{"title":"Passive acoustic monitoring for assessing forest bird distribution and identifying conservationally important areas in a subtropical forest landscape","authors":"Tohki Inoue, Yosuke Okura, Takehito Yoshida, Izumi Washitani","doi":"10.1111/1440-1703.12543","DOIUrl":"10.1111/1440-1703.12543","url":null,"abstract":"<p>Passive acoustic monitoring (PAM) has recently been developed and used for long-term and/or large spatial scale surveys. PAM is expected to be one of the most efficient methods for assessing species distribution and examining the factors affect it, helping identify important areas for biodiversity conservation and inform the management plan. In this study, we tested the feasibility of the PAM for monitoring bird species and revealed some critical points to consider in improving or developing more widely applicable PAM. We conducted PAM in the subtropical forest landscape of Amami-Oshima Island, Japan, which harbors rich biodiversity (over 100 species), including endangered and/or endemic plants and animals. Nine endemic forest bird species were detected across recording locations. The effects of environmental factors on the four bird species were analyzed, excluding the five species that were commonly detected and did not require occupancy modeling. Different environmental factors influenced the occupancy probability of the four species examined according to their habitat preferences, which is consistent with previous studies. Our results suggest that the combination of PAM and occupancy model enables us to identify the bird's spatial occupancy pattern, associated environmental factors, and the important areas that should be protected for conservation. PAM is a relatively low-cost and non-invasive method that can be applied in various monitoring of biodiversity conservation areas.</p>","PeriodicalId":11434,"journal":{"name":"Ecological Research","volume":"40 4","pages":"491-504"},"PeriodicalIF":1.4,"publicationDate":"2025-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144666624","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Romane Rozanski, David Eme, Eilish Richards, Marie-Emilie Deschez, Marta M. Rufino, Verena M. Trenkel, Pascal Lorance, Virginie Marques, Jerôme Spitz, Florence Cornette, Séverine Albouy-Boyer, Andrea Polanco Fernandez, Bruno Ernande, Loic Pellissier, Camille Albouy
{"title":"ATL_FISHREF: A 12S mitochondrial reference dataset for metabarcoding Atlantic fishes frequently caught during scientific surveys in the Bay of Biscay","authors":"Romane Rozanski, David Eme, Eilish Richards, Marie-Emilie Deschez, Marta M. Rufino, Verena M. Trenkel, Pascal Lorance, Virginie Marques, Jerôme Spitz, Florence Cornette, Séverine Albouy-Boyer, Andrea Polanco Fernandez, Bruno Ernande, Loic Pellissier, Camille Albouy","doi":"10.1111/1440-1703.12542","DOIUrl":"10.1111/1440-1703.12542","url":null,"abstract":"<p>The biodiversity crisis driven by anthropogenic pressures significantly threatens marine ecosystems. The rate of climate change and anthropogenic impacts outpace our traditional observation tools' capabilities, underscoring the urgency for new assessment methods. Environmental DNA (eDNA; DNA traces released by organisms) metabarcoding, a non-invasive method widely developed over the last decade, represents a promising biomonitoring tool thanks to a large spatio-temporal coverage, high detection of rare species and its time and cost-effectiveness. However, capturing fish diversity using eDNA requires genetic reference databases, currently lacking. Improving reference databases relies on opportunistic sampling enabling the reporting of sequences for new species. The data provided here consists of barcoding 86 species of fishes over the 12S mitochondrial DNA gene. We generated 156 sequences of the mitochondrial 12S gene adapted to the “Teleo” barcodes from fishes sampled in the Bay of Biscay (BoB; Northeast Atlantic, France) between 2017 and 2019. In addition, we provided each individual the barcode details (Genbank accession number, chromatograms), a photograph, 5 ecomorphological measures and 11 life-history traits documenting ecological functions (e.g., dispersion, habitat use, diet). Furthermore, we provided the sampling metadata (e.g., date, time, gear, coordinates, depth) and environmental variables measured in situ (e.g., conductivity, water/air temperature). This data set is valuable to improve the Northeast Atlantic eDNA genetic database, thus helping to better understand the effects of environmental forcing in the BoB, a transition zone housing mixed assemblages of boreal, temperate, and subtropical fish species susceptible to display variability in functional traits to adapt to changing conditions. The detailed Metadata for this abstract published in the Data Article section of the journal is available in MetaCat in JaLTER at https://jalter.diasjp.net/data/ERDP-2024-09.