Xinmiao Jia, Hongli Sun
{"title":"Diagnosis of Neurological Involvement Caused by <i>Streptococcus dysgalactiae</i>: A Case Report and Review of the Literature.","authors":"Jia Zhou, Xiaoqi Ding, Xinmiao Jia, Hongli Sun","doi":"10.2147/IDR.S493557","DOIUrl":"10.2147/IDR.S493557","url":null,"abstract":"<p><strong>Purpose: </strong>This study investigated the clinical relevance, pathogenic mechanisms, and neurological involvement of <i>Streptococcus dysgalactiae</i> subspecies <i>equisimilis</i> (<i>SDSE</i>) and subspecies <i>dysgalactiae</i> (<i>SDSD</i>), with a focus on a severe case of <i>SDSE</i> meningitis complicated by septic shock.</p><p><strong>Patients and methods: </strong>A systematic review of 19 cases of neurological infections caused by <i>S. dysgalactiae</i> (<i>SDSE</i> or <i>SDSD</i>) from 1971 to 2023 was conducted, supplemented by a detailed case report. Data on patient demographics, predisposing factors, clinical manifestations, diagnostic procedures, treatment, and outcomes were analyzed.</p><p><strong>Results: </strong>The reviewed cases involved 12 patients with <i>SDSE</i> and seven with <i>SDSD</i>. The median age was 53 years, and most patients had underlying conditions such as diabetes, malignancy, or cardiovascular disease. Neurological manifestations were common, with meningitis being diagnosed in 17 patients. Despite prompt antibiotic therapy, six patients (32%) died, highlighting the severe nature of these infections.</p><p><strong>Conclusion: </strong><i>S. dysgalactiae</i> can cause severe neurological infections, particularly in immunocompromised patients. Early recognition and aggressive treatment are essential to improving outcomes. Advanced molecular diagnostic techniques, such as next-generation sequencing (NGS), are crucial in identifying and managing these infections.</p>","PeriodicalId":13577,"journal":{"name":"Infection and Drug Resistance","volume":"17 ","pages":"5649-5661"},"PeriodicalIF":2.9,"publicationDate":"2024-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11665141/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142881727","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Changes in Clinical Features and Severity of COVID-19 with the Emergence of Omicron Variants: A Shift Towards a Common Disease. 随着组粒变异的出现,COVID-19临床特征和严重程度的变化:向常见疾病的转变
IF 2.9 3区 医学
Infection and Drug Resistance Pub Date : 2024-12-18 eCollection Date: 2024-01-01 DOI: 10.2147/IDR.S492816
Saori Kawamura, Fumihiro Yamaguchi, Rui Kusakado, Yoshihiro Go, Shiho Nohmi, Chinatsu Yoshizaki, Yuki Yoshida, Kensuke Izumizaki, Yuichiro Saito, Hitoshi Kobayashi, Kento Hirata, Kenta Miyo, Chika Kondo, Mamiko Kanzaki, Yize Ding, Takuya Yokoe, Sei Kobayashi, Hiroshi Suzuki
{"title":"Changes in Clinical Features and Severity of COVID-19 with the Emergence of Omicron Variants: A Shift Towards a Common Disease.","authors":"Saori Kawamura, Fumihiro Yamaguchi, Rui Kusakado, Yoshihiro Go, Shiho Nohmi, Chinatsu Yoshizaki, Yuki Yoshida, Kensuke Izumizaki, Yuichiro Saito, Hitoshi Kobayashi, Kento Hirata, Kenta Miyo, Chika Kondo, Mamiko Kanzaki, Yize Ding, Takuya Yokoe, Sei Kobayashi, Hiroshi Suzuki","doi":"10.2147/IDR.S492816","DOIUrl":"10.2147/IDR.S492816","url":null,"abstract":"<p><strong>Background: </strong>The emergence of the Omicron variant of severe acute respiratory syndrome coronavirus-2 has significantly altered the clinical features and severity of coronavirus disease 2019 (COVID-19).</p><p><strong>Objective: </strong>This study aims to evaluate whether the clinical factors that previously predicted COVID-19 remain valid following the emergence of the Omicron variant.</p><p><strong>Methods: </strong>This cross-sectional study was conducted at Showa University Fujigaoka Hospital from April 2022 to March 2023. A total of 576 patients with suspected COVID-19 were included, of which 258 (44.8%) were diagnosed with COVID-19 based on real-time reverse-transcription polymerase chain reaction tests. Clinical data were collected retrospectively, and multivariate logistic regression was used to analyze factors associated with a COVID-19 diagnosis.