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Genome-wide analysis of the MADS-box gene family in mango and ectopic expression of MiMADS77 in Arabidopsis results in early flowering 芒果中 MADS-box 基因家族的全基因组分析以及拟南芥中 MiMADS77 的异位表达导致提早开花。
IF 2.6 3区 生物学
Gene Pub Date : 2024-10-28 DOI: 10.1016/j.gene.2024.149054
Haixia Yu , Liming Xia , Jiawei Zhu , Xiaojie Xie , Ying Wei , Xi Li , Xinhua He , Cong Luo
{"title":"Genome-wide analysis of the MADS-box gene family in mango and ectopic expression of MiMADS77 in Arabidopsis results in early flowering","authors":"Haixia Yu ,&nbsp;Liming Xia ,&nbsp;Jiawei Zhu ,&nbsp;Xiaojie Xie ,&nbsp;Ying Wei ,&nbsp;Xi Li ,&nbsp;Xinhua He ,&nbsp;Cong Luo","doi":"10.1016/j.gene.2024.149054","DOIUrl":"10.1016/j.gene.2024.149054","url":null,"abstract":"<div><div>Mango (<em>Mangifera indica</em> L.) is an important tropical fruit, and timely flowering and fruit setting are very important for mango production. The <em>MADS-box</em> gene family is involved in the regulation of flower induction, floral organ specification, and fruit development in plants. The identification and analysis of the <em>MADS-box</em> gene family can lay a foundation for the study of the molecular mechanism of flowering and fruit development in mango. In this study, 119 <em>MiMADS-box</em> genes were identified on the basis of genome and transcriptome data. Phylogenetic analysis revealed that these genes can be divided into two classes. Forty-one type I proteins were further divided into three subfamilies, and seventy-eight type II proteins were further classified into eleven subfamilies. Several pairs of alternative splicing genes were found, especially in the <em>SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1</em> (<em>SOC1</em>) subfamily. The <em>MiMADS-box</em> genes were distributed on 18 out of the 20 mango chromosomes. Cis-element analysis revealed many light-, stress-, and hormone-responsive elements in the promoter regions of the mango <em>MiMADS-box</em> genes. Expression pattern analysis revealed that these genes were differentially expressed in multiple tissues in mango. The highly expressed <em>MiMADS77</em> was subsequently transformed into Arabidopsis, resulting in significant early flowering and abnormal floral organs. Yeast two-hybrid (Y2H) assays revealed that MiMADS77 interacts with several MiMADS-box proteins. In addition, we constructed a preliminary flowering regulatory network of <em>MADS-box</em> genes in mango on the basis of related studies. These results suggest that <em>MiMADS77</em> genes may be involved in flowering regulation of mango.</div></div>","PeriodicalId":12499,"journal":{"name":"Gene","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142568086","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Apigenin inhibits epithelial mesenchymal transition in renal tubular epithelial cells through PI3K/AKT and NF-κB pathways for treating renal fibrosis 芹菜素通过 PI3K/AKT 和 NF-κB 通路抑制肾小管上皮细胞的上皮间充质转化以治疗肾脏纤维化
IF 2.6 3区 生物学
Gene Pub Date : 2024-10-28 DOI: 10.1016/j.gene.2024.149056
Tao Sun , Baoying Wang , Zhan Wang , Lei Chen , Zhenzhen Li , Ningning Li
{"title":"Apigenin inhibits epithelial mesenchymal transition in renal tubular epithelial cells through PI3K/AKT and NF-κB pathways for treating renal fibrosis","authors":"Tao Sun ,&nbsp;Baoying Wang ,&nbsp;Zhan Wang ,&nbsp;Lei Chen ,&nbsp;Zhenzhen Li ,&nbsp;Ningning Li","doi":"10.1016/j.gene.2024.149056","DOIUrl":"10.1016/j.gene.2024.149056","url":null,"abstract":"<div><div>Renal fibrosis is a crucial factor in the progression of chronic kidney diseases. Previous studies have suggested that apigenin (API) has potential in ameliorating renal fibrosis, but its therapeutic mechanism remains unclear. This study aims to elucidate the mechanisms by which API treats renal fibrosis using network pharmacology and experimental validation. Initially, we used the Traditional Chinese Medicine Systems Pharmacology (TCMSP) Database and GeneCards database to identify molecular targets of API and associated genes. Next, we constructed a network of API-renal fibrosis targets, followed by protein–protein