</p>","PeriodicalId":11434,"journal":{"name":"Ecological Research","volume":"40 4","pages":"615-625"},"PeriodicalIF":1.4,"publicationDate":"2025-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144666576","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Are disjunct populations of Betula costata in the Japanese Archipelago glacial relict? An attempt at verification by species distribution modeling","authors":"Takuto Shitara, Takaki Aihara, Arata Momohara, Ikutaro Tsuyama, Tetsuya Matsui","doi":"10.1111/1440-1703.12541","DOIUrl":"10.1111/1440-1703.12541","url":null,"abstract":"<p>A glacial relict, a remnant of a cold-adapted species or population from a postglacial retreat, is essential for understanding the formation processes of present-day vegetation. Although past distributions have been reconstructed for several woody species in Japan, few studies have focused on the cold-adapted woody species that survive in the Japanese Archipelago. <i>Betula costata</i> Trautv., a species considered a glacial relict, is a common canopy tree in the cool-cold temperate forests in Northeast Asia. However, <i>B. costata</i> is rare and has a disjunct distribution in the Japanese Archipelago, and the reasons for its rarity and disjunction in Japan remain poorly understood. Therefore, we investigated the distribution of <i>B. costata</i> in Northeast Asia since the last glacial maximum (LGM; between ca. 27,000 and 19,000 years ago) using species distribution models (SDMs). We tested the working hypothesis that <i>B. costata</i> was once abundant in the Japanese Archipelago during the LGM. However, postglacial climate warming caused it to become a disjunct and relict. Two types of SDMs, Maxnet and Random Forest, predicted suitable habitats for the species with three time periods: The LGM, mid-Holocene, and present. The resulting maps of suitable habitats during the LGM showed extensive distribution across continental Asia and the Japanese Archipelago. By the mid-Holocene and the present, suitable habitats expanded northward in continental Asia but retreated in the Japanese Archipelago due to increases in the minimum coldest quarter temperature and precipitation. These simulation results support the hypothesis that the Japanese population of <i>B. costata</i> is a glacial relict.</p>","PeriodicalId":11434,"journal":{"name":"Ecological Research","volume":"40 4","pages":"475-490"},"PeriodicalIF":1.4,"publicationDate":"2024-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1440-1703.12541","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144666410","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yoichi Tsuzuki, Haruna Ohsaki, Yawako W. Kawaguchi, Sayaka Suzuki, Shogo Harada, Yurie Otake, Naoto Shinohara, Koki R. Katsuhara
{"title":"Nationwide diversity of symbolic “city flowers” in Japan is increasing","authors":"Yoichi Tsuzuki, Haruna Ohsaki, Yawako W. Kawaguchi, Sayaka Suzuki, Shogo Harada, Yurie Otake, Naoto Shinohara, Koki R. Katsuhara","doi":"10.1111/1440-1703.12540","DOIUrl":"10.1111/1440-1703.12540","url":null,"abstract":"<p>Recognizing and maintaining locally rooted human–nature interactions is essential for utilizing ecosystem services. Although the general public's awareness of biodiversity and ecosystem services has been examined using various proxies, it remains unclear how local governments—key sectors in creating conservation policies—appreciate them within a solid local context. Here, we focused on the “city flower,” an official symbolic species of Japanese cities, as a new proxy for measuring governmental attitudes toward biota and its services. We aimed to capture temporal changes in the awareness of species with locally relevant value at the city government level by examining the changes in city flowers over more than half a century. Data