Genes, Chromosomes & Cancer最新文献

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Sporadic Breast Angiosarcoma With MYC Amplification on Extrachromosomal Circular DNA Detected Using Nanopore Sequencing in an Adolescent Female 利用纳米孔测序技术检测到一名青少年女性染色体外环状DNA上MYC扩增的散发性乳腺血管肉瘤
IF 3.1 2区 医学
Genes, Chromosomes & Cancer Pub Date : 2024-11-07 DOI: 10.1002/gcc.70004
Naohiro Makise, Jason Lin, Hajime Kageyama, Mariko Oikawa, Takahiro Sugiyama, Hidetada Kawana, Akinobu Araki, Shouko Hayama, Rikiya Nakamura, Hideyuki Kinoshita, Hiroto Kamoda, Yoko Hagiwara, Tsukasa Yonemoto, Masahito Kawazu, Makiko Itami
{"title":"Sporadic Breast Angiosarcoma With MYC Amplification on Extrachromosomal Circular DNA Detected Using Nanopore Sequencing in an Adolescent Female","authors":"Naohiro Makise,&nbsp;Jason Lin,&nbsp;Hajime Kageyama,&nbsp;Mariko Oikawa,&nbsp;Takahiro Sugiyama,&nbsp;Hidetada Kawana,&nbsp;Akinobu Araki,&nbsp;Shouko Hayama,&nbsp;Rikiya Nakamura,&nbsp;Hideyuki Kinoshita,&nbsp;Hiroto Kamoda,&nbsp;Yoko Hagiwara,&nbsp;Tsukasa Yonemoto,&nbsp;Masahito Kawazu,&nbsp;Makiko Itami","doi":"10.1002/gcc.70004","DOIUrl":"10.1002/gcc.70004","url":null,"abstract":"<div>\u0000 \u0000 <p>Angiosarcoma (AS) is a malignant vascular neoplasm comprising neoplastic endothelial cells accounting for 1%–4% of soft tissue sarcomas. While lymphedema-associated and post-irradiation ASs are almost always driven by a high-level amplification of <i>MYC</i> (8q24), sporadic ASs, including those of breast parenchymal origin, typically lack <i>MYC</i> amplification. Here, we report a case of sporadic breast <i>MYC</i>-amplified AS in a 19-year-old female with no history of lymphedema or irradiation, who was referred to our hospital for an enlarging right breast mass. After needle biopsy, the patient underwent right mastectomy and axillary lymphadenectomy. Microscopically, atypical endothelial cells proliferated and formed well-defined or slit-like vascular channels that invaded and dissected the breast parenchymal fat, ducts, and lobules. In a limited area, the tumor cells showed solid sheet-like proliferation with increased mitotic figures of 40 per 2 mm<sup>2</sup> with a small area of necrosis. Immunohistochemical analysis revealed strong positivity for c-Myc. Fluorescence in situ hybridization (FISH) with <i>MYC</i> break-apart probes showed a high-level 5′ single signal amplification. The patient was disease-free 16 months post-surgery. Nanopore sequencing successfully detected not only a high-level amplification of the 8q24 region, including <i>MYC</i>, but also multiple structural variants of the 8q24 region. In-depth analysis revealed extrachromosomal circular DNA amplification including the <i>MYC</i> protein-coding region and upstream region but not the downstream region. We also performed methylation classification using nanopore-based methylation data to successfully categorize the tumor as AS. This case report highlights the potential utility of nanopore sequencing in the diagnosis of sarcomas.</p>\u0000 </div>","PeriodicalId":12700,"journal":{"name":"Genes, Chromosomes & Cancer","volume":"63 11","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142604187","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Epigenetic Modeling of Jumping Translocations of 1q Heterochromatin in Acute Myeloid Leukemia After 5'-Azacytidine Treatment. 5'-氮杂胞苷治疗后急性髓性白血病 1q 异染色质跳跃易位的表观遗传学模型
IF 3.1 2区 医学
Genes, Chromosomes & Cancer Pub Date : 2024-11-01 DOI: 10.1002/gcc.70013
Anair Graciela Lema Fernandez, Carlotta Nardelli, Valentina Pierini, Barbara Crescenzi, Fabrizia Pellanera, Caterina Matteucci, Maria Crocioni, Silvia Arniani, Valeria Di Battista, Martina Quintini, Giada Mondanelli, Ciriana Orabona, Paolo Gorello, Cristina Mecucci
