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Functional specialisation and coordination of myonuclei 肌核的功能特化与协调
IF 11 1区 生物学
Biological Reviews Pub Date : 2024-03-13 DOI: 10.1111/brv.13063
Amaury Korb, Shahragim Tajbakhsh, Glenda E. Comai
{"title":"Functional specialisation and coordination of myonuclei","authors":"Amaury Korb,&nbsp;Shahragim Tajbakhsh,&nbsp;Glenda E. Comai","doi":"10.1111/brv.13063","DOIUrl":"10.1111/brv.13063","url":null,"abstract":"<div>\u0000 \u0000 <p>Myofibres serve as the functional unit for locomotion, with the sarcomere as fundamental subunit. Running the entire length of this structure are hundreds of myonuclei, located at the periphery of the myofibre, juxtaposed to the plasma membrane. Myonuclear specialisation and clustering at the centre and ends of the fibre are known to be essential for muscle contraction, yet the molecular basis of this regionalisation has remained unclear. While the ‘myonuclear domain hypothesis’ helped explain how myonuclei can independently govern large cytoplasmic territories, novel technologies have provided granularity on the diverse transcriptional programs running simultaneously within the syncytia and added a new perspective on how myonuclei communicate. Building upon this, we explore the critical cellular and molecular sources of transcriptional and functional heterogeneity within myofibres, discussing the impact of intrinsic and extrinsic factors on myonuclear programs. This knowledge provides new insights for understanding muscle development, repair, and disease, but also opens avenues for the development of novel and precise therapeutic approaches.</p>\u0000 </div>","PeriodicalId":133,"journal":{"name":"Biological Reviews","volume":"99 4","pages":"1164-1195"},"PeriodicalIF":11.0,"publicationDate":"2024-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140108539","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Overcoming confusion and stigma in habitat fragmentation research 克服生境破碎化研究中的困惑和污名。
IF 11 1区 生物学
Biological Reviews Pub Date : 2024-03-13 DOI: 10.1111/brv.13073
Federico Riva, Nicola Koper, Lenore Fahrig
{"title":"Overcoming confusion and stigma in habitat fragmentation research","authors":"Federico Riva,&nbsp;Nicola Koper,&nbsp;Lenore Fahrig","doi":"10.1111/brv.13073","DOIUrl":"10.1111/brv.13073","url":null,"abstract":"<p>Anthropogenic habitat loss is widely recognized as a primary environmental concern. By contrast, debates on the effects of habitat fragmentation persist. To facilitate overcoming these debates, here we: (<i>i</i>) review the state of the literature on habitat fragmentation, finding widespread confusion and stigma; (<i>ii</i>) identify consequences of this for biodiversity conservation and ecosystem management; and (<i>iii</i>) suggest ways in which research can move forward to resolve these problems.</p><p>Confusion is evident from the 25 most-cited fragmentation articles published between 2017 and 2021. These articles use five distinct concepts of habitat fragmentation, only one of which clearly distinguishes habitat fragmentation from habitat area and other factors (‘fragmentation <i>per se</i>’). Stigmatization is evident from our new findings that fragmentation papers are more charged with negative sentiments when compared to papers from other subfields in the environmental sciences, and that fragmentation papers with more negative sentiments are cited more.</p><p>While most empirical studies of habitat fragmentation <i>per se</i> find neutral or positive effects on species and biodiversity outcomes, which implies that small habitat patches have a high cumulative value, confusion and stigma in reporting and discussing such results have led to suboptimal habitat protection policy. For example, government agencies, conservation organizations, and land trusts impose minimum habitat patch sizes on habitat protection. Given the high cumulative value of small patches, such policies mean that many opportunities for conservation are being missed.</p><p>Our review highlights the importance of reducing confusion and stigma in habitat fragmentation research. To this end, we propose implementing study designs in which multiple sample landscapes are selected across independent gradients of habitat amount and fragmentation, measured as patch density. We show that such designs are possible for forest habitat across Earth's biomes. As such study designs are adopted, and as language becomes more precise, we expect that confusion and stigma in habitat fragmentation research will dissipate. We also expect important breakthroughs in understanding the situations where effects of habitat fragmentation <i>per se</i> are neutral, positive, or negative, and the reasons for these differences. Ultimately this will improve efficacy of area-based conservation policies, to the benefit of biodiversity and people.</p>","PeriodicalId":133,"journal":{"name":"Biological Reviews","volume":"99 4","pages":"1411-1424"},"PeriodicalIF":11.0,"publicationDate":"2024-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/brv.13073","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140108540","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Social life results in social stress protection: a novel concept to explain individual life-history patterns in social insects 社会生活导致社会压力保护:解释社会性昆虫个体生活史模式的新概念。