</p><p><strong>Results: </strong>Of the 258 patients diagnosed with COVID-19, 60% had mild disease, and the overall severity was lower than in previous reports prior to the emergence of the Omicron variant. In the multivariate analysis, only C-reactive protein (CRP) levels were significantly associated with COVID-19 (odds ratio, 0.3164; 95% confidence interval, 0.2077-0.4819), while factors such as age, sex, body mass index, lactate dehydrogenase, and comorbidities were not significantly associated. Non-COVID-19 cases were primarily bacterial infections, accounting for 57.2% of the non-COVID-19 diagnoses. Mortality rates did not differ significantly between the COVID-19 and non-COVID-19 groups.</p><p><strong>Conclusion: </strong>The clinical characteristics of COVID-19 have become less distinct since the emergence of the Omicron variant, with CRP being the primary marker associated with a COVID-19 diagnosis. As COVID-19 continues to transition towards a more common infectious disease, distinguishing it will become increasingly challenging.</p>","PeriodicalId":13577,"journal":{"name":"Infection and Drug Resistance","volume":"17 ","pages":"5595-5603"},"PeriodicalIF":2.9,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11663384/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142876964","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antimicrobial Resistance Levels of Non-Tuberculous Bacteria Isolates from Sputum of TB Patients in Ghana. 加纳结核病患者痰中分离的非结核细菌的抗微生物药物耐药性水平
IF 2.9 3区 医学
Infection and Drug Resistance Pub Date : 2024-12-18 eCollection Date: 2024-01-01 DOI: 10.2147/IDR.S483529
Portia Abena Morgan, Desmond Opoku Ntiamoah, Prince Asare, Ishaque Siam Mintah, Stephen Osei-Wusu, Augustine Asare Boadu, Emelia Konadu Danso, Ivy Naa Koshie Lamptey, Emmanuel Afreh, Amanda Tetteh, Adwoa Asante-Poku, Isaac Darko Otchere, Dorothy Yeboah-Manu
{"title":"Antimicrobial Resistance Levels of Non-Tuberculous Bacteria Isolates from Sputum of TB Patients in Ghana.","authors":"Portia Abena Morgan, Desmond Opoku Ntiamoah, Prince Asare, Ishaque Siam Mintah, Stephen Osei-Wusu, Augustine Asare Boadu, Emelia Konadu Danso, Ivy Naa Koshie Lamptey, Emmanuel Afreh, Amanda Tetteh, Adwoa Asante-Poku, Isaac Darko Otchere, Dorothy Yeboah-Manu","doi":"10.2147/IDR.S483529","DOIUrl":"10.2147/IDR.S483529","url":null,"abstract":"<p><strong>Background: </strong>Patients with tuberculosis (TB) often harbor diverse bacteria in their sputum, including both commensal and opportunistic pathogens. This study aimed to characterize the sputum microbiota of TB patients before and after the intensive phase of anti-TB treatment and assess changes in bacterial diversity and antibiotic resistance profiles.</p><p><strong>Methods: </strong>A total of 162 patients with TB (128 males, 34 females; age range 18-82 years) provided sputum samples at baseline, of which 72 provided follow-up sputum after two months of intensive phase treatment. Sputum samples were cultured on standard agar plates, and distinct colonies were identified by Gram staining and bio-typing using MALDI-TOF mass spectrometry. Antibiotic susceptibility testing of the identified Gram-positive and Gram-negative bacteria was performed using the Kirby-Bauer method according to the CLSI guidelines.</p><p><strong>Results: </strong>At baseline, 209 bacterial isolates were recovered, dominated by Gram-positive bacteria (GPB), particularly <i>Streptococcus oralis</i> (19.6%) and <i>Staphylococcus aureus</i> (13.9%). After treatment, the isolation rate significantly decreased (from 129% to 95.8%; p = 0.000002), with a shift towards Gram-negative bacteria (GNB) dominated by <i>E. coli</i>. High rates of antibiotic resistance were observed for both the GNB and GPB, notably to ampicillin (86.7%), tetracycline (74%), amoxicillin (70.3%), and sulfamethoxazole (63%) for GNP, and PEN (76.9%) for the GPB. 53% of <i>S. aureus</i> isolates were phenotypic Methicillin-resistant <i>S. aureus</i> (MRSA) and 57.7% of suspected extended-spectrum <i>Beta-lactamase</i> (ESBL) producers were confirmed positive, predominantly carrying the <i>blaCTX-M-1</i> gene.