European Journal of Human Genetics最新文献

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Deep intronic NIPBL variants underlie unresolved Cornelia de Lange syndrome revealed by integrated epigenomic and transcriptomic analysis. 综合表观基因组学和转录组学分析显示,深内含子NIPBL变异是未解决的科妮莉亚·德·兰格综合征的基础。
IF 4.6 2区 生物学
European Journal of Human Genetics Pub Date : 2026-10-19 DOI: 10.1038/s41431-026-02259-8
Sophie Rondeau, Céline Huber, Jennifer Kerkhof, Bekim Sadikovic, Valérie Cormier-Daire
{"title":"Deep intronic NIPBL variants underlie unresolved Cornelia de Lange syndrome revealed by integrated epigenomic and transcriptomic analysis.","authors":"Sophie Rondeau, Céline Huber, Jennifer Kerkhof, Bekim Sadikovic, Valérie Cormier-Daire","doi":"10.1038/s41431-026-02259-8","DOIUrl":"https://doi.org/10.1038/s41431-026-02259-8","url":null,"abstract":"<p><p>Cornelia de Lange syndrome (CdLS) is a rare congenital disorder characterised by craniofacial features, growth retardation, limb anomalies, and intellectual disability. The condition arises from pathogenic variants in genes encoding cohesin complex components or regulators, most frequently NIPBL. Despite advances in genomic testing, approximately 30% of clinically diagnosed cases remain unresolved, suggesting the presence of non-coding variants. We investigated 10 classical CdLS patients negative for pathogenic variants in NIPBL, SMC1A, SMC3, RAD21, and HDAC8. Genome-wide methylation profiling was performed to identify CdLS-specific epigenetic signatures. Episignature-positive cases underwent trio-based deep sequencing of the entire NIPBL locus while targeted NIPBL RNA sequencing was used to assess splicing. Whole-genome sequencing (WGS) was performed in episignature-negative individuals. Five of ten patients exhibited a positive CdLS episignature in blood, saliva, or skin. Deep sequencing identified de novo deep intronic NIPBL variants in all cases, and two additional variants in episignature-negative patients. Seven distinct intronic variants were identified across introns 4, 10, 21, and 32. In silico tools predicted the creation or activation of cryptic splice sites in six variants. RNA sequencing confirmed pseudoexon inclusion in three patients, leading to premature termination codons and predicted nonsense-mediated decay. Tissue-specific variation in aberrant transcript expression was observed between blood and fibroblasts. We conclude that deep intronic NIPBL variants represent an under-recognised cause of CdLS, frequently escaping detection by conventional exome analysis. Integration of methylation episignatures, deep intronic sequencing, and RNA analysis enhances diagnostic yield and provides insight into the regulatory architecture of cohesinopathies.</p>","PeriodicalId":12016,"journal":{"name":"European Journal of Human Genetics","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2026-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149223588","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Uterine leiomyomas in HLRCC: a scoping review of presentation, histopathology, treatment patterns, and reproductive implications. 子宫平滑肌瘤在HLRCC:一个范围审查的表现,组织病理学,治疗模式,和生殖的影响。
IF 4.6 2区 生物学
European Journal of Human Genetics Pub Date : 2026-10-16 DOI: 10.1038/s41431-026-02255-y
Reda Hessi, Ethan Bendayan, Lorena Alexandra Mija, Lydia Ouchene, Megha Udupa, Raquel Lazarowitz, Lili Fu, Shuk On Annie Leung, Tania Cruz Marino, William D Foulkes, Elena Netchiporouk