IF 11 1区 生物学
Biological Reviews Pub Date : 2024-03-11 DOI: 10.1111/brv.13074
Alexander Walton, Jacob J. Herman, Olav Rueppell
{"title":"Social life results in social stress protection: a novel concept to explain individual life-history patterns in social insects","authors":"Alexander Walton,&nbsp;Jacob J. Herman,&nbsp;Olav Rueppell","doi":"10.1111/brv.13074","DOIUrl":"10.1111/brv.13074","url":null,"abstract":"<p>Resistance to and avoidance of stress slow aging and confer increased longevity in numerous organisms. Honey bees and other superorganismal social insects have two main advantages over solitary species to avoid or resist stress: individuals can directly help each other by resource or information transfer, and they can cooperatively control their environment. These benefits have been recognised in the context of pathogen and parasite stress as the concept of social immunity, which has been extensively studied. However, we argue that social immunity is only a special case of a general concept that we define here as social stress protection to include group-level defences against all biotic and abiotic stressors. We reason that social stress protection may have allowed the evolution of reduced individual-level defences and individual life-history optimization, including the exceptional aging plasticity of many social insects. We describe major categories of stress and how a colonial lifestyle may protect social insects, particularly against temporary peaks of extreme stress. We use the honey bee (<i>Apis mellifera</i> L.) to illustrate how patterns of life expectancy may be explained by social stress protection and how modern beekeeping practices can disrupt social stress protection. We conclude that the broad concept of social stress protection requires rigorous empirical testing because it may have implications for our general understanding of social evolution and specifically for improving honey bee health.</p>","PeriodicalId":133,"journal":{"name":"Biological Reviews","volume":"99 4","pages":"1444-1457"},"PeriodicalIF":11.0,"publicationDate":"2024-03-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/brv.13074","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140100541","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diversity and function of fluorescent molecules in marine animals 海洋动物荧光分子的多样性和功能。
IF 11 1区 生物学
Biological Reviews Pub Date : 2024-03-11 DOI: 10.1111/brv.13072
Lars H. Poding, Peter Jägers, Stefan Herlitze, Mareike Huhn
{"title":"Diversity and function of fluorescent molecules in marine animals","authors":"Lars H. Poding,&nbsp;Peter Jägers,&nbsp;Stefan Herlitze,&nbsp;Mareike Huhn","doi":"10.1111/brv.13072","DOIUrl":"10.1111/brv.13072","url":null,"abstract":"<p>Fluorescence in marine animals has mainly been studied in Cnidaria but is found in many different phyla such as Annelida, Crustacea, Mollusca, and Chordata. While many fluorescent proteins and molecules have been identified, very little information is available about the biological functions of fluorescence. In this review, we focus on describing the occurrence of fluorescence in marine animals and the behavioural and physiological functions of fluorescent molecules based on experimental approaches. These biological functions of fluorescence range from prey and symbiont attraction, photoprotection, photoenhancement, stress mitigation, mimicry, and aposematism to inter- and intraspecific communication. We provide a comprehensive list of marine taxa that utilise fluorescence, including demonstrated effects on behavioural or physiological responses. We describe the numerous known functions of fluorescence in anthozoans and their underlying molecular mechanisms. We also highlight that other marine taxa should be studied regarding the functions of fluorescence. We suggest that an increase in research effort in this field could contribute to understanding the capacity of marine animals to respond to negative effects of climate change, such as rising sea temperatures and increasing intensities of solar irradiation.</p>","PeriodicalId":133,"journal":{"name":"Biological Reviews","volume":"99 4","pages":"1391-1410"},"PeriodicalIF":11.0,"publicationDate":"2024-03-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/brv.13072","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140100495","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Animal migration in the Anthropocene: threats and mitigation options 人类世的动物迁徙:威胁与缓解方案。
IF 11 1区 生物学
Biological Reviews Pub Date : 2024-03-04 DOI: 10.1111/brv.13066