</p><p><strong>Conclusion: </strong>The observed antibiotic resistance among the identified isolates, including MRSA and ESBL, underscores the need for routine antibiotic susceptibility testing and judicious antibiotic use in Ghana. Further research is needed to explore the long-term consequences of these microbiome shifts on TB treatment outcomes and risk of secondary infections.</p>","PeriodicalId":13577,"journal":{"name":"Infection and Drug Resistance","volume":"17 ","pages":"5663-5673"},"PeriodicalIF":2.9,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11664477/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142881539","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparing the Performance of Two Cryptococcal Antigen Detection Tests: Chemiluminescence vs Colloidal Gold Methods. 两种隐球菌抗原检测方法的性能比较:化学发光法与胶体金法。
IF 2.9 3区 医学
Infection and Drug Resistance Pub Date : 2024-12-18 eCollection Date: 2024-01-01 DOI: 10.2147/IDR.S491846
Xiao-Yun Yu, Lei Zhang, Yueyue Hu, Zhongliang Zhu, Yongze Zhu, Xi Li
{"title":"Comparing the Performance of Two Cryptococcal Antigen Detection Tests: Chemiluminescence vs Colloidal Gold Methods.","authors":"Xiao-Yun Yu, Lei Zhang, Yueyue Hu, Zhongliang Zhu, Yongze Zhu, Xi Li","doi":"10.2147/IDR.S491846","DOIUrl":"10.2147/IDR.S491846","url":null,"abstract":"<p><strong>Objective: </strong>To compare the performance of a new chemiluminescence method with that of the traditional colloidal gold method for cryptococcal antigen (CrAg) detection.</p><p><strong>Methods: </strong>Cryptococcosis is a global invasive mycosis associated with significant morbidity and mortality. Cryptococcal antigen (CrAg) testing from serum and cerebrospinal fluid (CSF) has been regarded as the gold standard for early diagnosis. In this study, a total of 140 samples (92 serum and 48 cerebrospinal fluid samples) from 140 patients with suspected cryptococcosis collected between January 2022 and September 2023 at Zhejiang Provincial People's Hospital were tested via a fully automated chemiluminescent immunoassay analyser (SuperFlex) from Suzhou Xinbo and a cryptococcal antigen detection kit (colloidal gold method) from the IMMY Company of the United States.</p><p><strong>Results: </strong>According to the diagnostic criteria for cryptococcosis, 55 of the 140 suspected patients were diagnosed with cryptococcosis (39.3%), including 47 with pulmonary cryptococcosis (PC) and 8 with cryptococcal meningitis (CM). The degree of agreement between chemiluminescence and the colloidal gold method was analysed via Cohen's kappa coefficient, which was 0.970 (P<0.01). The sensitivities of the chemiluminescence and colloidal gold methods were 98.2% and 96.4%, respectively, and their specificities were 100% and 98.8%, respectively. The area under the receiver operating characteristic (ROC) curve were 0.996 for chemiluminescence and 0.9759 for the colloidal gold method. The area under the curve (AUC) of the two methods did not differ significantly (P=0.086).</p><p><strong>Conclusion: </strong>For the detection of CrAg, the new chemiluminescence method is highly consistent with the traditional colloidal gold method and has higher sensitivity and specificity for the diagnosis of cryptococcosis.</p>","PeriodicalId":13577,"journal":{"name":"Infection and Drug Resistance","volume":"17 ","pages":"5639-5647"},"PeriodicalIF":2.9,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11663370/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142876965","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Quantifying the Long and Short Axes of the External Iliac Lymph Nodes Using Dual-Energy Computed Tomography: A Potential Diagnostic Approach for Periprosthetic Joint Infection - A Prospective Study. 使用双能量计算机断层扫描量化髂外淋巴结的长轴和短轴:一种潜在的假体周围关节感染诊断方法-一项前瞻性研究。
IF 2.9 3区 医学
Infection and Drug Resistance Pub Date : 2024-12-17 eCollection Date: 2024-01-01 DOI: 10.2147/IDR.S497736
Yaji Yang, Haotian Zhou, Runxing Kang, Chen Zhao, Jia Li, Feilong Li, Yidong Shen, Yuelong Chen, Wei Huang, Leilei Qin