interaction (PPI) analysis. Subsequent analyses, such as Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment, were performed using the Database for Annotation, Visualization, and Integrated Discovery (DAVID). We also performed molecular docking studies to explore API’s interactions with key proteins. To validate API’s mechanism in treating renal fibrosis, we used a Human Kidney-2 (HK-2) cell model of epithelial-mesenchymal transition (EMT) induced by transforming growth factor-β1 (TGF-β1). We identified 77 API target genes, 8434 renal fibrosis target genes, and 64 intersection genes, which were primarily enriched in nuclear factor kappa-B (NF-κB) and Phosphatidylinositide 3-kinases/protein kinase B (PI3K-AKT) pathways. API significantly inhibited EMT in TGF-β1-induced HK-2 cells by regulating the expression of α-Smooth muscle actin (α-SMA) and E-cadherin and suppressing the protein expression of p-PI3K, p-AKT, and p-P65, which are related to the PI3K-AKT and NF-κB pathways. However, co-administration of the PI3K agonist 740Y-P counteracted API’s inhibitory effects on these protein expressions. In summary, these findings highlight API’s therapeutic potential in treating renal fibrosis by modulating EMT in renal tubular epithelial cells via the PI3K-AKT and NF-κB pathways.</div></div>","PeriodicalId":12499,"journal":{"name":"Gene","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142553420","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrated miRNA sequencing and experimental validation Unveil that low-level laser enhances vascular endothelial cell proliferation, migration, and lumen formation via miR-90/VEGFA 综合 miRNA 测序和实验验证揭示了低强度激光可通过 miR-90/VEGFA 增强血管内皮细胞的增殖、迁移和管腔形成。
IF 2.6 3区 生物学
Gene Pub Date : 2024-10-28 DOI: 10.1016/j.gene.2024.149049
Lili Wu , Boyuan Zhang , Yue Li , Chao Xiong , Jinhai Yu , Jiancheng Gan , Qihua Xu , Yaohua Wang , Hongfei Liao
{"title":"Integrated miRNA sequencing and experimental validation Unveil that low-level laser enhances vascular endothelial cell proliferation, migration, and lumen formation via miR-90/VEGFA","authors":"Lili Wu ,&nbsp;Boyuan Zhang ,&nbsp;Yue Li ,&nbsp;Chao Xiong ,&nbsp;Jinhai Yu ,&nbsp;Jiancheng Gan ,&nbsp;Qihua Xu ,&nbsp;Yaohua Wang ,&nbsp;Hongfei Liao","doi":"10.1016/j.gene.2024.149049","DOIUrl":"10.1016/j.gene.2024.149049","url":null,"abstract":"<div><div>The hydroxyapatite orbital implantation is widely used to treat orbital malformation, but delayed postoperative angiogenesis can hinder conjunctival wound healing, potentially leading to implant exposure and prolapse. Low-intensity laser therapy (LLLT) is recognized for its ability to promote tissue regeneration, reduce inflammation, and alleviate pain. This study aims to explore the specific mechanism of miRNAs-VEGFA pathway regulation in early vascularization after orbital implant placement induced by LLLT. A hydroxyapatite orbital implant model was established and treated with LLLT. Vascular tissues surrounding the ocular prosthesis were extracted for high-throughput sequencing to identify differentially expressed miRNAs. miRNAs predicted to bind with VEGFA were selected for validation. GO and KEGG analyses were performed to reveal the functional enrichment of target genes regulated by these miRNAs. Dual luciferase assay, qRT-PCR, and Western blotting were used to verify the targeting relationship between miR-90 and VEGFA. The effects of miR-90 on rabbit microvascular endothelial cell function were assessed through CCK-8 assay, scratch test, and tube formation assay. High-throughput sequencing revealed 32 differentially expressed miRNAs, with 8 upregulated and 24 downregulated. miR-90 was predicted to have a high binding score and expression abundance with VEGFA and was confirmed to regulate VEGFA expression. In vitro functional tests showed that miR-90 inhibited rabbit microvascular endothelial cell proliferation, migration, and tube formation. This study is the first to demonstrate that LLLT regulates ocular prosthesis angiogenesis via the miR-90/VEGFA pathway, providing a new target for treating vascular-dependent diseases.</div></div>","PeriodicalId":12499,"journal":{"name":"Gene","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142568089","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effect of epigenetic changes in hypoxia induced factor (HIF) gene across cancer types 不同癌症类型中低氧诱导因子 (HIF) 基因表观遗传变化的影响