Steven J. Cooke, Morgan L. Piczak, Navinder J. Singh, Susanne Åkesson, Adam T. Ford, Shawan Chowdhury, Greg W. Mitchell, D. Ryan Norris, Molly Hardesty-Moore, Douglas McCauley, Neil Hammerschlag, Marlee A. Tucker, Joshua J. Horns, Ryan R. Reisinger, Vojtěch Kubelka, Robert J. Lennox
{"title":"Animal migration in the Anthropocene: threats and mitigation options","authors":"Steven J. Cooke,&nbsp;Morgan L. Piczak,&nbsp;Navinder J. Singh,&nbsp;Susanne Åkesson,&nbsp;Adam T. Ford,&nbsp;Shawan Chowdhury,&nbsp;Greg W. Mitchell,&nbsp;D. Ryan Norris,&nbsp;Molly Hardesty-Moore,&nbsp;Douglas McCauley,&nbsp;Neil Hammerschlag,&nbsp;Marlee A. Tucker,&nbsp;Joshua J. Horns,&nbsp;Ryan R. Reisinger,&nbsp;Vojtěch Kubelka,&nbsp;Robert J. Lennox","doi":"10.1111/brv.13066","DOIUrl":"10.1111/brv.13066","url":null,"abstract":"<p>Animal migration has fascinated scientists and the public alike for centuries, yet migratory animals are facing diverse threats that could lead to their demise. The Anthropocene is characterised by the reality that humans are the dominant force on Earth, having manifold negative effects on biodiversity and ecosystem function. Considerable research focus has been given to assessing anthropogenic impacts on the numerical abundance of species/populations, whereas relatively less attention has been devoted to animal migration. However, there are clear linkages, for example, where human-driven impacts on migration behaviour can lead to population/species declines or even extinction. Here, we explore anthropogenic threats to migratory animals (in all domains – aquatic, terrestrial, and aerial) using International Union for the Conservation of Nature (IUCN) Threat Taxonomy classifications. We reveal the diverse threats (e.g. human development, disease, invasive species, climate change, exploitation, pollution) that impact migratory wildlife in varied ways spanning taxa, life stages and type of impact (e.g. from direct mortality to changes in behaviour, health, and physiology). Notably, these threats often interact in complex and unpredictable ways to the detriment of wildlife, further complicating management. Fortunately, we are beginning to identify strategies for conserving and managing migratory animals in the Anthropocene. We provide a set of strategies that, if embraced, have the potential to ensure that migratory animals, and the important ecological functions sustained by migration, persist.</p>","PeriodicalId":133,"journal":{"name":"Biological Reviews","volume":"99 4","pages":"1242-1260"},"PeriodicalIF":11.0,"publicationDate":"2024-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/brv.13066","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140026964","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Freshwater megafauna shape ecosystems and facilitate restoration 淡水巨型动物塑造生态系统,促进生态系统的恢复。
IF 11 1区 生物学
Biological Reviews Pub Date : 2024-02-27 DOI: 10.1111/brv.13062
Fengzhi He, Jens-Christian Svenning, Xing Chen, Klement Tockner, Tobias Kuemmerle, Elizabeth le Roux, Marcos Moleón, Jörn Gessner, Sonja C. Jähnig
{"title":"Freshwater megafauna shape ecosystems and facilitate restoration","authors":"Fengzhi He,&nbsp;Jens-Christian Svenning,&nbsp;Xing Chen,&nbsp;Klement Tockner,&nbsp;Tobias Kuemmerle,&nbsp;Elizabeth le Roux,&nbsp;Marcos Moleón,&nbsp;Jörn Gessner,&nbsp;Sonja C. Jähnig","doi":"10.1111/brv.13062","DOIUrl":"10.1111/brv.13062","url":null,"abstract":"<p>Freshwater megafauna, such as sturgeons, giant catfishes, river dolphins, hippopotami, crocodylians, large turtles, and giant salamanders, have experienced severe population declines and range contractions worldwide. Although there is an increasing number of studies investigating the causes of megafauna losses in fresh waters, little attention has been paid to synthesising the impacts of megafauna on the abiotic environment and other organisms in freshwater ecosystems, and hence the consequences of losing these species. This limited understanding may impede the development of policies and actions for their conservation and restoration. In this review, we synthesise how megafauna shape ecological processes in freshwater ecosystems and discuss their potential for enhancing ecosystem restoration. Through activities such as movement, burrowing, and dam and nest building, megafauna have a profound influence on the extent of water bodies, flow dynamics, and the physical structure of shorelines and substrata, increasing habitat heterogeneity. They enhance nutrient cycling within fresh waters, and cross-ecosystem flows of material, through foraging and reproduction activities. Freshwater megafauna are highly connected to other freshwater organisms <i>via</i> direct consumption of species at different trophic levels, indirect trophic cascades, and through their influence on habitat structure. The literature documenting the ecological impacts of freshwater megafauna is not evenly distributed among species, regions, and types of ecological impacts, with a lack of quantitative evidence for large