{"title":"Quantifying the Long and Short Axes of the External Iliac Lymph Nodes Using Dual-Energy Computed Tomography: A Potential Diagnostic Approach for Periprosthetic Joint Infection - A Prospective Study.","authors":"Yaji Yang, Haotian Zhou, Runxing Kang, Chen Zhao, Jia Li, Feilong Li, Yidong Shen, Yuelong Chen, Wei Huang, Leilei Qin","doi":"10.2147/IDR.S497736","DOIUrl":"10.2147/IDR.S497736","url":null,"abstract":"<p><strong>Purpose: </strong>Periprosthetic joint infection (PJI) is a severe complication following joint replacement surgery, and there is a current lack of rapid, accurate, and non-invasive diagnostic methods. This study aims to assess the effectiveness of using dual-energy computed tomography (DECT) to quantify the maximum long and short axes of the external iliac lymph nodes (LNs) as a diagnostic tool for PJI.</p><p><strong>Patients and methods: </strong>In this prospective controlled study, 112 patients undergoing total hip or total knee revision surgery were enrolled. All patients underwent preoperative DECT scanning to measure the maximum long and short axes of the external iliac LNs on the affected side. The diagnostic value of lymph node size for PJI was assessed using receiver operating characteristic curves.</p><p><strong>Results: </strong>The AUC (Area Under the Curve) quantifies the diagnostic method's ability to distinguish between positive and negative outcomes in this study. A value closer to 1.0 indicates better discriminatory performance. Compared to erythrocyte sedimentation rate (Area Under the Curve (AUC) = 0.834), percentage of polymorphonuclear leukocytes (AUC = 0.621), and C-reactive protein (AUC = 0.765), the maximum long axis (AUC =0.895) and maximum short axis (AUC = 0.858) of the external iliac LNs better differentiated PJI from aseptic failure. For diagnosing PJI, the threshold for the maximum long axis of the LNs was 20.5 mm, with a sensitivity of 84.21% and a specificity of 87.84%. For the maximum short axis, the threshold was 8.5 mm, with a sensitivity of 89.47% and a specificity of 82.43%. Combining the maximum long and short axes of the external iliac LNs enhanced the diagnostic accuracy for PJI.</p><p><strong>Conclusion: </strong>Measuring the long and short axes of external iliac LNs using DECT is an effective diagnostic approach for PJI, aiding in the differentiation between PJI and aseptic failure following joint replacement surgery.</p>","PeriodicalId":13577,"journal":{"name":"Infection and Drug Resistance","volume":"17 ","pages":"5605-5617"},"PeriodicalIF":2.9,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11663990/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142881766","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Analysis of Mutations in Pneumocystis jirovecii Dihydropteroate Synthase and Dihydropteroate Reductase Genes Among Non-HIV Patients in China. 中国非hiv感染者肺囊虫二氢蝶呤合成酶和二氢蝶呤还原酶基因突变分析。
IF 2.9 3区 医学
Infection and Drug Resistance Pub Date : 2024-12-17 eCollection Date: 2024-01-01 DOI: 10.2147/IDR.S491478
Yun Wu, Huixin Shi, Wei Li, Yijun An, Yuhan Shao, Xia Rao, Nicholas R Waterfield, Wei Wang, Guowei Yang
{"title":"Analysis of Mutations in <i>Pneumocystis jirovecii</i> Dihydropteroate Synthase and Dihydropteroate Reductase Genes Among Non-HIV Patients in China.","authors":"Yun Wu, Huixin Shi, Wei Li, Yijun An, Yuhan Shao, Xia Rao, Nicholas R Waterfield, Wei Wang, Guowei Yang","doi":"10.2147/IDR.S491478","DOIUrl":"10.2147/IDR.S491478","url":null,"abstract":"<p><strong>Purpose: </strong><i>Pneumocystis jirovecii</i> pneumonia (PJP) shows a high fatality rate in non-HIV patients. However, there are limited data on <i>P. jirovecii</i> drug resistance-related gene mutations in these patients. This study aimed to describe the prevalence of mutations in the dihydrofolate reductase (DHFR) and dihydropteroate synthase (DHPS) genes of <i>P. jirovecii</i> in non-HIV patients in China, providing a reference for drug usage.</p><p><strong>Methods: </strong>We analyzed the polymorphisms of DHPS and DHFR genes from 45 non-HIV patients in China, including <i>P. jirovecii</i> infection (n = 14) and <i>P. jirovecii</i> colonization (n = 31). This analysis also considered clinical characteristics, <i>P. jirovecii</i> burden, treatment response, and prognosis.