{"title":"Uterine leiomyomas in HLRCC: a scoping review of presentation, histopathology, treatment patterns, and reproductive implications.","authors":"Reda Hessi, Ethan Bendayan, Lorena Alexandra Mija, Lydia Ouchene, Megha Udupa, Raquel Lazarowitz, Lili Fu, Shuk On Annie Leung, Tania Cruz Marino, William D Foulkes, Elena Netchiporouk","doi":"10.1038/s41431-026-02255-y","DOIUrl":"https://doi.org/10.1038/s41431-026-02255-y","url":null,"abstract":"<p><p>Hereditary leiomyomatosis and renal cell cancer (HLRCC) is a rare cancer predisposition syndrome in which uterine leiomyomas (ULs) are common, morbid, and often precede renal cancer diagnosis. We synthetized evidence on the clinical presentation, pathology, management, and reproductive outcomes of HLRCC-associated ULs. MEDLINE, Embase, Scopus, Web of Science Core Collection, and ClinicalTrials.gov were searched for peer-reviewed studies reporting original data on ULs in HLRCC. Two reviewers independently screened articles and extracted data. Individual patient data from 410 patients and aggregate data from 27 observational studies were included. Mean age at UL diagnosis was 32.4 years. Most patients (89.1%) had multiple fibroids, were symptomatic (88.1%), and commonly reported abnormal uterine bleeding (80.6%) or pelvic pain (41.2%). Average maximum fibroid size was 7.5 cm. Fumarate hydratase (FH) and/or S-(2-succino)cysteine (2SC) immunohistochemistry studies showed abnormal staining in >85% of tumors. Surgical intervention was required in 94.4% of patients; hysterectomy was most common (67.0%), at a mean age of 35.2 years, whereas myomectomy was performed in 27% at 27.7 years. Despite a family history of HLRCC-related features in 88.8% of patients, only 0.6% underwent germline FH testing before gynecologic diagnosis. Fertility and obstetric outcomes were sparsely reported. Uterine leiomyosarcoma was rare, with an uncertain syndromic association. HLRCC-associated ULs are genetically, morphologically, and clinically distinct from sporadic fibroids, yet remain under-recognized. Integrating age, multiplicity, symptoms, family history, and pathology-triggered FH/2SC immunohistochemistry into gynecologic practice would enable earlier germline testing, renal surveillance, and reproductive counseling. Prospective registries are needed to define genotype-phenotype relationships, fertility outcomes, and leiomyosarcoma risk.</p>","PeriodicalId":12016,"journal":{"name":"European Journal of Human Genetics","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2026-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149206639","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
RNA sequencing significantly improves HYDIN diagnosis and defines the effects of common deletions in primary ciliary dyskinesia. RNA测序显著提高了HYDIN的诊断,并明确了原发性纤毛运动障碍中常见缺失的影响。
IF 4.6 2区 生物学
European Journal of Human Genetics Pub Date : 2026-10-16 DOI: 10.1038/s41431-026-02243-2
Carolina Jaramillo Oquendo, Janice Coles, Lee Baker, David J Bunyan, N Simon Thomas, James Thompson, Gemma Fryatt, Sajida Khan, David Hunt, John W Holloway, Jane S Lucas, Diana Baralle, Woolf T Walker, Claire L Jackson
{"title":"RNA sequencing significantly improves HYDIN diagnosis and defines the effects of common deletions in primary ciliary dyskinesia.","authors":"Carolina Jaramillo Oquendo, Janice Coles, Lee Baker, David J Bunyan, N Simon Thomas, James Thompson, Gemma Fryatt, Sajida Khan, David Hunt, John W Holloway, Jane S Lucas, Diana Baralle, Woolf T Walker, Claire L Jackson","doi":"10.1038/s41431-026-02243-2","DOIUrl":"https://doi.org/10.1038/s41431-026-02243-2","url":null,"abstract":"<p><p>Primary Ciliary Dyskinesia (PCD) is a rare genetic disorder affecting ~1:7500 individuals characterised by recurrent chronic respiratory infections, bronchiectasis, laterality defects, and infertility. While at least 60 PCD-causing genes are reported, approximately 30% of patients remain without a confirmed molecular diagnosis. PCD caused by biallelic HYDIN variants is difficult to diagnose due to a 98% homologous pseudogene (HYDIN2). Additionally, functional ciliary diagnostic testing can be inconclusive due to the lack of discernible HYDIN ciliary ultrastructure defects by electron microscopy. Our aim was to diagnose genetically unresolved PCD patients with strong clinical suspicion of HYDIN defects using RNA sequencing (RNA-seq). RNA-seq was performed on total RNA extracted from patients' nasal epithelium cultured for 21 days