from the official websites of municipalities, including the names, the adoption years, and the reasons for adoption, revealed two major periods of adoption, with a notable increase in species diversity in and after 1993. This increase could be attributed to a recent reduction in bias toward popular flowers and growing interest in alternative, less popular flowers. Analysis of the reasons for adoption suggested that the temporal change in adopted flower species was related to the increasing emphasis on species with an explicit local context, especially those with instrumental value to the city. Our findings indicate the tendency for local governments to increasingly recognize their biocultural backgrounds and the ecosystem services of plants within their regions. The growing awareness of the local governments regarding their biocultural background is a positive sign for the conservation of biodiversity and ecosystem services.</p>","PeriodicalId":11434,"journal":{"name":"Ecological Research","volume":"40 4","pages":"463-474"},"PeriodicalIF":1.4,"publicationDate":"2024-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1440-1703.12540","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144666409","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Physiological profiling of the soil microbe community using the EcoPlate and assessment of soil properties at 74 planted forest sites across Japan","authors":"Masahiro Nakamura, Chisato Terada, Kinya Ito, Tsutom Hiura, Hideaki Shibata, Takeshi Miki, Taku M. Saitoh, Masahiro Takagi, Toshiyuki Hougen, Shin-ichiro S. Matsuzaki, Mirai Watanabe, Hiroyuki Tado, Norifumi Hotta, Yoshiko Kosugi, Nobuyuki Aiko, Nagahiro Kojima, Nana Katagiri, Koju Kishimoto, Tomohiro Yoshida, Yuuki Tsunoda, Tatsumi Takamiya, Kosuke Ito, Yasuhiro Utsumi, Tetsuro Yoshikawa, Tanaka Kenta, Miho Oda, Naoki Agetsuma, Masataka Kawai, Toru Fujita, Takuo Hishi, Hiromasa Shimada, Tomoaki Ichie, Kazuhiko Hoshizaki, Hajime Kobayashi, Tatsuyuki Seino, Mahoko Noguchi, Dai Nagamatsu, Haruo Saito, Ryunosuke Tateno, Masae Iwamoto Ishihara, Yoichiro Kitagawa, Yoko Hisamoto, Kosuke Homma, Toshihide Hirao, Tatsuya Otani, Motomu Toda, Jinshi Terada, Tomonori Kume, Karibu Fukuzawa, Atsushi Takashima, Koki Kurose, Sakae Fujii, Shunsuke Itoh, Tamihisa Ohta, Kazuhiko Otsuki, Takuo Nagaike, Kyohei Hasegawa, Kobayashi Makoto, Manabu Shirahata, Sawako Matsuki, Masayuki Hatanaka, Satoshi Suzuki, Noriyuki Muro, Tomoyuki Yamoto, Naoyuki Adachi, Nobuhiro Kaneko, Tamon Yamashita","doi":"10.1111/1440-1703.12506","DOIUrl":"10.1111/1440-1703.12506","url":null,"abstract":"<p>Due to policies supporting large-scale expansion of plantation forestry, about 40% of the forests in Japan are planted forests, such as Japanese cedar (<i>Cryptomeria japonica</i>) and hinoki cypress (<i>Chamaecyparis obtusa</i>). We present the largest freely available EcoPlate dataset for planted forests in Japan, comprising data collected from a network of 74 planted forest sites (114 plots) in regions ranging from cool-temperate to subtropical. The EcoPlate is a 96-well microplate that contains three sets of 31 “response wells” with different carbon substrates. The utilization of each carbon substrate by the microbial community is quantified based on the color development of the well during incubation, providing a multifunctional index of the soil microbial community. Soil properties (water content, carbon, nitrogen, the carbon/nitrogen (C/N) ratio, and pH) essential for interpreting the EcoPlate results were also analyzed. Using a standardized protocol, soil was sampled between July and November 2021. A preliminary principal coordinate analysis (PCoA) was performed on the temporal integration of color density using the 31 substrates. PCo1 explained 36.5% of the variance of the overall absorbance of all substrates. A model of environmental factors, including elevation, and a model of soil properties, including pH, water content, and carbon, were the best-fit models. EcoPlate data allow us to test hypotheses related to community ecology and the ecosystem functions of the soil microbial community in planted forests on a regional scale. The complete data set for this abstract published in the Data Article section of the journal is available in electronic format in MetaCat in JaLTER at https://jalter.diasjp.net/data/ERDP-2024-08.