{"title":"Cooperative thin filament activation of a kinetic model of cardiac sarcomere dynamics","authors":"J. Raghavan, W. Hunter","doi":"10.1109/NEBEC.2015.7117191","DOIUrl":"https://doi.org/10.1109/NEBEC.2015.7117191","url":null,"abstract":"Actin-myosin crossbridges form in a sarcomere under the control of calcium ions binding to the thin filament. Crossbridges first form weak attachments before they transform into strong bonds that generate force. An appropriately simplified model of this action is critical for developing higherlevel models of cardiac function. Models can be simplified by separating slower from faster processes, where the fast processes have achieved equilibrium. Processes in equilibrium can also be analyzed using the Ising model of statistical mechanics, which allows us to study a row of cooperatively interacting units - as occurs along the thin filament. Using these concepts, the sarcomere model was simplified to 3 states: (1) strong crossbridges attached to a regulatory unit (RU) on the thin filament that had calcium bound to it; (2) strong crossbridges attached to an RU without calcium; (3) an equilibrium mixture of detached and weakly attached crossbridges with and without calcium bound. This simplified model predicted steady-state relationships between force and calcium that reproduced the experimentally seen trend toward less cooperativity as force rises to more than half maximum. It also predicted a trend for clustering of strong crossbridges along the thin filament due to cooperative interactions.","PeriodicalId":111398,"journal":{"name":"2015 41st Annual Northeast Biomedical Engineering Conference (NEBEC)","volume":"27 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2015-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123015984","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
E. Clément, S. Knowlton, T. Mandelkern, S. Tasoglu
{"title":"Engineering a microfluidic organ model using 3-dimensional micropatterned cellular constructs","authors":"E. Clément, S. Knowlton, T. Mandelkern, S. Tasoglu","doi":"10.1109/NEBEC.2015.7117104","DOIUrl":"https://doi.org/10.1109/NEBEC.2015.7117104","url":null,"abstract":"This novel design represents a broadly applicable three-dimensional technique for fabricating an “organ-on-a-chip” that serves as a viable platform for tissue studies. Current methods of biological research rely on animal testing and two-dimensional tissue cultures, but fail to provide physiologically accurate models of human tissue. This demonstrates a pressing need for convenient, physiologically relevant tissue models to advance biomedical research. Advances in microfluidics and cell encapsulation within hydrogels have made significant strides in trying to meet these needs, but the potential to use these technologies for engineering physiologically relevant tissue models has yet to be fully realized. Here, we present a microfluidic device which will integrate three-dimensional micro-patterned cellular constructs that may be subjected to flow through microfluidic channels. This microphysiological platform takes advantage of microfluidics, cell encapsulation within 3-dimensional constructs, and microscale patterning of different cell types. This creates a spatially patterned co-culture environment which accurately mimics the physiological conditions within many human organs. Here, we aim to model bone tissue, but the developed technology is generally applicable to any tissue or organ in either the healthy or diseased state. This work represents a significant improvement to biomedical research tools and tissue models currently available.","PeriodicalId":111398,"journal":{"name":"2015 41st Annual Northeast Biomedical Engineering Conference (NEBEC)","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2015-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129960326","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Tumor-penetrating aerosol nanocomposite microparticles for the treatment of lung cancer","authors":"Elisa A. Torrico-Guzman, Samantha A. Meenach","doi":"10.1109/NEBEC.2015.7117203","DOIUrl":"https://doi.org/10.1109/NEBEC.2015.7117203","url":null,"abstract":"One of the major public health problems in the Unites States is cancer, where over 1 in 4 deaths is due to this disease each year. As of 2010, lung and bronchus cancers are the leading types of cancer-related deaths in all ages for males and females in the US [1]. The chemotherapeutic treatment most often applied for lung cancer is intravenous paclitaxel (PTX) in the form of Taxol. Methods used to treat respiratory diseases such as asthma and chronic obstructive pulmonary disease (COPD) involve the use of aerosols devices. The first use of aerosolized chemotherapy was reported in 1968 [2]. The advantage of using aerosols treatment is the targeting directly to the lungs and the reduction of systemic side effects provoked by high doses of drug in the body. In this project we have developed a dry powder nanocomposite microparticle (nCmP) aerosol containing PTX-loaded nanoparticles comprised of acetalated dextran (Ac-Dex). Ac-Dex is easily biodegradable and results in fast release of therapeutic agents under acidic