{"title":"Epigenetic Modeling of Jumping Translocations of 1q Heterochromatin in Acute Myeloid Leukemia After 5'-Azacytidine Treatment.","authors":"Anair Graciela Lema Fernandez, Carlotta Nardelli, Valentina Pierini, Barbara Crescenzi, Fabrizia Pellanera, Caterina Matteucci, Maria Crocioni, Silvia Arniani, Valeria Di Battista, Martina Quintini, Giada Mondanelli, Ciriana Orabona, Paolo Gorello, Cristina Mecucci","doi":"10.1002/gcc.70013","DOIUrl":"https://doi.org/10.1002/gcc.70013","url":null,"abstract":"<p><p>Jumping translocations (JT) are rare cytogenetic abnormalities associated with progression in myelodysplastic syndromes (MDS) and acute myeloid leukemia (AML). Typically, a tri-tetra-somic 1q chromosome is translocated to two or more recipient chromosomes. In multiple myeloma JT were shown to originate after DNA demethylation and decondensation. Using epigenomics, we investigated sequential samples in an SRSF2-mutated MDS and AML cohort with normal karyotype at diagnosis and 1qJT at disease evolution after 5'-azacytidine (AZA). 1qJT breakpoints fell within repetitive DNA at both 1q12 and the translocation partners, namely acrocentrics n. 14, 15, 21, and 22, chromosome 16, and chromosome Y. The global methylome at diagnosis showed hypermethylation at 61% of the differentially methylated regions (DMRs), followed by hypomethylation at 80% of DMRs under AZA, mostly affecting pathways related to immune system, chromatin organization, chromosome condensation, telomere maintenance, rRNA, and DNA repair. At disease evolution, a shift toward hypermethylation, intronic enhancers enrichment and epigenetic involvement of the PI3K/AKT and MAPK signaling emerged. In particular, AKT1 phosphorylation behaved as a hallmark of the progression. Overall, we provided new insights on the characterization of 1qJT in SRSF2-mutated myeloid neoplasms and first showed that epigenetics is a powerful tool to investigate the molecular landscape of repetitive DNA rearrangements.</p>","PeriodicalId":12700,"journal":{"name":"Genes, Chromosomes & Cancer","volume":"63 11","pages":"e70013"},"PeriodicalIF":3.1,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142739271","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Malignant Bone-Forming Neoplasm With NIPBL::BEND2 Fusion. 伴有 NIPBL::BEND2 融合的恶性骨形成肿瘤
IF 3.1 2区 医学
Genes, Chromosomes & Cancer Pub Date : 2024-11-01 DOI: 10.1002/gcc.70015
Nooshin K Dashti, George Matcuk, Abbas Agaimy, Carla Saoud, Cristina R Antonescu
{"title":"Malignant Bone-Forming Neoplasm With NIPBL::BEND2 Fusion.","authors":"Nooshin K Dashti, George Matcuk, Abbas Agaimy, Carla Saoud, Cristina R Antonescu","doi":"10.1002/gcc.70015","DOIUrl":"https://doi.org/10.1002/gcc.70015","url":null,"abstract":"<p><p>Conventional high-grade osteosarcomas are characterized by aggressive radiologic features, cytologic pleomorphism, and complex genomics. However, rare examples of osteosarcomas remain challenging due to unusual histology, such as sclerosing or osteoblastoma-like features, which may require molecular confirmation of their complex genetic alterations. We have encountered such a case in a 17-year-old man, who presented with a third metatarsal sclerotic bone lesion, found incidentally in the work-up of a foot trauma. The initial imaging revealed a lesion with sclerotic/blastic features proximally and lucent/lytic portion distally, findings interpreted consistent with osteoblastoma. The lesion was managed intra-lesionally with curettings and cryoablation; however, the microscopic findings were non-specific, showing a bland osteoblastic proliferation embedded in a densely sclerotic matrix. Subsequently, the patient developed two rapid recurrences; the first recurrence was treated similarly despite its associated soft tissue extension radiographically, and the histologic findings remained non-specific. The 2nd recurrence showed a large mass, with bone destruction and soft tissue extension and an open biopsy revealed features of osteosarcoma with lace-like osteoid deposition, albeit with uniform cytomorphology. The subsequent below knee amputation showed features compatible with high-grade osteosarcoma, including solid growth of uniform epithelioid cells, with vesicular nuclei and scant cytoplasm, set in a lace-like meshwork of osteoid matrix. There was significant mitotic