IF 2.6 3区 生物学
Gene Pub Date : 2024-10-26 DOI: 10.1016/j.gene.2024.149047
Aditi P. Agarwal, Maushmi S. Kumar
{"title":"Effect of epigenetic changes in hypoxia induced factor (HIF) gene across cancer types","authors":"Aditi P. Agarwal,&nbsp;Maushmi S. Kumar","doi":"10.1016/j.gene.2024.149047","DOIUrl":"10.1016/j.gene.2024.149047","url":null,"abstract":"<div><div>Cancer hypoxia, a crucial characteristic of malignancy, ranging from practically non-hypoxic to severe, impacts gene expression, metabolism and mechanisms associated with tumor formation serves as a key obstacle in cancer therapy. It triggers a complex network of cell signaling pathways, such as the NF-κB, PI3K, mTOR/AKT,<!--> <!-->MAPK, HIF and their associated genes regulating the effects of the same. The onset and advancement of cancer are attributed to genetic and epigenetic modifications which are intrinsically related. Off late, it has been observed that in disease progression, the epigenetic modifications lead to gene mutations that in turn alter the epigenome, presenting a major hurdle in fabricating treatment strategies. However, the<!--> <!-->progress in science and technology has led to the emergence of various surfacing omics and multi-view clustering algorithms, which offer unparalleled prospects for further subtyping cancers, enhancing the prognosis and treatment results of these subtypes, and comprehending crucial pathophysiological mechanisms across diverse molecular strata. Multi-omics has allowed scientists to gain a more comprehensive understanding of the various ways that cellular malfunction can lead to cancer. So, it becomes of utmost importance to firstly understand the epigenetic changes taking place in tumor hypoxia at gene level. This review sheds light on the role of HIF gene in hypoxic milieu and its relationship with mechanisms of cancer epigenetics. It further glances as to how omics approach can be used to study the oncogenic cellular changes and how bioinformatic tools aid in identification of complex gene networks involved in disease progression. Lastly, it glimpses through the benefits and shortcomings of the existing epi drug therapy and how it can be used in developing novel treatment options.</div></div>","PeriodicalId":12499,"journal":{"name":"Gene","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142553419","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
BZW2 is a potential regulator of non-small cell lung cancer progression. BZW2 是非小细胞肺癌进展的潜在调控因子。
IF 2.6 3区 生物学
Gene Pub Date : 2024-10-26 DOI: 10.1016/j.gene.2024.149055
Yan Mo, Xueyong Feng, Jincheng Su, Guoyong Chen, Lei Xian
{"title":"BZW2 is a potential regulator of non-small cell lung cancer progression.","authors":"Yan Mo, Xueyong Feng, Jincheng Su, Guoyong Chen, Lei Xian","doi":"10.1016/j.gene.2024.149055","DOIUrl":"https://doi.org/10.1016/j.gene.2024.149055","url":null,"abstract":"<p><strong>Background: </strong>Personalized targeted therapy has become an important strategy for cancer treatment owing to its remarkable therapeutic efficacy and safety. However, drug resistance remains the primary cause of treatment failure. Basic leucine zipper and W2 domain 2 (BZW2), which is aberrantly expressed in cancer, has been implicated in tumor progression and may serve as a new therapeutic target. Therefore, the role of BZW2 in non-small cell lung cancer (NSCLC) requires further investigation.</p><p><strong>Methods: </strong>The expression and genetic alterations of BZW2 in pan-cancers were explored using The Cancer Genome Atlas (TCGA) PanCancer databases. The mRNA and protein levels of BZW2 in patients with NSCLC were verified in our cohort. Functional experiments including CCK8, colony formation, and transwell assays were performed to evaluate the impact of BZW2 on the proliferative, migratory, and invasive capacities of SK-MES-1 cells. Gene Set Enrichment Analysis was used to identify underlying biological processes and pathways. Single-cell RNA (scRNA) sequencing data were employed to investigate the tumor microenvironment of NSCLC and the co-expression of BZW2 and stemness-related genes.