fish, crocodylians, and turtles in the Global South and their impacts on nutrient flows and food-web structure. In addition, population decline, range contraction, and the loss of large individuals have reduced the extent and magnitude of megafaunal impacts in freshwater ecosystems, rendering <i>a posteriori</i> evaluation more difficult. We propose that reinstating freshwater megafauna populations holds the potential for restoring key ecological processes such as disturbances, trophic cascades, and species dispersal, which will, in turn, promote overall biodiversity and enhance nature's contributions to people. Challenges for restoration actions include the shifting baseline syndrome, potential human–megafauna competition for habitats and resources, damage to property, and risk to human life. The current lack of historical baselines for natural distributions and population sizes of freshwater megafauna, their life history, trophic interactions with other freshwater species, and interactions with humans necessitates further investigation. Addressing these knowledge gaps will improve our understanding of the ecological roles of freshwater megafauna and support their full potential for facilitating the development of effective conservation and restoration strategies to achieve the coexistence of humans and megafauna.</p>","PeriodicalId":133,"journal":{"name":"Biological Reviews","volume":"99 4","pages":"1141-1163"},"PeriodicalIF":11.0,"publicationDate":"2024-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/brv.13062","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139970146","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Demographic and evolutionary consequences of hunting of wild birds 猎杀野生鸟类对人口和进化的影响。
IF 11 1区 生物学
Biological Reviews Pub Date : 2024-02-26 DOI: 10.1111/brv.13069
Emilienne Grzegorczyk, Alain Caizergues, Cyril Eraud, Charlotte Francesiaz, Kévin Le Rest, Matthieu Guillemain
{"title":"Demographic and evolutionary consequences of hunting of wild birds","authors":"Emilienne Grzegorczyk,&nbsp;Alain Caizergues,&nbsp;Cyril Eraud,&nbsp;Charlotte Francesiaz,&nbsp;Kévin Le Rest,&nbsp;Matthieu Guillemain","doi":"10.1111/brv.13069","DOIUrl":"10.1111/brv.13069","url":null,"abstract":"<p>Hunting has a long tradition in human evolutionary history and remains a common leisure activity or an important source of food. Herein, we first briefly review the literature on the demographic consequences of hunting and associated analytical methods. We then address the question of potential selective hunting and its possible genetic/evolutionary consequences. Birds have historically been popular models for demographic studies, and the huge amount of census and ringing data accumulated over the last century has paved the way for research about the demographic effects of harvesting. By contrast, the literature on the evolutionary consequences of harvesting is dominated by studies on mammals (especially ungulates) and fish. In these taxa, individuals selected for harvest often have particular traits such as large body size or extravagant secondary sexual characters (e.g. antlers, horns, etc.). Our review shows that targeting individuals according to such genetically heritable traits can exert strong selective pressures and alter the evolutionary trajectory of populations for these or correlated traits. Studies focusing on the evolutionary consequences of hunting in birds are extremely rare, likely because birds within populations appear much more similar, and do not display individual differences to the same extent as many mammals and fishes. Nevertheless, even without conscious choice by hunters, there remains the potential for selection through hunting in birds, for example by genetically inherited traits such as personality or pace-of-life. We emphasise that because so many bird species experience high hunting pressure, the possible selective effect of harvest in birds and its evolutionary consequences deserves far more attention, and that hunting may be one major driver of bird evolutionary trajectories that should be carefully considered in wildlife management schemes.</p>","PeriodicalId":133,"journal":{"name":"Biological Reviews","volume":"99 4","pages":"1298-1313"},"PeriodicalIF":11.0,"publicationDate":"2024-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/brv.13069","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139970145","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Plant periderm as a continuum in structural organisation: a tracheophyte-wide survey and hypotheses on evolution 作为结构组织连续体的植物外皮:对整个气管植物的调查和进化假设。
IF 11 1区 生物学
Biological Reviews Pub Date : 2024-02-15 DOI: 10.1111/brv.13064
Madison A. K. Lalica, Alexandru M. F. Tomescu