activity and tumor necrosis. Tumor cells were positive for SATB2. Further molecular work-up was performed showing an unexpected NIPBL::BEND2 fusion, which has been previously reported in two cases of phosphaturic mesenchymal tumor (PMT). FGF23 (ISH) was performed and was negative. By DNA methylation profiling, unsupervised clustering and UMAP dimensionality reduction revealed grouping with high-grade osteosarcomas and not with the PMT group. The patient received chemotherapy post-amputation and is alive without evidence of disease, with 10-month follow-up. We report an aggressive, overtly malignant acral bone-forming tumor, harboring a NIPBL::BEND2 fusion. Further studies are needed to evaluate the recurrent potential of this fusion in osteosarcomas and its relationship with PMT.</p>","PeriodicalId":12700,"journal":{"name":"Genes, Chromosomes & Cancer","volume":"63 11","pages":"e70015"},"PeriodicalIF":3.1,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142739273","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Microsatellite Instability and Loss of Heterozygosity as Prognostic Markers in Oral Squamous Cell Carcinoma: Molecular Mechanisms, Detection Techniques, and Therapeutic Strategies 作为口腔鳞状细胞癌预后标志物的微卫星不稳定性和异质性丢失:分子机制、检测技术和治疗策略。
IF 3.1 2区 医学
Genes, Chromosomes & Cancer Pub Date : 2024-10-29 DOI: 10.1002/gcc.70002
Leyla Arslan Bozdag, Sevinç Inan, Sibel Elif Gultekin
{"title":"Microsatellite Instability and Loss of Heterozygosity as Prognostic Markers in Oral Squamous Cell Carcinoma: Molecular Mechanisms, Detection Techniques, and Therapeutic Strategies","authors":"Leyla Arslan Bozdag,&nbsp;Sevinç Inan,&nbsp;Sibel Elif Gultekin","doi":"10.1002/gcc.70002","DOIUrl":"10.1002/gcc.70002","url":null,"abstract":"<p>The aim of this study was to conduct a systematic review of research investigating the potential role of microsatellite instability (MSI) and loss of heterozygosity (LOH) in oral squamous cell carcinoma (OSCC), with a focus on molecular mechanisms, detection methods, and therapeutic approaches. Search for articles involved the PubMed and Scopus. Previous retrospective and prospective studies identified variations between oral cancers that exhibit microsatellite stability and LOH. In this search, 294 articles were initially retrieved. Of these, 70 were excluded due to duplication, 106 were identified as ineligible by automated tools, and 24 were excluded as they were published in languages other than English. An additional 94 articles were excluded, 32 of which focused on head and neck cancers broadly, and 8 could not be accessed due to withdrawal. Ultimately, a systematic review was conducted based on 54 selected articles. Among the chromosomes analyzed for MSI and LOH, the highest frequency of LOH was observed on chromosome 9p. The MSI subtype is particularly susceptible to immunotherapeutic methods, such as the use of anti-PD-L1 and anti-CTLA4 antibodies, owing to its strong immunogenicity and ubiquitous expression of immune checkpoint ligands. Given the distinct characteristics and clinical behavior of oral cancer with MSI compared to microsatellite stable disease, it is advisable to incorporate MSI testing into the diagnostic process for all stages of tumor development. This ensured that each patient had received precise and effective treatment.</p>","PeriodicalId":12700,"journal":{"name":"Genes, Chromosomes & Cancer","volume":"63 10","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/gcc.70002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142521727","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Aggressive Spindle Cell Sarcoma in Young Woman With the FGFR1::EBF2 Fusion 年轻女性患侵袭性纺锤形细胞肉瘤,与 FGFR1::EBF2 融合
IF 3.1 2区 医学
Genes, Chromosomes & Cancer Pub Date : 2024-10-18 DOI: 10.1002/gcc.70000
Harumi Nakamura, Yoji Kukita, Ken-ichi Yoshida, Hironari Tamiya, Shigeki Kadonaga, Satoshi Takenaka, Toshinari Yagi