</p>","PeriodicalId":11434,"journal":{"name":"Ecological Research","volume":"40 2","pages":"228-242"},"PeriodicalIF":1.4,"publicationDate":"2024-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143645848","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Invasive Amaranthus retroflexus obtains a competitive advantage over native A. tricolor under the addition of A. retroflexus leaf litter","authors":"Chuang Li, Yue Li, Zhongyi Xu, Mawei Zhu, Yuqing Wei, Zhelun Xu, Shanshan Zhong, Congyan Wang, Daolin Du","doi":"10.1111/1440-1703.12539","DOIUrl":"10.1111/1440-1703.12539","url":null,"abstract":"<p>There is a scarcity of research examining the influences of the addition of leaf litter from invasive plants on their own growth performance, particularly in the context of their own competitive advantage when co-cultured with native plants. This study aimed to examine the influences of the addition of a gradient of the invasive plant <i>Amaranthus retroflexus</i> L. leaf litter (ARLL) on its competitive advantage. An indoor planting experiment was conducted to analyze the competitive advantage of <i>A. retroflexus</i> with three forms of incubation conditions, that is, <i>A. retroflexus</i> in the monoculture, <i>A. tricolor</i> L. in the monoculture, and <i>A. retroflexus</i> co-cultured with <i>A. tricolor</i>. The addition of a low amount of ARLL was found to significantly enhance the competitive ability to obtain sunlight of both <i>Amaranthus</i> plants. The leaf photosynthetic capacity of <i>A. tricolor</i> and the growth competitiveness of <i>A. retroflexus</i> were found to be greater in the co-culture than in the monoculture. The competitive ability to obtain sunlight, the relative competitive intensity, and relative dominance of <i>A. retroflexus</i> were found to be stronger than those of <i>A. tricolor</i> regardless of the amount of ARLL and the form of incubation condition. Consequently, <i>A. retroflexus</i> can obtain a competitive advantage over <i>A. tricolor</i> under the addition of a gradient of ARLL. Accordingly, the stronger competitive advantage of <i>A. retroflexus</i> may facilitate its invasion process.</p>","PeriodicalId":11434,"journal":{"name":"Ecological Research","volume":"40 4","pages":"452-462"},"PeriodicalIF":1.4,"publicationDate":"2024-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144666310","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Francisco Amador-Cruz, Blanca L. Figueroa-Rangel, Miguel Olvera-Vargas, Manuel E. Mendoza
{"title":"A methodological procedure for the estimation of ecological value applied to a neotropical cloud forest","authors":"Francisco Amador-Cruz, Blanca L. Figueroa-Rangel, Miguel Olvera-Vargas, Manuel E. Mendoza","doi":"10.1111/1440-1703.12538","DOIUrl":"10.1111/1440-1703.12538","url":null,"abstract":"<p>Ecological value (EV) refers to the intrinsic values of a landscape based on the assessment of five criteria: biodiversity, vulnerability, fragmentation, connectivity, and resilience. While many studies use remote sensing for EV assessment, few incorporate fieldwork data. In our research, we present a novel methodology involving field data collection to quantify each criterion. Additionally, we propose a numerical procedure to aggregate rankings and determine EV. Our study took place in a highly biodiverse neotropical cloud forest in western Mexico. Biodiversity was assessed through evenness, vulnerability by counting threatened species, fragmentation based on tree functional traits, connectivity by tree dispersal syndrome and successional behavior, and resilience from tree species' information and material legacies. To reveal similarity patterns among plots regarding the criteria and EV, we used nonmetric multidimensional scaling with permutational multivariate analysis of variance. To assess EV estimation reliability, we used altitude and azimuth as predictors through generalized additive models. The methodology unveiled that plots with the highest EV do not necessarily possess superior ecological properties (biodiversity and/or vulnerability) or structural and functional features (fragmentation, connectivity, and/or resilience), thus demonstrating the importance of including all criteria in the assessment and avoiding the use of a single criterion. Results showed that cloud forest plots with the highest EV were at an altitude of 1900–2200 m asl, facing southeast and northwest orientations. These plots were characterized by a high number of threatened species, low fragmentation, and high levels of connectivity and resilience.