conditions as seen in tumor tissues [3]. In addition to the drug, a tumor-penetrating peptide (iRDG) was conjugated to Ac-Dex to help the targeting and penetration into the inner layers of solid tumors. Finally, we formulated nCmPs in mannitol via spray drying. The effectiveness of the complex drug produced was tested in lung cancer cells (A459 lung adenocarcinoma) in two-dimensional (2-D) and three-dimensional (3-D) cell culture studies.","PeriodicalId":111398,"journal":{"name":"2015 41st Annual Northeast Biomedical Engineering Conference (NEBEC)","volume":"118 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2015-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116358419","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jonathan K. Sakkos, Daniel P. Kieffer, L. Wackett, A. Aksan
{"title":"Design of porous silica gels for bioremediation of aromatic hydrocarbons","authors":"Jonathan K. Sakkos, Daniel P. Kieffer, L. Wackett, A. Aksan","doi":"10.1109/NEBEC.2015.7117037","DOIUrl":"https://doi.org/10.1109/NEBEC.2015.7117037","url":null,"abstract":"Bioencapsulation is a low-cost, low energy demand technology for harnessing the power of microorganisms for applications such as bioremediation, biosensing, and biocatalysis. Silica gels have been investigated for bioencapsulation, yet few studies have focused on gel mechanical properties and biocatalytic activity simultaneously, instead studying the viability of the encapsulated microorganisms. In order to utilize these unique biocatalytic functionalities in the context of industrially relevant processes, bioencapsulation materials with high mechanical strength are required. Herein, we report the development of silica gels for bioremediation based on varying ratios of silicon alkoxide and silica nanoparticles. The results of this study indicate that the alkoxide to nanoparticle ratio can be used to control the gel mechanical properties as well as the biocatalytic activity.","PeriodicalId":111398,"journal":{"name":"2015 41st Annual Northeast Biomedical Engineering Conference (NEBEC)","volume":"113 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2015-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116471172","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Lymphangiectasia detection in Wireless Capsule Endoscopy images using Fisher Transform Method","authors":"M. Alizadeh, H. Eskandari, K. Sharzehi","doi":"10.1109/NEBEC.2015.7117145","DOIUrl":"https://doi.org/10.1109/NEBEC.2015.7117145","url":null,"abstract":"Finding borders of interests in both normal and abnormal images might be helpful for physician to make decision of an image being normal or abnormal. Also, in some points instead of entire images these detected borders can be considered for processing. In this paper, the author proposed the Fisher Transform Method (FTM) as edge detection method. FTM increases gradient of endoscopy images and then, it will represent better performance rather than traditional methods. The proposed FTM was applied on 21 endoscopic images consist of normal and abnormal images included Lymphangiectasia captured by Wireless Capsule Endoscopy (WCE). The results show that, this method presents a better performance rather than color Canny edge detector. The detection results were validated with ground truth image was drawn by an independent board certified gastroenterologists. The proposed method was detected 96% of borders of Lymphangiectasia and 75% of borders in normal images. In comparison, it was detected 75% and 51% of Lymphangiectasia and normal image borders before using FTM respectively.","PeriodicalId":111398,"journal":{"name":"2015 41st Annual Northeast Biomedical Engineering Conference (NEBEC)","volume":"10 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2015-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124078642","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Re-tessellated mesh-based Monte Carlo for wide-field illumination sources","authors":"Ruoyang Yao, X. Intes, Q. Fang","doi":"10.1109/NEBEC.2015.7117208","DOIUrl":"https://doi.org/10.1109/NEBEC.2015.7117208","url":null,"abstract":"Monte Carlo methods are the gold standard in modeling light propagation through complex turbid tissues. However, with the advent of structured light illumination applications, it is becoming crucial to implement fast and efficient methods to simulate arbitrary wide-field sources over large surface areas. Herein, we improve upon our previous mesh-based Monte Carlo method by enabling the simulation of an extended range of wide-field illumination strategies using a computationally efficient mesh re-tessellation technique.","PeriodicalId":111398,"journal":{"name":"2015 41st Annual Northeast Biomedical Engineering Conference (NEBEC)","volume":"94 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2015-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126430770","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nouaying R. Kue, Kelsey Matthews, Nicholas Paiva, E. Chabot, P. Burbank, Ying Sun