</p><p><strong>Results: </strong>Compared to the <i>P. jirovecii</i> colonization, <i>P. jirovecii</i> infection had significantly altered blood indicators (GR%, LY%, HGB, TP, ALB, CRP, <i>P</i><0.05) with higher <i>P. jirovecii</i> burden (<i>P</i><0.05) and worse prognosis (<i>P</i><0.05). Additionally, patients with <i>P. jirovecii</i> infection were more susceptible to infections, such as the Epstein-Barr virus, Cytomegalovirus, Mycoplasma and Klebsiella pneumoniae. Although no known drug-resistance mutations were detected in the DHPS gene in this study, 10 nonsynonymous mutations were identified. Furthermore, 10 nonsynonymous and 2 synonymous mutations were found in the DHFR gene. However, these mutations were not associated with a worse prognosis.</p><p><strong>Conclusion: </strong>Our results implied that TMP-SMX prophylaxis is still recommended for PJP in high-risk non-HIV patients in China.</p>","PeriodicalId":13577,"journal":{"name":"Infection and Drug Resistance","volume":"17 ","pages":"5619-5627"},"PeriodicalIF":2.9,"publicationDate":"2024-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11662679/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142876961","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Amphotericin B Colloidal Dispersion is Efficacious and Safe for the Management of Talaromycosis in HIV-Infected Patients: Results of a Retrospective Cohort Study in China. 两性霉素B胶体分散剂对hiv感染患者治疗塔氏菌病有效且安全:中国一项回顾性队列研究的结果
IF 2.9 3区 医学
Infection and Drug Resistance Pub Date : 2024-12-14 eCollection Date: 2024-01-01 DOI: 10.2147/IDR.S481856
Min Liu, Honghong Yang, Qian Liu, Kun He, Jing Yuan, Yaokai Chen
{"title":"Amphotericin B Colloidal Dispersion is Efficacious and Safe for the Management of Talaromycosis in HIV-Infected Patients: Results of a Retrospective Cohort Study in China.","authors":"Min Liu, Honghong Yang, Qian Liu, Kun He, Jing Yuan, Yaokai Chen","doi":"10.2147/IDR.S481856","DOIUrl":"10.2147/IDR.S481856","url":null,"abstract":"<p><strong>Background: </strong>Amphotericin B deoxycholate (AmB-D) have potential toxic effects in the treatment of talaromycosis, and high-quality, non-generic liposomal AmB (L-AMB) is still inaccessible in many regions of China. As such, the efficacy and safety of alternative drugs warrant further investigation for the management of talaromycosis. This study aimed to compare the efficacy and safety of Amphotericin B Colloidal Dispersion (ABCD) and AmB-D for the treatment of talaromycosis in a retrospective cohort of HIV-infected patients.</p><p><strong>Methods: </strong>This was a retrospective study and the data of HIV-infected patients with talaromycosis who received ABCD or AmB-D from January 2018 to December 2022, were retrospectively collected and analyzed. We compared the efficacy and safety of the two antifungal drugs.</p><p><strong>Results: </strong>Overall, 38 patients receiving ABCD and 33 patients receiving AmB-D were included. The conversion rates to fungal negativity at one week post-treatment were 86.84% (33/38) in the ABCD group and 90.09% (30/33) in the AmB-D group, which reached 100.00% in both groups at two weeks post-treatment. A higher symptom remission rate was observed at two weeks in the ABCD group compared with the AmB-D group (94.74% vs 75.76%; <i>p</i>=0.003). Additionally, the serum creatinine level significantly increased from baseline in the AmB-D group, whereas it did not increase significantly in the ABCD group. Furthermore, significantly fewer patients discontinued antifungal treatment due to drug intolerance in the ABCD group, and the incidences of leukopenia and elevated creatinine levels were lower in the ABCD group compared with the AmB-D group.</p><p><strong>Conclusion: </strong>ABCD has a clinical efficacy comparable to AmB-D, with higher symptom remission rate, lower nephrotoxicity, and lower bone marrow suppression, indicating that ABCD may be an appropriate alternative option for the clinical management of talaromycosis.</p>","PeriodicalId":13577,"journal":{"name":"Infection and Drug Resistance","volume":"17 ","pages":"5581-5593"},"PeriodicalIF":2.9,"publicationDate":"2024-12-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11653854/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142854103","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Functional Study of desKR: A Lineage-Specific Two-Component System Positively Regulating Staphylococcus Aureus Biofilm Formation [Retraction]. desKR的功能研究:一个谱系特异性双组分系统正调控金黄色葡萄球菌生物膜形成[撤回]。