</p><p><strong>Results: </strong>Dysregulated BZW2 expression was observed in various malignant tumors. BZW2 expression was found to be significantly elevated in NSCLC. BZW2 depletion inhibited the growth, mobility, and invasive abilities of lung squamous cell carcinoma SK-MES-1 cells. BZW2 may be related to signaling pathways such as nucleotide excision repair, ubiquitin-mediated proteolysis, and the P53 signaling pathway. Biological processes, including translational initiation, tRNA processing, and RNA methylation, were observed to be enriched in the high-BZW2 group. Furthermore, there was a positive correlation between BZW2 and the m6A- and m5C-related genes. scRNA analysis revealed a co-expression relationship between BZW2 and stemness-related genes such as CD44, SOX9, and CD133.</p><p><strong>Conclusions: </strong>Elevated BZW2 expression is associated with the proliferation, migration, and invasion of NSCLC, and BZW2 may be a potential therapeutic target for NSCLC.</p>","PeriodicalId":12499,"journal":{"name":"Gene","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142568060","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
C2C12 myoblasts differentiate into myofibroblasts via the TGF-β1 signaling pathway mediated by Fibulin2. C2C12 肌母细胞通过 Fibulin2 介导的 TGF-β1 信号通路分化成肌成纤维细胞。
IF 2.6 3区 生物学
Gene Pub Date : 2024-10-26 DOI: 10.1016/j.gene.2024.149048
Yongqiang Yang, Lei Li, Jun Fei, Zhong Li
{"title":"C2C12 myoblasts differentiate into myofibroblasts via the TGF-β1 signaling pathway mediated by Fibulin2.","authors":"Yongqiang Yang, Lei Li, Jun Fei, Zhong Li","doi":"10.1016/j.gene.2024.149048","DOIUrl":"https://doi.org/10.1016/j.gene.2024.149048","url":null,"abstract":"<p><p>Myoblast cells play a critical role in the regeneration of skeletal muscle following injury. It has been reported that local elevation of transforming growth factor-β1(TGF-β1) after skeletal muscle injury induces differentiation of myoblast cells into myofibroblasts.However, the mechanisms underlying this differentiation process remain incompletely understood. In this study, we found that Fibulin2 expression significantly increases in myoblast cells in response to TGF-β1 stimulation.Elevated Fibulin2 levels enhance the expression of fibrotic markers, mediated through phosphorylation of Smad2.Conversely, downregulation of Fibulin2 in myoblast cells inhibits the upregulation of fibrotic markers induced by TGF-β1 stimulation.Extracellular secretion of Fibulin2 activates the TGF-β1-Smad2 pathway, thereby promoting the upregulation of fibrotic markers.Hence, Fibulin2 and TGF-β1 form a positive feedback loop that facilitates differentiation of myoblast cells into myofibroblasts.</p>","PeriodicalId":12499,"journal":{"name":"Gene","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142568063","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Epigenetics of concussion: A systematic review 脑震荡的表观遗传学:系统回顾
IF 2.6 3区 生物学
Gene Pub Date : 2024-10-26 DOI: 10.1016/j.gene.2024.149046
Mark R. Antrobus , Terun Desai , David Young , Lee Machado , William J. Ribbans , Louis Y. El Khoury , Jon Brazier
{"title":"Epigenetics of concussion: A systematic review","authors":"Mark R. Antrobus ,&nbsp;Terun Desai ,&nbsp;David Young ,&nbsp;Lee Machado ,&nbsp;William J. Ribbans ,&nbsp;Louis Y. El Khoury ,&nbsp;Jon Brazier","doi":"10.1016/j.gene.2024.149046","DOIUrl":"10.1016/j.gene.2024.149046","url":null,"abstract":"<div><h3>Background</h3><div>Concussion is the most common neurological disorder affecting millions of people globally each year. Identifying epigenetic mechanisms influencing concussion incidence, severity and recovery could provide diagnostic and prognostic insight into this injury.</div></div><div><h3>Objectives</h3><div>This systematic review aims to identify the epigenetic mechanisms underpinning concussion.