{"title":"A smartphone based activity analyzer for monitoring and encouraging exercise","authors":"Nouaying R. Kue, Kelsey Matthews, Nicholas Paiva, E. Chabot, P. Burbank, Ying Sun","doi":"10.1109/NEBEC.2015.7117225","DOIUrl":"https://doi.org/10.1109/NEBEC.2015.7117225","url":null,"abstract":"Previously a microprocessor-based device, called Activity Analyzer with voice-Guidance for Independent Living Environments (AAGILE), was developed. The present project is focused on the implementation of AAGILE on a mobile platform that utilizes smartphone hardware such as the accelerometer and voice recording. The resulting app monitors and responds to user physical activity and inactivity; recorded voice messages will initiate to encourage exercise and/or provide instructions. This project has resulted in a cost-effective AAGILE system intended for increasing the level of activity for the older adults population.","PeriodicalId":111398,"journal":{"name":"2015 41st Annual Northeast Biomedical Engineering Conference (NEBEC)","volume":"5 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2015-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131996713","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
R. Cortinas, J. M. Gonzaga, A. R. Green, A. Saulenas, B. BuSha
{"title":"TCNJ Athlete Tracker","authors":"R. Cortinas, J. M. Gonzaga, A. R. Green, A. Saulenas, B. BuSha","doi":"10.1109/NEBEC.2015.7117126","DOIUrl":"https://doi.org/10.1109/NEBEC.2015.7117126","url":null,"abstract":"Athletes participating in competitive physical activity are susceptible to injury and overexertion. Due to the invasiveness of some monitoring devices, lack of durability, and discomfort when worn, most health monitoring devices are not suitable for athletes to wear during sports-based practices or games. The TCNJ Athlete Tracker was designed to monitor impact forces on the body, dehydration levels, body temperature, and heart rate while secured onto the athlete's body inside a form-fitting belt. The device was programmed to alert the athlete when a physiological metric was outside a specified safe range. The device records data from an infrared thermopile sensor, infrared heart rate monitor, two Ag/AgCl electrodes, and two three-axis accelerometers, and records the data on a USB memory drive. The performance of the TCNJ Athlete Tracker will be verified using standardized testing methods and validated by having athletes wear the device during a set of pre-determined exercises. This design offers a less obtrusive, comfortable, and durable monitoring device that athletes can wear during games and practices.","PeriodicalId":111398,"journal":{"name":"2015 41st Annual Northeast Biomedical Engineering Conference (NEBEC)","volume":"54 7","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2015-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132496771","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"On the detection of independent finger movements through two forearm myoelectrodes","authors":"P. Steele, J. Brooks, N. Gomes, Y. Sun, E. Chabot","doi":"10.1109/NEBEC.2015.7117220","DOIUrl":"https://doi.org/10.1109/NEBEC.2015.7117220","url":null,"abstract":"This study analyses forearm muscle contractions that occur during movements of individual fingers. An amplitude threshold is implemented on the multiplied backwards difference (MOBD) of the signal to determine when a muscle contraction occurs, and is followed by a windowed variance threshold of the MOBD to determine which finger contracted. The purpose is to create a low-cost, computationally efficient method to determine specific finger contractions from the forearm. This method was able to differentiate the ring finger from the other fingers, which in comparison had a variance approximately ten times higher.","PeriodicalId":111398,"journal":{"name":"2015 41st Annual Northeast Biomedical Engineering Conference (NEBEC)","volume":"50 3 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2015-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131013802","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
G. Feuer, M. Espitalie, K. Velez, H. Multani, R. Pivec, S. Saha
{"title":"The effect of mineralization on the time-dependent flexural deformation of cortical bone","authors":"G. Feuer, M. Espitalie, K. Velez, H. Multani, R. Pivec, S. Saha","doi":"10.1109/NEBEC.2015.7117160","DOIUrl":"https://doi.org/10.1109/NEBEC.2015.7117160","url":null,"abstract":"Viscoelastic creep is an important factor to take into account when modeling press-fit orthopedic implants and may contribute to progressive vertebral deformity. There is very little data that shows how the presence of mineral affects the creep behavior of cortical bone. For this study creep tests were performed on ovine cortical bone samples and a model was developed to show how mineralization affects the creep response. The data was fit to a modified Bailey-Norton power law with a term representing bone mineral content. These results show that the creep response is significantly affected by bone mineralization (p<;0.02, r=0.75, n=12).","PeriodicalId":111398,"journal":{"name":"2015 41st Annual Northeast Biomedical Engineering Conference (NEBEC)","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2015-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131230959","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}