</p>","PeriodicalId":11434,"journal":{"name":"Ecological Research","volume":"40 4","pages":"437-451"},"PeriodicalIF":1.4,"publicationDate":"2024-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144666306","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Ecosystem transition due to deer overabundance: Insights from long-term studies and future considerations","authors":"Maki Suzuki","doi":"10.1111/1440-1703.12537","DOIUrl":"10.1111/1440-1703.12537","url":null,"abstract":"<p>The overabundance of certain deer species is emerging as a critical issue in many forested regions across the Northern Hemisphere, including those in Japan. In the field of deer impact studies, the prevailing notion has been that overabundant deer populations could cause drastic changes of ecosystem states. This study comprises a review of the historical discussion surrounding ecosystem changes caused by deer overabundance, from theoretical frameworks to in situ observations and experiments. The synthesis highlights the potential for state transitions, shifting ecosystems from forest to nonforest states, and in some scenarios to a so-called alternative stable states. However, detecting these transitions poses challenges due to the enduring impacts of past deer activity and the nonequilibrium nature of forest dynamics. Furthermore, this study reveals additional multifield complexities arising from the interactive effects of deer overabundance and global changes on future forest dynamics. To address these challenges, new avenues for research are proposed, emphasizing the importance of sustained efforts in conducting valuable long-term studies.</p>","PeriodicalId":11434,"journal":{"name":"Ecological Research","volume":"40 1","pages":"3-19"},"PeriodicalIF":1.4,"publicationDate":"2024-11-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1440-1703.12537","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143112085","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Roger H. Tang, Mirko Salinitro, Philip Nti Nkrumah, Peter D. Erskine, Antony van der Ent
{"title":"Copper, lead, and zinc tolerance and accumulation in the Australian rattle pods Crotalaria novae-hollandiae, C. medicaginea, and C. mitchellii","authors":"Roger H. Tang, Mirko Salinitro, Philip Nti Nkrumah, Peter D. Erskine, Antony van der Ent","doi":"10.1111/1440-1703.12535","DOIUrl":"10.1111/1440-1703.12535","url":null,"abstract":"<p><i>Crotalaria</i> is a genus of ~600 species of legumes predominantly found in (sub)tropical regions of Africa and Australia. <i>Crotalaria novae-hollandiae</i> from Australia is a polymetallic zinc (Zn)-cadmium(Cd)-copper(Cu) hyperaccumulator, but only when growing in metalliferous soils. This study aimed to test metal tolerance in Australian <i>Crotalaria</i> species to establish whether metal tolerance is a trait shared between <i>Crotalaria</i> species not known to occur on metalliferous soils. The hyperaccumulator <i>Crotalaria novae-hollandiae</i> and two non-metallophytes, <i>Crotalaria mitchellii</i> and <i>Crotalaria medicaginea,</i> were exposed to different treatments containing Cu-lead(Pb)-Zn in the form of spiked soils. Foliar samples were analyzed for total elemental concentrations and spectrophotometric analysis was undertaken to assess photosynthetic pigments (chlorophyll <i>a</i> + <i>b</i> and carotenoids) as indicators of stress and polyphenols as an indicator of tolerance. No significant differences in metal accumulation were found in the <i>Crotalaria</i> species, and all exhibited a high level of tolerance toward Zn. However, <i>C. novae-hollandiae</i> exhibited the greatest tolerance toward Zn but had low tolerance toward Cu, while none accumulated foliar Pb. Tolerance to Zn appears to be a trait shared between the <i>Crotalaria</i> species tested. None of the tested <i>Crotalaria</i> species exhibited tolerance toward Cu, and none accumulated Pb.</p>","PeriodicalId":11434,"journal":{"name":"Ecological Research","volume":"39 6","pages":"966-976"},"PeriodicalIF":1.4,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142749247","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}