at the air-liquid interface. Splicing abnormalities were detected using rMATS and genome-aligned reads were manually inspected using Integrative Genome Viewer. Thirteen individuals had strong clinical suspicion of PCD, normal TEM and inconclusive genetics: 11/13 had a single pathogenic or likely pathogenic variant in HYDIN, 1/13 had no variants, and 1/13 required clarification of variant origin (HYDIN vs HYDIN2). RNA-seq resolved 11/13 (85%) of cases. The same complex pathogenic aberrant splicing events were seen in seven unrelated patients. This abnormal splice pattern was caused by a large 10-kilobase deletion spanning intron 17 to intron 18. RNA-seq increases the diagnostic yield for patients with suspected PCD and has exposed a HYDIN 'hotspot' variant, increasing the observed prevalence of HYDIN-related cases within our genetically diagnosed cohort. Routine PCD genomics testing will now incorporate investigation of this genetic region of HYDIN.</p>","PeriodicalId":12016,"journal":{"name":"European Journal of Human Genetics","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2026-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149206645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Maternal perspectives on sharing newborn genomic data. 新生儿基因组数据共享的母亲视角。
IF 4.6 2区 生物学
European Journal of Human Genetics Pub Date : 2026-10-16 DOI: 10.1038/s41431-026-02258-9
Bernarda Prosenc, Mojca Cizek Sajko, Gorazd Kavsek, Marusa Herzog, Borut Peterlin
{"title":"Maternal perspectives on sharing newborn genomic data.","authors":"Bernarda Prosenc, Mojca Cizek Sajko, Gorazd Kavsek, Marusa Herzog, Borut Peterlin","doi":"10.1038/s41431-026-02258-9","DOIUrl":"https://doi.org/10.1038/s41431-026-02258-9","url":null,"abstract":"<p><p>Sharing clinical and genomic data is essential for accurate variant interpretation, the advancement of genomic research, and supporting couples planning to conceive. This cross-sectional study examined attitudes toward newborn genomic data sharing in a cohort of peripartum mothers in Slovenia. Among the 1111 respondents, 84% expressed willingness to share anonymized genomic data to benefit other couples and to advance novel diagnostic and preventive strategies. Support was reported by 87% for clinical applications and by 59% for research purposes, while 74% favored international data sharing. Conversely, pronounced hesitation emerged regarding disclosure of identifiable data for non-medical uses, particularly involving insurance providers (82%). Willingness to share genomic data was positively associated with higher educational attainment (p < 0.001), higher levels of genetic knowledge (p < 0.001), and prior experience with genetic testing (p = 0.013). These results emphasize the role of public understanding and trust in the ethical integration of genomic newborn screening initiatives.</p>","PeriodicalId":12016,"journal":{"name":"European Journal of Human Genetics","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2026-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149206680","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Optimized RNA-seq workflow for routine diagnosis of mitochondrial diseases using aberrant expression analysis and phenotype-driven prioritization. 利用异常表达分析和表型驱动优先级优化线粒体疾病常规诊断的RNA-seq工作流程。
IF 4.6 2区 生物学
European Journal of Human Genetics Pub Date : 2026-10-12 DOI: 10.1038/s41431-026-02256-x
Lucile Riera-Navarro, Eléonore Birgy, Samira Ait-El-Mkadem Saadi, Alexandre Janin, Annabelle Chaussenot, Sarra Bouri, Konstantina Fragaki, Bruno Francou, Patrick Edery, Elsa Kaphan, Gaetan Lesca, Fabienne Ory Magne, Pascal Cintas, Julien Maquet, Celia Hoebeke, Aline Cano, Alain Fouilhoux, Marion Aubert Mucca, Olivier Patat, Véronique Paquis-Flucklinger, Sylvie Bannwarth, Vincent Procaccio, Marco Lorenzi, Cécile Rouzier