</div></div><div><h3>Methods</h3><div>Seven electronic databases; PubMed, MEDLINE, CINAHL, Cochrane library, SPORTDiscus, Scopus and Web of Science were searched for studies that investigated the epigenetic mechanisms of concussion and its underlying neuropathology.</div></div><div><h3>Results</h3><div>Based on inclusion and exclusion criteria, 772 titles were independently analysed by two of the authors to a final list of 28 studies that totaled 3042 participants. We observed separate associations between sncRNAs, methylation, histone modification and concussion. Overall, 204 small non-coding RNAs were significantly dysregulated between concussed participants and controls or between concussion participants with no post-concussive symptoms and those with post-concussive symptoms. From these, 37 were reported in more than one study and 23 of these were expressed in a consistent direction with at least one further study. Ingenuity pathway analysis identified 10 miRNAs known to regulate 15 genes associated with human neurological pathologies. Two studies found significant changes in global methylation in concussed participants and one study found a decrease in H3K27Me3 in the context of DNA damage and concussion.</div></div><div><h3>Conclusions</h3><div>The review findings suggest that epigenetic mechanisms may play an important role in the pathophysiological mechanisms that could influence outcome, recovery, and potential long-term consequences of concussion for individuals.</div></div>","PeriodicalId":12499,"journal":{"name":"Gene","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142552250","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Analysis of rosmarinic acid synthase (RAS) gene family and functional study of SmRAS1/2/4 in Salvia miltiorrhiza 丹参中的迷迭香酸合成酶(RAS)基因家族分析和 SmRAS1/2/4 的功能研究
IF 2.6 3区 生物学
Gene Pub Date : 2024-10-26 DOI: 10.1016/j.gene.2024.149057
Yujie Xin , Hongbin Zhan , Heng Kang , Qianmo Li , Fan Fu , Limin Han , Wenping Hua , Xiaoyan Cao
{"title":"Analysis of rosmarinic acid synthase (RAS) gene family and functional study of SmRAS1/2/4 in Salvia miltiorrhiza","authors":"Yujie Xin ,&nbsp;Hongbin Zhan ,&nbsp;Heng Kang ,&nbsp;Qianmo Li ,&nbsp;Fan Fu ,&nbsp;Limin Han ,&nbsp;Wenping Hua ,&nbsp;Xiaoyan Cao","doi":"10.1016/j.gene.2024.149057","DOIUrl":"10.1016/j.gene.2024.149057","url":null,"abstract":"<div><div>Rosmarinic acid synthase is an essential enzyme involved in the biosynthesis of rosmarinic acid (RA), which facilitates the coupling of phenylpropanoid and tyrosine-derived pathway products. Our study identified six <em>SmRAS</em> genes in <em>Salvia miltiorrhiza,</em> with <em>SmRAS1</em> being the only one functionally characterized to date. Real-time quantitative PCR was employed to analyze the expression profiles of the <em>SmRAS</em> gene family, revealing that <em>SmRAS1/2/4</em> are predominantly expressed in the roots, which are the medicinal components of <em>S. miltiorrhiza</em>. <em>SmRAS2</em> and <em>SmRAS4</em> exhibited significant responses to abscisic acid (ABA), gibberellin (GA<sub>3</sub>), and methyl jasmonate (MeJA) stimuli, while <em>SmRAS1</em> had notable responses to GA<sub>3</sub> and MeJA. β-glucuronidase (GUS) staining in transgenic <em>Arabidopsis thaliana</em> confirmed a spatiotemporal expression pattern of <em>SmRAS1/2/4</em> that was consistent with the qRT-PCR results. <em>Sm</em>RAS1/2/4 are primarily localized to the cytoplasm and plasma membrane. Our findings suggested that the overexpressions of <em>SmRAS1</em> or <em>SmRAS4</em> led to increased levels of salvianolic acid B (SalB) and RA, with a concomitant decrease in the Danshensu (DSS) content, which served as a substrate. In contrast, RNA interference lines exhibited a downward trend in the content of these substances. Interestingly, no significant changes were detected in the SalB, RA, or DSS contents due to the overexpression of <em>SmRAS2</em> or RNA interference lines. Collectively, our study demonstrated that <em>SmRAS1</em> and <em>SmRAS4</em> are key regulators of RA and SalB biosynthesis in <em>S. miltiorrhiza</em>, while <em>SmRAS2'</em>s role appears less impactful, suggesting a complex regulatory network that influences the medicinal properties of this plant.</div></div>","PeriodicalId":12499,"journal":{"name":"Gene","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142526244","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Revolutionizing animal husbandry: Breakthroughs in gene editing delivery systems. 畜牧业的革命:基因编辑传输系统的突破。