{"title":"Aggressive Spindle Cell Sarcoma in Young Woman With the FGFR1::EBF2 Fusion","authors":"Harumi Nakamura,&nbsp;Yoji Kukita,&nbsp;Ken-ichi Yoshida,&nbsp;Hironari Tamiya,&nbsp;Shigeki Kadonaga,&nbsp;Satoshi Takenaka,&nbsp;Toshinari Yagi","doi":"10.1002/gcc.70000","DOIUrl":"https://doi.org/10.1002/gcc.70000","url":null,"abstract":"","PeriodicalId":12700,"journal":{"name":"Genes, Chromosomes & Cancer","volume":"63 10","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142449222","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cell Senescence and the Genetics of Melanoma Development 细胞衰老与黑色素瘤的遗传学发展
IF 3.1 2区 医学
Genes, Chromosomes & Cancer Pub Date : 2024-10-18 DOI: 10.1002/gcc.23273
Sophie M. Constantinou, Dorothy C. Bennett
{"title":"Cell Senescence and the Genetics of Melanoma Development","authors":"Sophie M. Constantinou,&nbsp;Dorothy C. Bennett","doi":"10.1002/gcc.23273","DOIUrl":"https://doi.org/10.1002/gcc.23273","url":null,"abstract":"<p>Cutaneous malignant melanoma is an aggressive skin cancer with an approximate lifetime risk of 1 in 38 in the UK. While exposure to ultraviolet radiation is a key environmental risk factor for melanoma, up to ~10% of patients report a family history of melanoma, and ~1% have a strong family history. The understanding of causal mutations in melanoma has been critical to the development of novel targeted therapies that have contributed to improved outcomes for late-stage patients. Here, we review current knowledge of the genes affected by familial melanoma mutations and their partial overlap with driver genes commonly mutated in sporadic melanoma development. One theme linking a set of susceptibility loci/genes is the regulation of skin pigmentation and suntanning. The largest functional set of susceptibility variants, typically with high penetrance, includes <i>CDKN2A</i>, <i>RB1</i>, and telomerase reverse transcriptase (<i>TERT</i>) mutations, associated with attenuation of cell senescence. We discuss the mechanisms of action of these gene sets in the biology and progression of nevi and melanoma.</p>","PeriodicalId":12700,"journal":{"name":"Genes, Chromosomes & Cancer","volume":"63 10","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/gcc.23273","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142449221","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sporadic NF1-Mutated Inflammatory Polyps of the Colon: A Case Report and Brief Literature Review 散发性 NF1 基因突变结肠炎症性息肉:病例报告和简要文献综述
IF 3.1 2区 医学
Genes, Chromosomes & Cancer Pub Date : 2024-10-18 DOI: 10.1002/gcc.70001
Azfar Neyaz, Ibrahim Abukhiran, Rana Naous
{"title":"Sporadic NF1-Mutated Inflammatory Polyps of the Colon: A Case Report and Brief Literature Review","authors":"Azfar Neyaz,&nbsp;Ibrahim Abukhiran,&nbsp;Rana Naous","doi":"10.1002/gcc.70001","DOIUrl":"https://doi.org/10.1002/gcc.70001","url":null,"abstract":"","PeriodicalId":12700,"journal":{"name":"Genes, Chromosomes & Cancer","volume":"63 10","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142451212","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Potential Use of Extracellular Vesicles for the HER2 Status Assessment in Breast Cancer Patients 细胞外小泡在乳腺癌患者 HER2 状态评估中的潜在用途
IF 3.1 2区 医学
Genes, Chromosomes & Cancer Pub Date : 2024-10-16 DOI: 10.1002/gcc.23264
Sol Moon, Seung Il Kim, Suji Lee, Hyojung Lee, Young Kim, Joon Ye Kim, Min Woo Kim, Jee Ye Kim
{"title":"Potential Use of Extracellular Vesicles for the HER2 Status Assessment in Breast Cancer Patients","authors":"Sol Moon,&nbsp;Seung Il Kim,&nbsp;Suji Lee,&nbsp;Hyojung Lee,&nbsp;Young Kim,&nbsp;Joon Ye Kim,&nbsp;Min Woo Kim,&nbsp;Jee Ye Kim","doi":"10.1002/gcc.23264","DOIUrl":"https://doi.org/10.1002/gcc.23264","url":null,"abstract":"<p>Human epithelial growth factor receptor 2 (HER2)-targeted therapies are effective in patients with HER2-positive breast cancer. Recent advances have shown that HER2-targeted therapies can also be of benefit when treating tumors expressing low levels of HER2, highlighting the importance of identifying the HER2-low subgroup. This clinical trend has opened new therapeutic avenues for patients who were previously ineligible for HER2-targeted