{"title":"Optimized RNA-seq workflow for routine diagnosis of mitochondrial diseases using aberrant expression analysis and phenotype-driven prioritization.","authors":"Lucile Riera-Navarro, Eléonore Birgy, Samira Ait-El-Mkadem Saadi, Alexandre Janin, Annabelle Chaussenot, Sarra Bouri, Konstantina Fragaki, Bruno Francou, Patrick Edery, Elsa Kaphan, Gaetan Lesca, Fabienne Ory Magne, Pascal Cintas, Julien Maquet, Celia Hoebeke, Aline Cano, Alain Fouilhoux, Marion Aubert Mucca, Olivier Patat, Véronique Paquis-Flucklinger, Sylvie Bannwarth, Vincent Procaccio, Marco Lorenzi, Cécile Rouzier","doi":"10.1038/s41431-026-02256-x","DOIUrl":"https://doi.org/10.1038/s41431-026-02256-x","url":null,"abstract":"<p><p>Mitochondrial diseases (MD) are the most common inherited metabolic disorders and show marked clinical and genetic heterogeneity. Despite widespread use of whole-exome (WES) and whole-genome sequencing (WGS), nearly half of patients remain without molecular diagnosis, partly due to difficulties in interpreting variants affecting RNA splicing or gene expression. RNA sequencing (RNA-seq) has shown promise in research settings, few studies have evaluated its feasibility in routine clinical diagnostics under technical and financial constraints. We evaluated the implementation of RNA-seq in a routine diagnostic workflow for MD using fibroblasts from 38 patients, including 8 analyzed with a candidate-gene approach and 30 with an untargeted strategy. To optimize the workflow and improve sensitivity in untargeted analyses, we focused on aberrant expression detection using OUTRIDER with complementary analytical strategies, including multiple testing correction restricted to disease-relevant gene sets and Z-score-based outlier detection combined with phenotype-driven prioritization using Human Phenotype Ontology terms. This combined strategy enabled diagnostic performance comparable to previously published studies while optimizing resources. Pathogenicity was confirmed in 75% of targeted cases (6/8). In the untargeted cohort, new molecular diagnoses were established in 13% of patients (4/30), despite fewer samples than typically recommended and minimizing costs. Our study demonstrates that RNA-seq is feasible and clinically informative in a routine diagnostic setting despite analytical and financial constraints. RNA-seq represents a valuable complement to WES/WGS for improving variant interpretation and diagnostic yield in MD. We propose a practical framework for its implementation alongside genome sequencing in routine diagnostics.</p>","PeriodicalId":12016,"journal":{"name":"European Journal of Human Genetics","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2026-10-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149165016","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterisation of a Portuguese origin founder missense variant in MSH6. MSH6中葡萄牙血统创始人错义变体的特征。
IF 4.6 2区 生物学
European Journal of Human Genetics Pub Date : 2026-10-09 DOI: 10.1038/s41431-026-02248-x
Kenzie Melvill, Leora Witkowski, Céline Domecq, Nancy Hamel, Justin Mayers, Sofia Maia, Manuel R Teixeira, Carla Pinto, Inês Francisco, Cristina Albuquerque, Léa Guerrini-Rousseau, Olivia C Tan, Kevin McDonnell, Alexandra Capasso, George Chong, Victoria Marcus, William D Foulkes
{"title":"Characterisation of a Portuguese origin founder missense variant in MSH6.","authors":"Kenzie Melvill, Leora Witkowski, Céline Domecq, Nancy Hamel, Justin Mayers, Sofia Maia, Manuel R Teixeira, Carla Pinto, Inês Francisco, Cristina Albuquerque, Léa Guerrini-Rousseau, Olivia C Tan, Kevin McDonnell, Alexandra Capasso, George Chong, Victoria Marcus, William D Foulkes","doi":"10.1038/s41431-026-02248-x","DOIUrl":"https://doi.org/10.1038/s41431-026-02248-x","url":null,"abstract":"<p><p>In certain populations, founder pathogenic variants are a common cause of Lynch syndrome. Here, we report the identification of a novel Portuguese founder variant, NM_000179.3 (MSH6):c.2061 T > G (p.Cys687Trp). Our study examined 14 probands and 19 additional family members who carry this variant. With one