IF 2.9 3区 医学
Infection and Drug Resistance Pub Date : 2024-12-13 eCollection Date: 2024-01-01 DOI: 10.2147/IDR.S509159
{"title":"Functional Study of <i>desKR</i>: A Lineage-Specific Two-Component System Positively Regulating <i>Staphylococcus Aureus</i> Biofilm Formation [Retraction].","authors":"","doi":"10.2147/IDR.S509159","DOIUrl":"https://doi.org/10.2147/IDR.S509159","url":null,"abstract":"<p><p>[This retracts the article DOI: 10.2147/IDR.S485049.].</p>","PeriodicalId":13577,"journal":{"name":"Infection and Drug Resistance","volume":"17 ","pages":"5579-5580"},"PeriodicalIF":2.9,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11652790/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142854106","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Impact of COVID-19 on Pneumococcal Acute Otitis Media, Antibiotic Resistance, and Vaccination in Children. COVID-19对儿童肺炎球菌急性中耳炎、抗生素耐药性和疫苗接种的影响
IF 2.9 3区 医学
Infection and Drug Resistance Pub Date : 2024-12-13 eCollection Date: 2024-01-01 DOI: 10.2147/IDR.S496057
Loredana Stavar-Matei, Oana-Mariana Mihailov, Aurel Nechita, Alexandra Mihaela Crestez, George Tocu
{"title":"Impact of COVID-19 on Pneumococcal Acute Otitis Media, Antibiotic Resistance, and Vaccination in Children.","authors":"Loredana Stavar-Matei, Oana-Mariana Mihailov, Aurel Nechita, Alexandra Mihaela Crestez, George Tocu","doi":"10.2147/IDR.S496057","DOIUrl":"10.2147/IDR.S496057","url":null,"abstract":"<p><p>Streptococcus pneumoniae is the main pathogen that plays a dual role, on the one hand as an asymptomatic carrier in the nasopharyngeal mucosa and on the other hand directly responsible for triggering invasive pneumococcal infections with various important localizations, especially in the pediatric population. Thus, invasive pneumococcal infections represent one of the main causes of mortality and morbidity in children under 5 years of age. Immunization is a key preventive measure against these infections. The evolution of these infections caused by S. pneumoniae is influenced both directly and indirectly by several factors: the immunization status of the patient, the regional and seasonal distribution of pneumococcal serotypes, susceptibility to anti-biotics, the existence of viral or bacterial co-infections and the socio-economic conditions specific to each region. This review gathers the current open-access PubMed evidence on the incidence of invasive pneumococcal infections and their susceptibility to antibiotics in the 0-5 age group during and after the COVID-19 pandemic. We have chosen this association with the SARS-COV- 2 virus because this pandemic has caused major changes on all personal, social, professional, and medical levels worldwide. Both pneumococcal disease and COVID-19 have similar risk factors, and S. pneumoniae was one of the most common co-infecting agents during the COVID-19 pandemic. The attention was focused on 8 clinical trials published in the pre- and post COVID-19 period that had as main subject acute otitis media caused by Streptococcus pneumoniae in children aged 0-5 years. The studies were collected from different geographical regions, both from socio-economically developed and developing countries such as Niger, Malawi, China and Papua New Guinea, Japan, Australia, Italy, in order to have a global overview. In conclusion, the COVID-19 pandemic had a major impact on the quality of life of pediatric patients diagnosed with pneumococcal acute otitis media both in terms of non-vaccine serotypes and antimicrobial resistance.</p>","PeriodicalId":13577,"journal":{"name":"Infection and Drug Resistance","volume":"17 ","pages":"5567-5578"},"PeriodicalIF":2.9,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11651131/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142846246","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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