therapies. Thus, the development of new diagnostic methods for real-time HER2 profiling is crucial for accurately tailoring the treatment for these patients. We hypothesized that tumor-derived extracellular vesicles (TEVs) could reflect the HER2 profiles of primary tumors and potentially serve as diagnostic tools for HER2 status. This approach was validated using six breast cancer cell lines, which confirmed that the TEVs accurately reflected the HER2 profiles of the tumor cells. TEVs were isolated using an immunoaffinity method, and copy number variation (CNV) in the <i>ERBB2/EIF2C</i> ratio was assessed using droplet digital PCR of DNA from these vesicles. Clinical validation using plasma samples from 33 breast cancer patients further reinforced the diagnostic potential of our method. Pearson's correlation coefficient analysis of the flow cytometry results demonstrated that TEVs reflected HER2 expression in primary cells. To distinguish between HER2-negative and HER2-low patients, the area under the curve (AUC) of the ROC curve in our method was 0.796, with a sensitivity of 53.8% and a specificity of 100%. These findings suggest the clinical utility of extracellular vesicles derived from plasma and emphasize the need for further research to distinguish HER2-negative from HER2-low patients.</p>","PeriodicalId":12700,"journal":{"name":"Genes, Chromosomes & Cancer","volume":"63 10","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/gcc.23264","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142443476","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular Profiling of Low-Grade Appendiceal Mucinous Neoplasms (LAMN) 低级别阑尾粘液性肿瘤(LAMN)的分子谱分析
IF 3.1 2区 医学
Genes, Chromosomes & Cancer Pub Date : 2024-10-14 DOI: 10.1002/gcc.23270
Julia Doll, Katja Maurus, Franziska Köhler, Niels Matthes, Johan F. Lock, Christoph-Thomas Germer, Andreas Rosenwald, Armin Wiegering
{"title":"Molecular Profiling of Low-Grade Appendiceal Mucinous Neoplasms (LAMN)","authors":"Julia Doll,&nbsp;Katja Maurus,&nbsp;Franziska Köhler,&nbsp;Niels Matthes,&nbsp;Johan F. Lock,&nbsp;Christoph-Thomas Germer,&nbsp;Andreas Rosenwald,&nbsp;Armin Wiegering","doi":"10.1002/gcc.23270","DOIUrl":"https://doi.org/10.1002/gcc.23270","url":null,"abstract":"<p>Low-grade appendiceal mucinous neoplasia (LAMN) represents a relatively rare tumor of the appendix typically diagnosed incidentally through appendectomy for acute appendicitis. In cases where perforation occurs, mucinous content may disseminate into the abdominal cavity, leading to the development of pseudomyxoma peritonei (PMP). The primary objective of this study was to elucidate the molecular characteristics associated with various stages of LAMN and PMP. DNA was extracted from LAMN, primary PMPs, recurrent PMPs, and adenocarcinomas originating from LAMN. The subsequent analysis involved the examination of mutational hotspot regions within 50 cancer-related genes, covering over 2800 COSMIC mutations, utilizing amplicon-based next-generation sequencing (NGS). Our findings revealed activating somatic mutations within the MAPK-signaling pathway across all tumors examined. Specifically, 98.1% of cases showed mutations in <i>KRAS</i>, while one tumor harbored a <i>BRAF</i> mutation. Additionally, <i>GNAS</i> mutations were identified in 55.8% of tumors, with no significant difference observed between LAMN and PMP. While LAMN rarely displayed additional mutations, 42% of primary PMPs and 60% of recurrent PMPs showed additional mutations. Notably, both adenocarcinomas originating from LAMN showed mutations within <i>TP53</i>. Furthermore, 7.7% (4/52) of cases exhibited a potentially targetable <i>KRAS</i> G12C mutation. In four patients, NGS analysis was performed on both primary PMP and recurrent PMP/adenocarcinoma samples. While mutations in <i>KRAS</i> and <i>GNAS</i> were detected in almost all samples, 50% of recurrent cases displayed an additional <i>SMAD4</i> mutation, suggesting a notable alteration during disease progression. Our findings indicate two key points: First, mutations within the MAPK pathway, particularly in <i>KRAS</i>, are evident across all tumors, along with a high frequency of <i>GNAS</i> mutations. Second, progression toward PMP or adenocarcinoma is associated with an accumulation of additional mutations within common oncogenic pathways.