exception, haplotype data are consistent with a single origin for all heterozygotes, likely in the Leiria District of Portugal. We investigated the clinicopathological consequences of this variant and found that, as previously reported for MSH6 pathogenic variants, (a) the presence of a pathogenic variant is not reliably associated with loss of MSH6 expression or microsatellite instability and (b) endometrial cancer is the most common associated phenotype. Due to the requirement to apply the BP5 code according to ACMG criteria, the variant is classified as a variant of uncertain significance rather than likely pathogenic. Nevertheless, the balance of evidence we present here suggests that this variant is associated with an increased risk for MSH6-related Lynch syndrome tumors.</p>","PeriodicalId":12016,"journal":{"name":"European Journal of Human Genetics","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2026-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149147769","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genetic testing and counselling of patients with monogenic amyotrophic lateral sclerosis in Northern Finland: a retrospective, single-centre study. 芬兰北部单基因肌萎缩侧索硬化症患者的基因检测和咨询:一项回顾性单中心研究。
IF 4.6 2区 生物学
European Journal of Human Genetics Pub Date : 2026-10-08 DOI: 10.1038/s41431-026-02246-z
Maari Kytöharju, Jukka S Moilanen, Mika H Martikainen
{"title":"Genetic testing and counselling of patients with monogenic amyotrophic lateral sclerosis in Northern Finland: a retrospective, single-centre study.","authors":"Maari Kytöharju, Jukka S Moilanen, Mika H Martikainen","doi":"10.1038/s41431-026-02246-z","DOIUrl":"https://doi.org/10.1038/s41431-026-02246-z","url":null,"abstract":"<p><p>Amyotrophic lateral sclerosis (ALS) is a common neurodegenerative disease. Its aetiology is complex, but a subset is caused by single-gene pathogenic variants (monogenic ALS). The most common ALS-associated genes are SOD1 and C9orf72. We evaluated the implementation of genetic testing and associated genetic counselling for ALS at a Finnish tertiary-level university hospital. We used the electronic patient records of Oulu University Hospital (Oulu, Finland) to identify patients diagnosed with ALS between 2000 and 2023. Medical records were reviewed for neurological diagnosis and completion of genetic testing and counselling. We identified a total of 387 patients diagnosed with ALS. Of these, 225 patients (58%) were offered genetic testing, and 186 (83%) accepted. The offer for genetic counselling was given to 60 patients, of whom 46 (77%) attended counselling, whilst 13 did not. The proportion of patients who declined counselling did not differ between those with SOD1 and C9orf72 variants. Among the 143 patients tested for SOD1 variants, 36 (25%) were confirmed to harbor the ALS-associated p.Asp91Ala variant in SOD1; 31 were homozygous and 5 were heterozygous. In the 96 analyses of the C9orf72 hexanucleotide expansion, the diagnostic yield was 27 (28%) patients. A positive family history was more common in SOD1-ALS than in C9orf72-ALS (53% vs 33%). Nearly one fifth of patients declined testing and over one fifth of those with genetic ALS did not attend genetic counselling. The reasons for this warrant further investigation.</p>","PeriodicalId":12016,"journal":{"name":"European Journal of Human Genetics","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2026-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149135616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Parental reactions to and preferences for genomic newborn screening in Germany: findings from a scenario-based survey experiment. 德国父母对基因组新生儿筛查的反应和偏好:基于场景的调查实验结果。
IF 4.6 2区 生物学
European Journal of Human Genetics Pub Date : 2026-10-08 DOI: 10.1038/s41431-026-02253-0
Elena Sophia Doll, Julia Mahal, Karla Alex, Carlotta Julia Mayer, Ulrike Mütze, Heiko Brennenstuhl, Ralf Müller-Terpitz, Stefan Kölker, Christian P Schaaf, Eva C Winkler, Hadley Stevens Smith, Beate Ditzen