{"title":"Plant periderm as a continuum in structural organisation: a tracheophyte-wide survey and hypotheses on evolution","authors":"Madison A. K. Lalica,&nbsp;Alexandru M. F. Tomescu","doi":"10.1111/brv.13064","DOIUrl":"10.1111/brv.13064","url":null,"abstract":"&lt;div&gt;\u0000 \u0000 &lt;p&gt;Periderm is a well-known structural feature with vital roles in protection of inner plant tissues and wound healing. Despite its importance to plant survival, knowledge of periderm occurrences outside the seed plants is limited and the evolutionary origins of periderm remain poorly explored. Here, we review the current knowledge of the taxonomic distribution of periderm in its two main forms – canonical periderm (periderm formed as a typical ontogenetic stage) and wound periderm (periderm produced as a self-repair mechanism) – with a focus on major plant lineages, living and extinct. We supplement the published occurrences with data based on our own observations and experiments. This updated body of data reveals that the distribution of wound periderm is more widespread taxonomically than previously recognized and some living and extinct groups are capable of producing wound periderm, despite canonical periderm being absent from their normal developmental program. A critical review of canonical and wound periderms in extant and fossil lineages indicates that not all periderms are created equal. Their organisation is widely variable and the differences can be characterised in terms of variations in three structural features: (&lt;i&gt;i&lt;/i&gt;) the consistency in orientation of periclinal walls within individual files of periderm cells; (&lt;i&gt;ii&lt;/i&gt;) the lateral coordination of periclinal walls between adjacent cell files; and (&lt;i&gt;iii&lt;/i&gt;) whether a cambial layer and conspicuous layering of inward and outward derivatives can be distinguished. Using a new system of scoring periderm structure based on these criteria, we characterise the level of organisation of canonical and wound periderms in different lineages. Looking at periderms through the lens provided by their level of organisation reveals that the traditional image of periderm as a single generalised feature, is best viewed as a continuum of structural configurations that are all predicated by the same basic process (periclinal divisions), but can fall anywhere between very loosely organized (diffuse periclinal growth) to very tightly coordinated (organized periclinal growth). Overall, wound periderms in both seed plants and seed-free plants have lower degrees of organisation than canonical periderms, which may be due to their initiation in response to inherently disruptive traumatic events. Wound and canonical periderms of seed plants have higher degrees of organisation than those of seed-free plants, possibly due to co-option of the programs responsible for organizing their vascular cambial growth. Given the importance of wound periderm to plant survival, its widespread taxonomic distribution, and its early occurrence in the fossil record, we hypothesise that wound periderm may have had a single origin in euphyllophytes and canonical periderm may have originated separately in different lineages by co-option of the basic regulatory toolkit of wound periderm formation. In o","PeriodicalId":133,"journal":{"name":"Biological Reviews","volume":"99 4","pages":"1196-1217"},"PeriodicalIF":11.0,"publicationDate":"2024-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139739919","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The global genetic diversity of planktonic foraminifera reveals the structure of cryptic speciation in plankton 浮游有孔虫的全球遗传多样性揭示了浮游生物隐性物种的结构。
IF 11 1区 生物学
Biological Reviews Pub Date : 2024-02-13 DOI: 10.1111/brv.13065
Raphaël Morard, Kate F. Darling, Agnes K. M. Weiner, Christiane Hassenrück, Chiara Vanni, Tristan Cordier, Nicolas Henry, Mattia Greco, Nele M. Vollmar, Tamara Milivojevic, Shirin Nurshan Rahman, Michael Siccha, Julie Meilland, Lukas Jonkers, Frédéric Quillévéré, Gilles Escarguel, Christophe J. Douady, Thibault de Garidel-Thoron, Colomban de Vargas, Michal Kucera
{"title":"The global genetic diversity of planktonic foraminifera reveals the structure of cryptic speciation in plankton","authors":"Raphaël Morard,&nbsp;Kate F. Darling,&nbsp;Agnes K. M. Weiner,&nbsp;Christiane Hassenrück,&nbsp;Chiara Vanni,&nbsp;Tristan Cordier,&nbsp;Nicolas Henry,&nbsp;Mattia Greco,&nbsp;Nele M. Vollmar,&nbsp;Tamara Milivojevic,&nbsp;Shirin Nurshan Rahman,&nbsp;Michael Siccha,&nbsp;Julie Meilland,&nbsp;Lukas Jonkers,&nbsp;Frédéric Quillévéré,&nbsp;Gilles Escarguel,&nbsp;Christophe J. Douady,&nbsp;Thibault de Garidel-Thoron,&nbsp;Colomban de Vargas,&nbsp;Michal Kucera","doi":"10.1111/brv.13065","DOIUrl":"10.1111/brv.13065","url":null,"abstract":"<p>The nature and extent of diversity in the plankton has fascinated scientists for over a century. Initially, the discovery of many new species in the remarkably uniform and unstructured pelagic environment appeared to challenge the concept of ecological niches. Later, it became obvious that only a fraction of plankton diversity had been formally described, because plankton assemblages are dominated by understudied