</p>","PeriodicalId":12700,"journal":{"name":"Genes, Chromosomes & Cancer","volume":"63 10","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/gcc.23270","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142435482","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Establishment and Characterization of a Novel Pleuropulmonary Blastoma Cell Line 新型胸膜肺母细胞瘤细胞系的建立与特征描述
IF 3.1 2区 医学
Genes, Chromosomes & Cancer Pub Date : 2024-10-14 DOI: 10.1002/gcc.23276
Keisuke Kato, Hiroaki Goto, Mio Tanaka, Tetsuomi Suzuki, Yasunori Toyoda, Masato Shinkai, Norihiko Kitagawa, Toshiji Nishi, Hisato Kigasawa, Kenji Kurosawa, Noriko Aida, Ai Yoshimi, Asami Noda, Yumi Ito, Masafumi Seki, Junko Takita, Noriyuki Nagahara, Masahiro Tsuchida, Yukichi Tanaka
{"title":"Establishment and Characterization of a Novel Pleuropulmonary Blastoma Cell Line","authors":"Keisuke Kato,&nbsp;Hiroaki Goto,&nbsp;Mio Tanaka,&nbsp;Tetsuomi Suzuki,&nbsp;Yasunori Toyoda,&nbsp;Masato Shinkai,&nbsp;Norihiko Kitagawa,&nbsp;Toshiji Nishi,&nbsp;Hisato Kigasawa,&nbsp;Kenji Kurosawa,&nbsp;Noriko Aida,&nbsp;Ai Yoshimi,&nbsp;Asami Noda,&nbsp;Yumi Ito,&nbsp;Masafumi Seki,&nbsp;Junko Takita,&nbsp;Noriyuki Nagahara,&nbsp;Masahiro Tsuchida,&nbsp;Yukichi Tanaka","doi":"10.1002/gcc.23276","DOIUrl":"https://doi.org/10.1002/gcc.23276","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Purpose</h3>\u0000 \u0000 <p>Pleuropulmonary blastoma (PPB) is an infrequently encountered childhood malignant intrathoracic neoplasm associated with unfavorable clinical behavior. Since a well-characterized preclinical model is essential for developing competent agents for PPB, we aim to establish and characterize the world's first cell line of PPB, and attempt to perform the cytotoxicity assay on the PPB cell line.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Experimental Design</h3>\u0000 \u0000 <p>The index case is a 2-year-old female who developed a right thoracic tumor that was surgically removed and treated with multi-agent chemotherapy. The patient is free from recurrence, although it was 9 years after the diagnosis when she developed a thyroid tumor. We performed in vitro cultivation of the isolated neoplastic cells from the tumor, cytogenetic findings and molecular analysis, and tetrazolium colorimetric assay.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Result</h3>\u0000 \u0000 <p>The histology was consistent with PPB. Serial passage of cultivation produced a continuously growing cell line, KCMC-PPB-1. Conventional cytogenetic analysis of the established cell line revealed complex numerical and structural chromosomal abnormalities, including add(17)(p11). Mutation analysis on the cultured cells revealed amino-acid substitution mutation on exon 4 of <i>TP53</i> (NM_001276760.3:c.212_213delTG; NP_001263689.1:p.Leu72ArgfsTer37) and compound heterozygous mutations of <i>DICER1</i> (NM_177438.3:c. 4910C&gt;A; NP_803187.1:Ser1637* and NM_177438.3:c. 5114A&gt;T; NP_803187.1:Glu1705Val). The cultivated cells demonstrated vulnerability to bortezomib on cytotoxicity assay.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Conclusion</h3>\u0000 \u0000 <p>Our KCMC-PPB-1 is the first genuine, molecularly characterized PPB cell line. The cell line is transplantable to nu/nu mice; therefore, it is suitable for a preclinical model for new drug development. The cytotoxicity assay demonstrated that bortezomib is active in the current PPB model.</p>\u0000 </section>\u0000 </div>","PeriodicalId":12700,"journal":{"name":"Genes, Chromosomes & Cancer","volume":"63 10","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142435481","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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