{"title":"Parental reactions to and preferences for genomic newborn screening in Germany: findings from a scenario-based survey experiment.","authors":"Elena Sophia Doll, Julia Mahal, Karla Alex, Carlotta Julia Mayer, Ulrike Mütze, Heiko Brennenstuhl, Ralf Müller-Terpitz, Stefan Kölker, Christian P Schaaf, Eva C Winkler, Hadley Stevens Smith, Beate Ditzen","doi":"10.1038/s41431-026-02253-0","DOIUrl":"https://doi.org/10.1038/s41431-026-02253-0","url":null,"abstract":"<p><p>Parental perspectives are central in ongoing debates about genomic newborn screening (gNBS). This study examined (expecting) parents' interest in gNBS in Germany. We hypothesized that condition characteristics (actionability, genetic penetrance) and personal factors (e.g., attitudes towards gNBS, anticipated coping, risk perception) predict parental interest in gNBS for their child. We also investigated determinants of risk perception. In an online survey (N = 556; 60% women; M age=35 years), participants evaluated nine hypothetical case-scenarios that systematically varied penetrance and actionability. Data were analyzed using multilevel models, latent profile analysis and descriptive statistics. Overall, (expecting) parents showed a strong demand for information, driven more by perceived benefits than concerns. Two profiles emerged: one highly open and one seeking information more selectively. Across scenarios, higher interest in potential gNBS findings was associated with high actionability and moderate penetrance (50-74%) of possible target conditions, prior experience with chronic conditions, greater anticipated coping with test results, higher perceived probability of condition development, and more positive than negative attitudes toward gNBS. Perceived probability (subjective risk) predicted interest better than objective risk (penetrance), but was itself well explained by penetrance. Diagnostic concern (worry about disease manifestation) was consistently higher than perceived probability across penetrance levels and more pronounced in women. Implications include avoiding the reporting of low-penetrance findings due to disproportionate diagnostic concern and providing decision aids to support informed parental decision-making.</p>","PeriodicalId":12016,"journal":{"name":"European Journal of Human Genetics","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2026-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149135640","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Gene-specific reclassification patterns of variants in hypertrophic cardiomyopathy. 肥厚性心肌病变异的基因特异性重分类模式。
IF 4.6 2区 生物学
European Journal of Human Genetics Pub Date : 2026-10-06 DOI: 10.1038/s41431-026-02227-2
Athanasios Bakalakos, Rebeca Lorca, Alexandros Protonotarios, Douglas Ewan Cannie, Marion van Vugt, Imogen Kate Heenan, Gabrielle Norrish, Juan Pablo Kaski, Petros Syrris, Perry Mark Elliott
{"title":"Gene-specific reclassification patterns of variants in hypertrophic cardiomyopathy.","authors":"Athanasios Bakalakos, Rebeca Lorca, Alexandros Protonotarios, Douglas Ewan Cannie, Marion van Vugt, Imogen Kate Heenan, Gabrielle Norrish, Juan Pablo Kaski, Petros Syrris, Perry Mark Elliott","doi":"10.1038/s41431-026-02227-2","DOIUrl":"https://doi.org/10.1038/s41431-026-02227-2","url":null,"abstract":"<p><p>Genetic variant interpretation in hypertrophic cardiomyopathy (HCM) evolves as population reference datasets expand, gene-disease validity assessments examine new candidate genes and additional functional and segregation evidence accumulates. Periodic re-interpretation is, therefore, necessary. Likely pathogenic/pathogenic (LP/P) variants and variants of unknown significance (VUS) were re-evaluated in 2154 HCM index cases using the ACMG/AMP framework. Gene selection was based on ClinGen gene-disease validity assessments. Overall, 12.8% of 1355 variants in HCM genes were reclassified, with 7.5% resulting in clinically