IF 2.6 3区 生物学
Gene Pub Date : 2024-10-25 DOI: 10.1016/j.gene.2024.149044
Yuan Liu, Xue Bai, Xue Feng, Shuang Liu, Yamei Hu, Hongen Chu, Lingkai Zhang, Bei Cai, Yun Ma
{"title":"Revolutionizing animal husbandry: Breakthroughs in gene editing delivery systems.","authors":"Yuan Liu, Xue Bai, Xue Feng, Shuang Liu, Yamei Hu, Hongen Chu, Lingkai Zhang, Bei Cai, Yun Ma","doi":"10.1016/j.gene.2024.149044","DOIUrl":"https://doi.org/10.1016/j.gene.2024.149044","url":null,"abstract":"<p><p>Gene editing technology has become an essential tool for advancing breeding practices, enhancing disease resistance, and boosting productivity in animal husbandry. Despite its potential, the delivery of gene editing reagents into cells faces several challenges, including low targeting efficiency, immunogenicity, and cytotoxicity, which have hindered its wider application in the field. This review discusses the evolution of gene editing technologies and highlights recent advancements in various delivery methods used in animal husbandry. It critically evaluates the strengths and weaknesses of these different delivery approaches while identifying potential directions for future development. The goal is to equip researchers with effective strategies to optimize delivery methods, ultimately facilitating the implementation and progress of gene editing technologies in animal husbandry.</p>","PeriodicalId":12499,"journal":{"name":"Gene","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142568132","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Advances in bacterial artificial chromosome (BAC) transgenic mice for gene analysis and disease research 用于基因分析和疾病研究的细菌人工染色体(BAC)转基因小鼠的研究进展。
IF 2.6 3区 生物学
Gene Pub Date : 2024-10-24 DOI: 10.1016/j.gene.2024.149014
Kazumasa Mogi , Hiroyuki Tomita , Masato Yoshihara , Hiroaki Kajiyama , Akira Hara
{"title":"Advances in bacterial artificial chromosome (BAC) transgenic mice for gene analysis and disease research","authors":"Kazumasa Mogi ,&nbsp;Hiroyuki Tomita ,&nbsp;Masato Yoshihara ,&nbsp;Hiroaki Kajiyama ,&nbsp;Akira Hara","doi":"10.1016/j.gene.2024.149014","DOIUrl":"10.1016/j.gene.2024.149014","url":null,"abstract":"<div><div>Transgenic mice, including those created using Bacterial Artificial Chromosomes (BACs), are artificial manipulations that have become critical tools for studying gene function. While conventional transgenic techniques face challenges in achieving precise expression of foreign genes in specific cells and tissues, BAC transgenic mice offer a solution by incorporating large DNA segments that can include entire expression units with tissue-specific enhancers.</div><div>This review provides a thorough examination of BAC transgenic mouse technology, encompassing both traditional and humanized models. We explore the benefits and drawbacks of BAC transgenesis compared to other techniques such as knock-in and CRISPR/Cas9 technologies. The review emphasizes the applications of BAC transgenic mice in various disciplines, including neuroscience, immunology, drug metabolism, and disease modeling. Additionally, we address crucial aspects of generating and analyzing BAC transgenic mice, such as position effects, copy number variations, and strategies to mitigate these challenges. Despite certain limitations, humanized BAC transgenic mice have proven to be invaluable tools for studying the pathogenesis of human diseases, drug development, and understanding intricate gene regulatory mechanisms. This review discusses current topics on BAC transgenic mice and their evolving significance in biomedical research.</div></div>","PeriodicalId":12499,"journal":{"name":"Gene","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142498269","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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