eukaryotic lineages with small size that lack clearly distinguishable morphological features. The high diversity of the plankton has been confirmed by comprehensive metabarcoding surveys, but interpretation of the underlying molecular taxonomies is hindered by insufficient integration of genetic diversity with morphological taxonomy and ecological observations. Here we use planktonic foraminifera as a study model and reveal the full extent of their genetic diversity and investigate geographical and ecological patterns in their distribution. To this end, we assembled a global data set of ~7600 ribosomal DNA sequences obtained from morphologically characterised individual foraminifera, established a robust molecular taxonomic framework for the observed diversity, and used it to query a global metabarcoding data set covering ~1700 samples with ~2.48 billion reads. This allowed us to extract and assign 1 million reads, enabling characterisation of the structure of the genetic diversity of the group across ~1100 oceanic stations worldwide. Our sampling revealed the existence of, at most, 94 distinct molecular operational taxonomic units (MOTUs) at a level of divergence indicative of biological species. The genetic diversity only doubles the number of formally described species identified by morphological features. Furthermore, we observed that the allocation of genetic diversity to morphospecies is uneven. Only 16 morphospecies disguise evolutionarily significant genetic diversity, and the proportion of morphospecies that show genetic diversity increases poleward. Finally, we observe that MOTUs have a narrower geographic distribution than morphospecies and that in some cases the MOTUs belonging to the same morphospecies (cryptic species) have different environmental preferences. Overall, our analysis reveals that even in the light of global genetic sampling, planktonic foraminifera diversity is modest and finite. However, the extent and structure of the cryptic diversity reveals that genetic diversification is decoupled from morphological diversification, hinting at different mechanisms acting at different levels of divergence.</p>","PeriodicalId":133,"journal":{"name":"Biological Reviews","volume":"99 4","pages":"1218-1241"},"PeriodicalIF":11.0,"publicationDate":"2024-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/brv.13065","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139728552","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ecological restoration and rewilding: two approaches with complementary goals? 生态恢复和野化:目标互补的两种方法?
IF 1 1区 生物学
Biological Reviews Pub Date : 2024-02-12 DOI: 10.1111/brv.13046
Clémentine Mutillod, Élise Buisson, Gregory Mahy, Renaud Jaunatre, James M. Bullock, Laurent Tatin, Thierry Dutoit
{"title":"Ecological restoration and rewilding: two approaches with complementary goals?","authors":"Clémentine Mutillod,&nbsp;Élise Buisson,&nbsp;Gregory Mahy,&nbsp;Renaud Jaunatre,&nbsp;James M. Bullock,&nbsp;Laurent Tatin,&nbsp;Thierry Dutoit","doi":"10.1111/brv.13046","DOIUrl":"10.1111/brv.13046","url":null,"abstract":"<p>As we enter the UN Decade on Ecosystem Restoration (2021–2030) and address the urgent need to protect and restore ecosystems and their ecological functions at large scales, rewilding has been brought into the limelight. Interest in this discipline is thus increasing, with a large number of conceptual scientific papers published in recent years. Increasing enthusiasm has led to discussions and debates in the scientific community about the differences between ecological restoration and rewilding. The main goal of this review is to compare and clarify the position of each field. Our results show that despite some differences (e.g. top-down <i>versus</i> bottom-up and functional <i>versus</i> taxonomic approaches) and notably with distinct goals – recovery of a defined historically determined target ecosystem <i>versus</i> recovery of natural processes with often no target endpoint – ecological restoration and rewilding have a common scope: the recovery of ecosystems following anthropogenic degradation. The goals of ecological restoration and rewilding have expanded with the progress of each field. However, it is unclear whether there is a paradigm shift with ecological restoration moving towards rewilding or <i>vice versa</i>. We underline the complementarity in time and in space of ecological restoration and rewilding. To conclude, we argue that reconciliation of these two fields of nature conservation to ensure complementarity could create a synergy to achieve their common scope.</p>","PeriodicalId":133,"journal":{"name":"Biological Reviews","volume":"99 3","pages":"820-836"},"PeriodicalIF":10.0,"publicationDate":"2024-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/brv.13046","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139720899","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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