meaningful impact (3.5% upgrading from VUS to LP/P and 4% downgrading from LP/P to VUS). Variant reclassification affected the genetic status of 86 individuals (4.0%), including loss of LP/P status in 47 (2.2%) and new gene-positive diagnoses in 39 (1.8%). Of 536 unique variants, 19 (3.5%) were upgraded from VUS to LP/P, 44 (8.2%) were downgraded from LP/P to VUS and 287 (53.5%) maintained LP/P status. Variants in MYBPC3 and MYH7 largely retained pathogenic classification (92.0% and 83.2% unchanged). TNNT2 showed the highest proportion of VUS upgrades (28.6%) alongside high retention of pathogenic variants. The largest LP/P to VUS shifts were noted in ACTC1 (50.0%), MYL3 (42.9%), TPM1 (42.9%) and TNNI3 (20.0%). In this large HCM cohort, variant re-evaluation resulted in a modest but clinically relevant reclassification of genetic variants. MYBPC3 and MYH7 classifications were largely unaltered, showing limited net change. Upgrades in TNNT2 variants, the third most frequent gene in this cohort, are consistent with consolidation of locus-specific evidence and are important given their association with adverse outcomes, despite modest hypertrophy.</p>","PeriodicalId":12016,"journal":{"name":"European Journal of Human Genetics","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2026-10-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149106178","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Health inequalities in precision medicine: A systematic review. 精准医疗中的健康不平等:系统回顾。
IF 4.6 2区 生物学
European Journal of Human Genetics Pub Date : 2026-10-06 DOI: 10.1038/s41431-026-02225-4
Zeinab M Hassanein, Manpreet Bains, Rupinder Kaur Bajwa, Jo Leonardi-Bee, Leah Jayes, Ilze Bogdanovica, Jeremiah Donoghue, Linda Amah, Patricia Egwumba, Fatimah Aiyelabegan, Salah Hassan, Nicola Fletcher, Nadeem Qureshi
{"title":"Health inequalities in precision medicine: A systematic review.","authors":"Zeinab M Hassanein, Manpreet Bains, Rupinder Kaur Bajwa, Jo Leonardi-Bee, Leah Jayes, Ilze Bogdanovica, Jeremiah Donoghue, Linda Amah, Patricia Egwumba, Fatimah Aiyelabegan, Salah Hassan, Nicola Fletcher, Nadeem Qureshi","doi":"10.1038/s41431-026-02225-4","DOIUrl":"https://doi.org/10.1038/s41431-026-02225-4","url":null,"abstract":"<p><p>Precision medicine aims to revolutionise healthcare by providing personalised treatments based on individual genetic variations. A systematic review was conducted to explore ethnic inequalities in precision medicine, focusing on representation of ethnic minorities or indigenous minority groups in the reporting of genomic research in any healthcare setting in the UK or other high-income countries with similar healthcare systems. Seven electronic databases (MEDLINE, EMBASE, PsycINFO, CINAHL, ProQuest Central, ASSIA and Scopus) were searched from inception to October 2022. Two authors independently screened papers, extracted data, and assessed quality. This review included 137 studies and a narrative synthesis was performed. The review included both genome-wide association studies (GWAS) and related studies of polygenic risk scores, and consistently identified that these studies failed to report or inadequately reported genomic results in certain ethnic minorities or indigenous minority groups. Downstream this compromises the value of this research to improve genomic services for multi-ethnic populations in High-income countries. This can be improved by purposefully recruiting participants from these underrepresented communities.Review registration: Registered with the International Prospective Register of Systematic Reviews (PROSPERO) in November 2022; ID: CRD42022371245.</p>","PeriodicalId":12016,"journal":{"name":"European Journal of Human Genetics","volume":" ","pages":""},"PeriodicalIF":4.6,"publicationDate":"2026-10-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149106130","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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